Map Locations of contig_63229 (6567 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_63229

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73249 1 2059 bp AK248629.1 Available Available None





CDS Structure of MLOC_73249






Contig Sequence (6567 bp)

>contig_63229 6567 assembly3_WGSMorex_rbca.fasta
CCACCCGCCCGACCCCTAACTCGACCCGACTCGGCTACGAGTAGGACTCCTGACTCGTGA
TAGCTTCAGTTTCCTCGCCTCTCCCGTCCCGTCCCGTGCTGCTGCGCTGTGGGCCCGGGC
TGTCGGCGTCGCGGGCTGTTCGGTTCGGCCGTTCGGCCGCGCCTACCAGGAGGAGTCCCC
GCCCTGCCCTCCCGCCGCGGGGAGGAATTACCGGCCTGCCATCGGCGCGGCCCCGGCGCG
CCCAGGGGCAAAGGCGTCCACCGCACGGTATTTGACCTCCCCCTCTCGCTCGCTCGCTCG
CTCCGCGTTCCGTGTCGGCGAGCCCTCCTCCACCACCTCCTTCCACCCCTCGTCCCGCGG
CCACCAACCGAGCCCGATCCCGGATCCGGCGCCGCAGATCCGGACCCGGCGATGGCGTCC
ACGGCGGCGAGGCGGCTCAGGGAGCTGCAGGGGCAGCCGGGGAACAAGACGTGCGTCGAC
TGCGCGCAGAGGAACCCACAGTGGGCCAGCGTCTCCTACGGCGTCTTCATGTGCCTCGAG
TGCTCCGGCAAGCACCGGGGCCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATG
GACTCCTGGACCGAGCCGCAGCTCCGCAAGATGGAGGCCGGGGGCAACGACCGCCTCAAC
GCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGAGACGCCCCACATCCCCAAGTACAACTCC
AACGCCGCCGCCGCATACCGCGACCGCATCATCGCCCTCGCCGAGGGCCGCGCCTGGACC
GACCCGCCCGTCGTTAAGGAGACGCCCGGATCTGCCGCGCCCGCCCCCGCCAGGAGGCCG
CCCTTGCCCGCCGGAGGAGGGAGCGGAGGCGGTGTCGGAGGCGGCGGCGGCGGTGGATGG
GACGATTGGGACGACGAGGTCCGTCCCGATATGCGGAGGAACCAGTCGGCCGGATCATTT
GCTGGCGCTGGGGCGGATTCGGGGAGACAGCCCACGAGGTCCAAGTCCACCCAGGACATG
TACACGAAGCAGGAGTTGGAGGCGTCGGCGGCCAGCAAGGAGGATTTTTTCGCTAGGAGG
ATGGCGGAGAACGAGTCCAAGCCTCAAGGGATCCCTCCCTCTCAGGGCGGCAAGTACGTC
GGCTTCGGATCCACCCCGCCGCCGTCGGCGAATAGGAACAGCAACGGTGCTGCCCAGGGC
GATGTCATGCAGGTCGTTTCTCAGGTAAATGAAACATATTATTCTTCTTTATGCTATCAA
CTACCCAATATATACCTGCAAACATACCACTTCCATGGAGTATAGTTTTGTGGTTAGAAT
CAACAAATTTGAAAACATTTCCCCAATACCTGCAATAGTTTTGAAAGAGTATGAAAGGCT
ATTTCATAAAATTCATAAAAATGGTTTCTTGGGGGGATCCTATTACAGCAAGTCATGAAT
GGCTATATTGTCACCGCTGTTAACTACGCATCACGTATTGTCCCCGTTAGAGTGCTCGGA
CATCCATCTTATATACTTCATTGGATTTGTGAACACCCCCTCACAATCACATGTAGTTAA
AGTGCCCCTTCTAGCGTGTCTAAACTAAGCTGTGCAGATTGACATAGCTGTGGCCTGTGG
GATCGCCTTTTGTAGCCTGATCCTGATCATCATTGAATTCTCGTTGTAGACTTAATATGG
TTATTATTGTACCCCAGCAGCACTTCTATATTAGCAAAGTACATCTGCAATCATCATTGG
TTACTTGGGGTTATATTGTGTTTGGTGCCAAGCTTGAGATGTCATAGTTGGGTAATGTGC
ATATATGGTTAGACAGTCGTGTCATAATTGGACATTGTTTTGATTTCTACTTTAATCTCA
TGAGTATACGTTCCTTACCATTTTACCTTTTCAGGGATTTGGACGCCTTTCGCTTGTTGC
GGCATCTGCTGCCCAATCTGCTGCTACTGTTGTCCAAGTTGGCACAAAAGAGATTCAATC
AAAGGTACCTTCAATGCTTTGCCTGATTTGTGATATGCAAGAGTTGAATTTCCATAGTCT
AGTTGATCATGAAAAATGCTCTTTATTCACTGTGTTTACCCGGTGTCATGATTAAATCTT
GTAAAACTCACCTGAATACTAATATGATAGGGAGGTGTCCTCCAAGCTAAGGTTTGACAT
TGTAATAACTATGAACTGTCTTCTCTGTTTGGAGCAGTCTTAACTCAAGAATATTATTCT
CTTCATATTTATTTCTACCGCACCTGAAGTTCAGTACCTTCTTGTCTTATTTCACACTTC
CAAACATGACTAGACAATGAATAAACATATCTTGTCATAATCCTTATCTCAGTGGGAAAC
AATTACTAGGTGATATAGTGCATGCTGAATTTTAGATTATTTGTCAGTGTTCCTTATTCT
CATGTTACATCGTGATCTGTCTTTAAGAATGGTGCTTGTCTGGAATGCAGATGAGAGAAG
GGGGTTATGATCAGAAGGTGAACGAAACTGTGAATGTTGTTACCAATAAAACTGCAGAGA
TTGGAAGCAGAACCTGGGGGATTATGAAAGGAGTGATGGCATTGGCCACACAAAAGGTAG
AGGAGTATGCCAAGGAAGGTGGCGGTGGCTGGGGTGATGATTGGCAACAAAGGGAGCAGC
AGAACAACAACAACGAGCCTTACCGCAGGTATGAGCAGGAGACCAGCAATGGCAACAGCA
ACGGCTGGAATTCTCCGCAAGACGGATCAGCGAAGAACCACAATTCCAATTCTTGGGATG
ATTGGGATGACCAAGACAAGAAGGAAGAGCCTGCCAAGACAAGTCAGGGCAGCGACTCGT
GGGCCGGCTGGGACGATGCGAAAGATGACGGTTTTGATAGTTACAGCCATCACAGCCCTG
CCAACAAGAGCGGGAGCAATCAGAATGGAACCGCCGGTGGGTCATATTGGGCCGACGGCG
GCTTCCGCTGATGCTTGTCTCTTTGTGAGAGCCATATACTTTGCAGAATTGTTATATGCC
AGAAAAGATGTGAGCGTCCGGTGGTGGTTATTATTTCAGGATACCGAAGTGTTGGAGAGT
AAAAGAGTTTTGTTTTTTTTGTAAGTTGTCTACAATTGTTATGTCTAGCGGCATGTTCAT
ATGGCCAAGCCTCATTTGAAACTGCCATCCAGCTATTAAGAAATGTCGAATTGAAATTGT
AATCTACACATACATAGTACTTCCCTGCAGATTCTTTATTCATTGTACTGATTTGTCGTA
GTTGCAAGTGGCAAGAGGGGTGGCACATGGTTGTCAATTCTGCTGCATTATATATTGTGA
TCTTGTTGCCATTGCTTTTTTGGCGCCGATCCACCAGCTGATAAAGGCACTGAGACCTTC
GGTGTCTTTCTGGCCTTTGGTGCGACGTGATTTGCCTTTCGATAGTTGATTCCATCCAAG
GGCTGACTGTGTGTCCACTTTTGGAAGATCCTGGCCTTAGTTTGATACTAATGTATTTTA
AAAAATTGGTGGGGATTATCCCGATCAAATTCCTAAATCTCCATATGTTCCAAAGCATCA
TTTGGTTATAGTGTATTTGACATATTTCATCTCTACAGTTTCTTGCAAATCTTCATACTC
TAGTGCATTTTTCTCAATATCCAATACACTACCCTTATCTAATGGATTCAGGATAAATAG
GGATTTGAAGGGATTTCCCTAAAAACCCTAGTAAGAAACAAGGCCATAATGTTCGCACTG
AAAACTCCTATGCCCTTGTAATGTCTCAAGTTATTGCCCTGATAATCTTGTTGTATGGCG
TTGAGTGTTGGTCAACTAAAAGACGACATATGCAGTAATTAGGTGTAGCGAAGATGTGCA
TGTTAAGATGGATGTGTGGCCATACAAGATAGCGCCGATTAAAGAGAAGATTGTCTAATA
TCGTCTGAGATGATTTGGTCATATTCAACGCAGACTTTCAGAATCTCTAGTGCGTAGTGA
ACGGCTAAAACGTGTTGATAATGTTTAAAGATGTTAGGATAGGTCGAACTTGACATGGAA
GGAGTCCGTAAAAGCTTAAAGAATTAGAGTATCACCAAAGAACTAGTCATGGACAGAGAT
GCATGAAAGCTTGCTATCCATAAGACAAAACCATGAGTTGGTCGCGAGATCTCGGTCTCA
TTTCTAGCCTAACCGACTTATCTGGGACTAAAGGCTTTATATTATTGTTGTTATTGTTGT
TGATGCTGTTGTTGTTTTATGATAGACATAAATACAATATTTTACTTCAGTACTTCCTTC
GTCTCAAAATAAATGTCTCAAGCTTAGTATAATTTTATACTAGAACTAGTACAAAGATGA
AACATTTATTTTCGGACGGAGGGAGTACAAAGCATCAATGTGAGCATATAGTTTTGGCCT
AGCGCAGAAGCCTTAGGTGGTAGTCAACTTGCCCTATTTTTTTCTATTTGTGGATGTACT
CCAGCGTGTAATGATCATAGGATTATCAGAGTCCTCATGTGCAGAGACAGAGAGGGTACA
GCGAGGAAGTGCACTGCTGGGGCCTTTGCTTAGTTGGAGTATGTGCATGCCAACTTGTAT
CCAGAATTCGACCATGTGGTCCATGTGGGTCACTAGCTTCAACTTTCTTGTTTTGTGTAG
TATGGACGATGGACTCTCCATCATTGGATCCAGTATAAAATATTCTCAGTGACCATTTAA
AAGTGTAATATGACAAATTCACTGTTCTGACCCAGAAGACGTAAATAATTCACAGAACGA
ACTCGTCTCGAAAAGATTTTATAATTTTACCTTTTTAAAAACGCCAGAAACCGTGACGTT
GCTGCAGCACTTAGAAGCATCAGTCTAGCATATGGCGTTTCTAATCCATATTCAAACGCC
AGTCTACCTTGCGTTGCAGTGTAAATAGAAACGCCAAAGGTGTTGGCGTTGTTAGCCATG
CACCAAACGCCATTGTTCAGAACCCTAGTCCATGCATATGCATGCGCACAGCGGAACAGT
GAATTTCGCCGACAGGGACACTCCACGCAGCAAAGCGCCAGGGAGCCGTACTCGGGACGA
GCAAAGACGCAGCAAGAAGCAGGAGAGGCCAAAGAAAGAGAGAGAAGGCCGGGCCATGGA
ATGTTTACACTAAAGTTATCATAATGTTTACACTAAAGTTGCCAAGATGACACAAAGACA
TCCAAAATGCACACAACTTGAAAAGTAAACAAAAAAGAACGTGAAAAAGTCTTGCCAGAG
TGATCAACTCCTCTGAGAAGCAGCACACAAACCACCACCAAAGACAACACCCGAAAAACA
TAAACGACCTCCAAAAGCGACGCCTTCAAGAAGGAAACAGTGCACAAACGCTGTCGTCGC
CCGATCCAAGATCATATGTTCTTACCCTGGAGAAAGACCGAGCTCTCAAAACAATGTCTT
CAACAAGACAATTGTGAGGCACAACCAATGAAGGCCATGCCTTAAGTTTTCACCGTGAAA
GTCACGACTCGGCACCCGAGAAGTGCCATCGGAAATGAAATCCTTCAGTGCTGCCGCCCC
CACTTATCACCGTTGCTTCTGAAAATTAACAAACACGTGGCTGACTCCATGGCCTCGAAG
CCCCCCCAACCTTACTAATCCTCCGATCCTAGTCATTGTGACTTTCTCCGCCACTGTTTG
TGCCATGGAAATCGAGATACCGGGATGTCCCATGGTGTCAACAACCAACAGAGCTTCGCG
GCACGCCCTGATGGAGTCACGTTGGTTGATATGACGCGCACGACCGGATCCTGTCTAATT
CAGATATCCTTGGGCAAGATCTCCAGCCATAGTTCCGGAACACGTCGACGACCAGATCAA
GGAGGAACGATCATGCAGATCGTTGCCTTTATGCGGTAAGAGCACAAGGACTGCCACCAC
GCCGGCGTCATTGATGCCAACCCGAGCACCACCACCGATGATTTCAGTTACAATCCACAG
TCACATGTGAAGGAGGAATACTCACAAATCAAACATCTGACCGGGATGTTCGCTGATCTG
ATTGGATGCAACTGCCATGAAGAGCATCGCCATCAGAATCCGCGAAGGCCACCGGCGATC
CCGAGATCCGTCCATGGCACGGCCCATACAAGCACCATGGACGTCGTCGCTCCCCGGCGA
GTAGCAGCGCCCAGATCGGGCCATGGAAGCCACCGAGCCGCCAAGACCAAATCGGGCCAT
GGAATCAGCCGAGTGCAGCGGCCAAGGCCAGCCCCACCAGCTGTCGTGTAGAAGCAGGTA
CATCATGCATGAGAGAATCGATCTGAGGTGCCACACGATCGCATCGGTCATGAGGACGAA
CGTCGCTCATCAACTGCTAGGGCCACACGAGACAAGGATCCCACCGTCGCCGGCTGCCGG
CAGGCTTTGCCCGTAAGTGTAAGCGAGTGGCGATGAGAGGGAGGCATGCCGGTAGGGACA
CTAGCAGCAGCAATCTAGTTCCGCCCGTGCTGCCTACGCAGGAGACGCGGGCGTCCTTCC
TTTTGTTGGAAATATGCCCTAGAGGCAATAATAATTTGGTTATTACTATATTTCCTTATT
CATGATAATCTTTTATTATCGATGCTA