morexGenes - Barley RNA-seq Database

Contig contig_63407
Source Contig contig_63407
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_63407 (5952 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_63407

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_73329	2	1181 bp	MLOC_73329.1	Available	Available	LOC_Os03g01810.1, FRAME:+3, EVALUE:6e-110, 13103.m00115 protein SNF7 domain containing protein, putative, expressed
CDS Structure of MLOC_73329

Contig Sequence (5952 bp)

>contig_63407 5952 assembly3_WGSMorex_rbca.fasta
ACAGGGCAACGTGATTAACTCACAGTTTCCTGCAGCAGCTATTTTTGGCATAGATCTATC
TTCTGAATAGTCATAGATCTTAGTTTCCTCATCAACTTAAACAATATAATCATCCCCTAA
CTAATGAGGTATATCCAAATGATTTGGGTCTGCCAGTTGGATTAGAGGGTCCTCTCGAGC
AGCTAAGTTTACATGAAAGAAGGAATTTTCCTCTTCTTCTAGTACTCGGACATAAATAGG
TGCTTGCAGCAGCTGTTTATTCTGAGGCTTTTCATTCATAGGGGCCTCATTGAAAGGCTG
AATGTTCAGATCAAAATCCAGATTGTTCCGGGGTTCAAGTGGAGCCTTCACATCTGCTTG
CTGAATGTGCAAGTCCACAAATTTAAAAGCTTACTATTGAGGCCCATGTGCGACAGCAGG
TGGTAGCTGAAAGTTATTTAAATTGGGCTGTTGAGAAACAATGTGGCCCACATGAAGGTT
GAGATTTGGCAGCCCATTTAGCCCATCTTGGGCCTGGCCATTTAAATTCAAACCTTCATT
TACCTCCACTGGCTGCATGTGCATATCTTTATTTTACGATTTGGGTTCAAAATGATGTTG
TTGTTTTTTTCTTCGGTAAAGGATATTTTCATTCAATCAATATAAAGAGATTATACAAAA
AAACTGCAAAAGAACCCATATCTATCATAAAGATACATGGAAAGTTTAAAAGCATATGTC
AAACATAAGAAAATTTGCATCGGGCTCCATGGTCCATTGAATGACCATGGTTGCCGCTAG
AACGAGTCGCCGACGCGTCGTTGCTCCAGCTCCCTTAATGGAGTTGGTCTGACCTTGCCG
ATAACAATCTGAAAGGCTTTGTGCATGTGCCCCTAAGGTCCAGCATCCGGAGCCACAATT
GTTGTTGTTGAAACGTTGAATCAATCTAAAGAACTTGACATCAAATTTCGTCATCGCGTA
CACACGACAAGAAACTCTAACCCCGCCACTGTAAAAACCTGGCAGGAATCTAGGCCAGAT
GTCCATATAATCAACCTCAACGGATGAATTTAAGAAGGATCGGACCTCCGAAGATTGACT
CGAAGTAGAAGCACCGCCTATGTGAGAACTAAAACGCTACCTATGTAGTAGCTGAAGCCG
ATGCACGAGGATTTCCTCCCTTTCACTGGCCGCCGGAGCGGTAGGCAGAGGGGAGGCGAA
TCCATAAGCGCACCGACGAAGATTGAGGGAAAGGAAGGCTTTGCCTTAGTCGCCTTGCTA
GATGGGAATAAAAAAGCATGGATTTCGCCCATGTTAATACAACATATAACCTCAAGGAGC
TAATGTGTGACCTCTGCAAAACACAATGCATACCGCCCACGTCCAAAAGGAAGTCATGCA
TGTTAAGAAAAGGGACAACCCAAGATGCATAGATCCTATCCGCAGATTACACCGACAGAA
ATGAAACCAGAGGAATAACTTCACTAAAAAAGGTAGTTTGGTTTGTAATATTTTTTATTA
TATCTCTAGAAACATCGTTGGGCAATCACCTCATATAAAGACTCGACAGAAAACCTGCCA
TTTAATGTCGTCTGCCTTCCCATCTCAGTCTCAGGCTTTGACATTATCCTACTTACACTC
ATTTTTATTTGGTTCAGGTTGTGTCCATGCGTTTGGTTGTCTTGAGCCGTCATTCCTTGA
TGTTCTCTTGATAATTAAGTTTTCGCTTCACACGGAAACGATCCCTCTGAGTATTTTTGG
GGGCATAATTTAGGTTTTTTGATAAAGTTAATTTACTACATTGTCTTTTGATAAACCCTA
CCTATATACAATGCGTAAGTTCTTTTTTGGTGGTGGTTTGTTTTCTGAGGACTTTTTTAG
GGTCGGTACTGTAGCGCTAAGCCCATGAGAGTGGCCAGAGTGGGCTTTCTCATGAATGAC
AGACTCCAAAAAGGAACCCTGATACGAGAGGCCCATCGAAGAAGACACTTTACATCATCT
ACCTATTGCTTGAGCCAGCCCATCGGCCCATGTGGCTCTTTCCCCAACCGCAGCAGAATC
ACGGCAACCCCTCAAAAAAAAAAAAAAAAGCAGAATCACGGCAGCAGCAGCAACTCCTTC
CCCCACTGCTCTCCGCCTCCGATCGATCCCACCGGAGCACCACCCGCCGCCGCCGGTCGG
ATCGGAACGGAGCGGCGATGGAGGCGGTGAAGAACCTCCTGAAGCCGAAGCCGACGCCGC
AGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGAGCGCC
AGATCCGAGGTTCCCCTCCCCCTTTCCCTCTCCCCGATTCGATCGAATCTAGGGATCTAG
AGCTTCACCTGGTCGCTGATTTCTGGTATGGGTGTGGGGGGCGCGCAGACGTGCAGAAGG
AGGAGAAGAAGGTGGAGAAGGCCATCCGGGAGGCCGCCAAGCGCGGCGACATGGGATCCG
CCAAGGTACCCACTTACATATACTCTGCGCTATCGATCGATTTGGGCGCAGACGATGCGT
ATCTGCGTGTGAGTTTTGGTTTTCCTCGGTTGTTGGTGTATGAAGGCGCTGGCCAAGGAG
GTGGTGCAGTCGAGGAAGGCGGTCAACCGCCTCTACGAGAACAAGGCCCAGCTCAACTCC
ATCTCCATGCACCTCGGGGAGATCGTCGGTAACCAACACTGCCTGCCTGTTATCATTCTG
CGATTAGATAGCACTCTATTATGGTAAAAAAGTGTAATTTACAGTTGCTGTTCATCATGC
CATACAAAGCCTGAAACTTGGTTCAGTCAAGCGTGCTTTTGTGTGGTTGAATATTGCTTG
CCAAGCCTGAAACTCCTACTTCTGTATTTTGCTTGGAGTCTACGTAGACCAGGAGCTTGT
TAGGTTGTCTTAAAGACATGAGAGATAATAATGTGCGCGTTAAGACACTGATTCTTTTCC
TAGCTGGTACATGATATATGGCAAGGCTTACTTGCTTGTAAATACATAATACCAGTCGGC
ATAGACTTGTAACTGCTATTGCTTGTGACTGAGGGGCTGTTTGGTTTGTGCCCTAACTAG
CCTTACAAAAATCTTCGCATAGCCAAAGCAAGGGCATCACCAAAATTTGGGGTGTTAGCA
CTGGCAGAGCTACGAACAAGAAAAAGCATGACATGGCCCGCCCAACATAGGTCCAAAACA
CTAGGCTGGGAGAGTAAAAACTAGGTTATGATGGTAAAAATTCCAGACTCTCTTTAGGAC
TAGCCATGCTGGCCCGCCCAATGCATTTTCTGTAGCTTCGCCACTGGGTATTAGTGTTAC
TTGGATTCTAGGATAGCACCTCCAATTTCTTGGGAAGATGGTTGGGCCTTAATTTGGTTG
TACCAATTAATATGCTGCACATCAGCAACTCGAGGTCTTTATTTAAAAATTATACAAGGT
GCACATAAATCATCATGATCAAACATTTAGCAAAAGACTAAAAAAATTTCAGAGTGAAGC
AGCACGGCCAATCTTTTGGCCAAGCGAAGCAGCACGTATGCAAAAAATGAAAAAAATAAT
GTACAAGCACGCTTGATGGTATGATCCGGGGAGACATGCGAGTACATGAGCTAGCTAATT
GATTTTTTGGGTCATGTAGCACACAAGCATAACATATGGGGGCGTGATTTGACTGAGGCC
GTTCTCGCAAGGAGGAAAAACGGAGTGGATTTTGCAGCCAATATTTTGGCGGATGATTGT
GCTGCCAAAGAACTAGCCATGGACAGGGGTGCATGGAAGCTTGCTATCCATGTGCCAGAA
CCATGAGTTGGTGGCGAGATCATATGGGTTTCAGCTCTGGCCTACCCCAACTTGTTTGGC
ACTAAAGGCTTTGTTGTTGTATTGGTCAAGCCAAATATTTCTTGATAAGTTAAGCCAAAT
CTACACTGACAGACATGGGCTGTGTTGGGCAAGCCAAATATTTGTTGTCCAACCAAACTG
CAGCCAATATCTTTGGCCACCCCAATATTTTGGTGAGGCCAACTTTGGCTGAAACCAAAC
ATACCCTGAGTCATTTGACTTGAACTGAAATGGCGTGTTGAATTTCTCGCTGTGGTTGAA
ATTCCACACTTAGGTGCCAAATTGACTTCTGCTGCTGGTTTTGGGCTTCAGGTTATGTAC
ATCAGGAGCTTAGGTCGTCTTAAATACAAGGAAGATAGTAGTGTGTGCAATGATACGGAG
ATTCTGTTCCTAGCTGGTACAGGATATATTGTCAACCTTACGTGCCTGTAAATATATATG
TGCTAGTGTACTTGTAAATGTCATTGCTCATGAATCCTTTGACTTGAACTGAAACAACTT
GTACCATTTGTTGTTAATTGCCTAGAAGTTAGAACAAGAATTTCTAAAACTGGCTCAACT
TATCAAGAAGTAGGATTAGCTTCCTTTGCTTCATTCTGAATTGAGGTCTGCACTGATGAT
ATCGTGATCTTTCAGCTACTACTAGGACGGTTGGACATTTGTCGAAGAGCACGGAAGTGA
TGAAACTTGTCAACAGCCTTATGAAAGCCCCAGAAATAGCTGTCACTATGCAGGAATTCA
GCAAAGAGATGACAAAGGTATGATGAAGTGTAGTGACCAGACCTTGTTTAAAGGTTTCTC
TTGTATTTATTGTGTACTCGTACCATACCAGTTCTGAGTTTCTGACTTGATCATTGCTGT
GGTGCAGGCTGGCGTAATGGAAGAAATGGTGAATGATGCCATGGATTCAGCACTGGACGA
TGAGGACATGGAGGAGGAGATTGAGGAGGAGGTTGATAAGGTCCTGTCTGCAATTGCCGG
GGAGACTGCATCTCAGCTTCCTGATGCTGTCCGAAAACAAAAGGAGAAGGTGACACAACC
TTCGACAAGCGAACCTGCAAGGGTAACATAATATGCCCCGTGCTTGCCCCTGCACCTTTT
GCAAATCTCGAAGTCTCTTTGGTATATATGGTGCCCTGGAAACGCCTTACAGGAGTTTTC
TACCGTGTGCAGAGAACTGCCGTAGCGGAATCCGTTGACGACGACGAGGATGACCTAGAA
AAGATAAGGGAGAGGCTGGCCAAAGTGAGGTCGTAGAAGAGATGTGGTGCGCTCATGTGT
ACAATATATAAGTCCATTTGGTTGGTAATCTGACAGGGGGACGCGCTTGTCGCTGACAAA
CTGGTTCACAAACGTAAAGTTGTTGGATCTCTGTTGTAACCTGTAAGGATCACCGTGCGA
GATGTATTTTGTTTGTTTCTCTATATCTACTTGGTGTGAATACAATACGTACATACAGAT
ACTGTGTCAGCAATAACATCCAGAATGCACCCAAGTATTTTATGCAGCTACGCGCTGAAA
GGCTGAAGGCCCGAACTTCTTGTACTTTGCTGTCTCACTTCACTCTTATGCAATGGTTTG
TTCAATTCAGTTTTGCAGGTTCCCCGTCATTGTGGCGTATAAGAGCAACTCTAGCAGACC
CTGCATCCCGCCGGTCCGCAAAACGCGTTTGCAGGTCGTGGAAAACAGCTTTTACGGACT
GGCCCGGGCTGATACAGATGCAGACTTCCCAAACGGATCCGTAAAAAAATATATTCGCGG
AATATTCTTATTTACGGGTCGGCATTGCGGGGTTTGCTCTTTGCACCGTTGTTTTCCGCA
TATCATCAGCCCGCAAATATCAAATACAACGTAATTCAACATCCGAAAACAAACTGAATT
ATTCGAATCAAGCACAATACAATAATCATCCGTATTACAAATAATTATTCAAAACTTGTC
ATGAATACAAATATAAATGAATACAAAAATAAGTCACTGTCCAGCCCTTTGCCAATGGTG
TTCAATGAGATCTTTCTGAAGTTGAAAGTGGGTGTTTGAGTTTTCAATCTCCTTGTATGT
CTGAAGAAAAGCTCTAATGCGGTTTGGGTCTCTAGCTGGTTTGACACGGCTACCCACATT
GTCGTAAAAGAA