morexGenes - Barley RNA-seq Database

Contig contig_63208

Source Contig contig_63208

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_63208 (2347 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_63208

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_73235	3	839 bp	MLOC_73235.1	Available	Available	LOC_Os01g40630.1, FRAME:-1, EVALUE:2e-54, 13101.m04159 protein uncharacterized protein PA4923, putative, expressed

CDS Structure of MLOC_73235

Contig Sequence (2347 bp)

>contig_63208 2347 assembly3_WGSMorex_rbca.fasta
ACTAGTTTTAGCCTCTCTTTAGTCAGGNNTGCTTGGAACTTTAGCCTCTTAAGGAGACTA
GTTTTAGTCAGACTAGTNNNNNNNNCTTGGATCCAAGCACCCTCTTAGTAAAAGTGCTAC
TAGTTATGTTCAGCTACTTGTAAAAGTACTACTAGTACTACTCCAAGGGCAAGCGAAGTT
ATTACTGCTACTACTAGGTTGCATATCCGATGAAATCCAAAGGCAAGGCAAGCGAAGCAG
TAGCTTTGGTAGTAGTAGTAGTACATTTAAAAGGGAGCACGCATTGGCGTTGGACCGGCG
CACTATATTCATGTGAGGAACGTAAATGCAGAGAGAATTGAAGTGGATATGGCAGGCACG
CATGCCTAGCAAAATGGAGTAAAAGCACTAGAAACATGAACCAAATGGGGCAGGAGTATC
ACCTCTCTGGGCATCAAGGACTTGGGGATGACCCTGCCAAACAAAAGAGAAGAGCAAACA
GATAGATACATCAGTTTTCAGCATAAAGCAGTCAAACACAGTAAGGCCACAGCTTTTTGC
CATGGCAAGAAACTGGCAAAACCAAAGCCCAGTGCTCCTAGTGTAGTGCAGTCTGCAGTG
TAGGCACTGCACAGCTAGCTACAGGGTGCCGTGCAATAATTAGAGATACGTCCAAAGAGG
AGGAGTCCATTTGGAGCATGCAGGCTAGGAGCCTTTCGGAAGCGAGTCCAAAAGGTGGTT
CCACTCCTGTGAATGGAACCCAGACGCATTCAAAATGCCTCCCACTACCTGTGGCGATCA
AAGCAAAGCAAAGGCTGCCATTTTGATACCAAGAAGGCGCAGGAAGCATGGACGCACGCA
CAGGAACACCACTCATCAAACAAGATAGATAGATAGATGGATGGATGGAGCACCTGCTGT
GCAAACAAGCAGGAGAGAGCTGCCTATGATGCCATGGTGGGGAGGGAGGCAAGGCAATGA
AATGAACTTACCCAATCACATGTCGTCCTCCATCATGAACTGCGTGGGAGACCAGGCCCA
TGAGCCCAATGGAGCCTCCTCCGTAGACCAGGTCGATGCCCCTCTCCACCTGCAACACAA
ACAAGAAACCGAATTAAAGGTGGGATTTTATTGTTTTGATGAAATACTCCTAGTACATGG
AAGAAGCAAAACAAGAAGGATTGTTTCCTTCCGGGAAGAAAGCAAGCCATTATTGTCTTC
CATGACCATTTCGGAGAGCAGAAATGGTGCAGCAACCATTTGTCCAGCGCGTGCGGTGCG
TGAGGCGTGATCGAGCTACTATGTTAGCTGCCATGCCACATGTACTAGTACATGGTAGTA
TGATCATGCAGGCGTGATCCATGCCGATGCAGTGCGCTGTGCTGTGCACCCCACGACGTT
CACGTTCTACAGCTCAGCAGCAGCAGGCAGAAGCTGGTGACGTGCCATCCCCAAACACAC
ACGAACAAGAAGGTCGACATGTGGGGGAGGGGGCGACCGAAATAAAAGAGGGGACAAGAA
GATTTCCATTGCCGCAAAACTTAAAACCCAAAATAAAAGATTTCTATGGGGGCTGCCTTC
TTGGCGCGTGAGCGTGAGCGTGACAGGGAGAGAAGGAGGAAGGTGATGACGTACCAGCTC
CTTGCCGAGCTCGACGGCGGCGTCCTGGTAGCTGGCCTTTCGGCCCTTGGCGCTGCCGCA
GTAGACGCAGATCCGCCTGAACCGGGAGCGCCTGTCCCCGCTCTCCGGGGCTACTCCGCC
AGCCGCGCCGGTGCCGGTGTTCTTCTCTGTCGTGGCCTCGACTGCCATCGCCTCCGTGGG
TGTTGGTGCTAGGGAAGGCTGGTGGTTCTTCGCTCCGGGTAGGTACTGCTGCTGGTAGGG
GAGGGGGAGGGGGAGGCGAGGTTGTGACTTGAGTTGAGCCGGATGTCGTGGGGGGAGGCG
TCCATTTATAGAGAGAGGGTGCTTCTGCTTGGGCATGGATGGGTGTTCGTTGGTTGGTTG
GTGGGTCCAACATTGTTGGGCTATGTCTTCCCCACAACTGACCTGAGAGTACACTACTTT
TCTCTCTCTATTTCTTTGGTTTCTTCTTGAAGAAAAAAGAAGGTTTCGTAGCTTTGCGTT
CCATTCATATTTGTTTGGGGTCCTTCTAACCCTTTGGTGCTAGTTTTTACATTTCGTCCT
ACTAATTTTTGTTAGAGTAAATTAGGTGGTTGTGTGTGTAAGAGAGACCGAGACAAGAAA
CGTGACATTAGTTCGGCCAGTGCTAGGCGCCGGTGTGCCGGCCCGAAGGCTAGCGCCCGT
CGCGCAGCAGCCGTCGGATCAGGGCCCCCCTGACCGTCAGATCTGCTCGCGCGAGCCCCC
ACCGCCC