morexGenes - Barley RNA-seq Database

Contig contig_63077
Source Contig contig_63077
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_63077 (8112 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_63077

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_73160	4	5852 bp	MLOC_73160.1	Available	Available	LOC_Os05g05860.1, FRAME:-1, EVALUE:0.0, 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed
CDS Structure of MLOC_73160

Contig Sequence (8112 bp)

>contig_63077 8112 assembly3_WGSMorex_rbca.fasta
GGGTGTGGGGCGGGGTGCGCTGCGGGCGGCGGGGTGCGGGGCGGGGCGGGGTGCGGGCGG
CGCTACGTGCGGGGCGCTGTGGGGCAAGATGCAGGGGCGCGCTGCGTGCGGGGGAGGCGC
TGCGTGCGGGGCGAGATGCAGGGGGCGCGGGCGAGATGCAGGGGCGGGGCGGCGCTGCGT
GCGGGGCGAGATGTAGGGCGGGGCTACAATGCGCTGTTAATTGCTGTTAGTTGTCGTTAT
TGCAGAATTTGCTGTCGGATTGCTGTTAATTGTTGTTAATTGCTGTTATTGCAGAATTTG
ATGTCCATTGCTGTTAATTGCTGTTATTGCAGAATTTGATGTCCATTGATAGCTGCATTA
CAAATATAGCCGTTTGAAAATATATTCGTTGAAATATACACGTCCTAATTTACACGTTCC
ATTGAAAAATTGGAACGTGTATAATTTAACAACGTGTATATAGACGTGTAAATGAAGATA
TACATGTTCAAATTTACACCATCAACTAGAGATGCTCTTATAACTGGGTAGAGCCAAACG
GATAGAAGGAAAGGGTTGTGAGTTCGAATCTTAGTATAGATATAGTCATATAGATATATT
CAGTCTTTCCCTGCAAAAAAAAAAAGGGTCTGACAGAGTTATAAAAAGGGGCACACAGAA
AAAGTAGCACCGATGATCATTGCTTAGTGCTCAGAATAATGCAAGCGGGAGCAGCACAGC
ACCTACAAAGCATGTGCTCCACCGTCGGGTCACGTACCCAGCAAGATCACCACACATGTT
TGTTTTGCTTTTAGAAGAAGATTACCACATAAGTTAGTCAACGCATGAGAGCCATGCATT
CATCTCGTTTATGCAGCGCTGCCGACTGATCTACAGCCATACATTCCACCTCGTTTGTGT
GGCGCTGCCGACTGATCTACAGCCATAAATTCCATCTCGTCTATGTGGCGCTGCCGTGTT
AGTTTTGTACAACGCCACTGCGTCCATACATTCGCATGCCCCATCCGTTTGGAAGGAGAA
AATCCATGCAGACCTTACGTCTACCAAACAAAAGTTGCGTACCACAAAGCAGACAAGTCA
GCAAAAGCTCCAATGGAAACATTAGCATAATAATCCGATAGAAAACACAAAATTAAATAT
CAGCCCAGCCGTAATTAAATATGAGCCCAGCTACGGCCGCCAATCCTAGTGCTGCTATTA
GTATCGCAGCTTACAACAAGGCCTGTTCTGGACACACAAGGAAACAAGAGTTGGTAATGT
GGCATGGTTCTGCATCAGCCAGCGGTCAGCAGCCATTTTCTAATCAACAGTCTCGTCGTC
CTTGTCAGTTGCCTGCGGACCGGTGGACGAAGGGGAGTAGCCCGGTGCAGTCGGGGAGTA
GCTTGCGCTGGGGCTGCACGCTCAAAACCGCAATTGTCAGAAGAGCTAATTGCGCACTTT
CATCAGGGGTAAATGAGATAAACCTCACGCATTATTTACCTGTAGTTCGGAGATGTCGGG
CTGTAATCTGGGCTAGGTCCACCGGAGCTAGTGTGCGGGCTGCAGCACTCACGCAATGAG
TTAGGAAACCCATGTATTATTGTTGCAGCAACAGCATTTCTCTAAGTTAAAAACAAGGGG
TGATTATCAACAGAAATGGGCTCACCTTGTCGGGCTGTATGACGGGCTTGGTTGTGCATA
AGATGGTGAGGTGGGCGAGTAGGTCGGTGAGGTCGGACTGGAGAGGAGAAACGGAGATGT
AATCAAAATAGAGCATAGACATGCATGGAGCACAACACCAAAAGGAAAGTAGTCTATCTA
TCAACAGAATACCTGTAGTTCGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTG
CTCGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTCGGTGAA
GTTGGGCTGTAGTTCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGC
GATGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATGAGGGCGAAGTAGGGCTGTATGAG
GGGGATGTAGGGCTGTATGAGGGCGACGTCGGGCTGTATGAGGGCGAAGTCGGGCTGTAT
GAGGGAGATGTAGGGCTGTATGAGGGAGAAGTTGGGCTGTATGATGGAGAAGTAGGGCTG
TAAGATGGCGAAGTCGGGCTGTATGCAGGAGATGTCGGGCTGTATGCTGGTGAGGTCGGG
CTATAAACCGGAGATGTTGGACTATAGCTCGGCGATGTGGGGCTGTAGCTTGGTGATGTG
GGGCTGTAGCTCGGAGACGTGGGGCTGTAGCTCGGTGATGTGGGGCTGTAGCTCGGTGAT
GTTGGCGAGTATGATGGACTGGTCGGAGAGTATGATGGACTGGTCGGACTGTAGGAAGGG
GAGCCAGGCGTATATGATGGAGATGTGGGACTGTAGCTGGGTGATGCAGGGCTGTATGAT
GGAGAAGTGGGACTGTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGACGGACTG
TAACCACCTCCAGAGGATGGGCTGTAGTTCGACGGGACGGGTGAGAATGCCATGCCTCCA
ACATATGGTGAGAACTGAGCATCTGTAATGGGGGAAGCCCTGAAATTTGGACTCAGCATT
GGTGACATCATTCCTCCATCACGGTACGGTGTCGCAGACATGGGCGAACGCGCTGGTGTC
ATGCCGTAGTCCAGACCTTCAACATAGCTTGGGAGTTGAAGCTCAATGGCTTGCTGCAGC
ATCTGGTCATTCAGATACAATCCACAACCTCCTGTACCAATAGGAGCAAGCTGGCCAAGC
ATAATGTTCTCGGTGACACCTCTCAGGTAATCAGATTCCGCATATACAGCAGCATCAAGC
AAGATATCCACTGTTTCTTCAAAAGAACACCTCATGAGGGGCCCTGTGTCATTACGATTT
ATACCATGCCTAGTAATAGCCATCAGGTGACCTCTGTATGTCATCGTATCACAGAGAATG
GCCAGATGCCTGTAGTTCACATAAGACCCGTCAAAAGATATGACCACCCTCAGCTCATCC
AAGAGAGACCTGCGGACAGCCTCAATCCCAAGAACCTCAATCACTTCAATCAAATGGTTG
CTTGTTGTCCTTGTAGAATCAACATCCTCATGACACATAACGGCCAAGAGGTTTACACCT
TCTGTATCAAGCATCCACTCGTTATCTGGTTTGAAACCTTCACTTTCATCAAATTTATTA
ACCTTCCCGTATTTGATGAAGACCTTGTTAATATCTGGAATGCCTCGGAGGGCCATCTCA
GTCAACATATTACCCTCAATCTTCTTGAGGAAGACGTCATCCTCAGCAGATTCATCCTGT
ATTTCTCCTTTTGGAGCTTCGTCATTGGTAATGCGGACACGAAGGATGAGCTTATCTGCA
TTATCATCATTGAATATGCATGACAAGTCATCATCAAATTCATGATTGATCTTCTCTGCA
ATATCAGCCATGCTCAATTTCTTATCAACCATCATCTCACGGTTCAGCTCAATACGCAGC
AGCCAAGGAGAGATCTTATCCGGGTCAATATCCTCATCAGGCATTTCATAATATGACCTG
ACAAATTCCACATCCTCTTCAATGATGGTGCCTAGAGGATCAGGATCATACCATATCTCA
GTGGCATGGGTCACACTACGTAGTGTGGTGTACTCCAAGGCACACTGGACATTCTTAGCC
AATTCTTTCTTCTTGCTCACCTCAGGCTTTAGGAAAACAGATAGAGATGGAGTCTTTATC
TTCTTTGCGACATTAATGATCTCTCTTAACCTGGGAACCCCAAGGGTAACATTCTTAGCA
CTAACACCAGCATAATGGAAAGTATTCAGAGTCATCTGAGTTGCCGGTTCTCCAATGGAC
TGTGCAGCCACACATCCAATCATTTCACCAGGAGCTACCAAAGACTGGAGGAATCTCGAT
TCAATCTCACCAATGACCCATTCAAAAGATTCCTTTGTAAGCCTGTATTCTTTCAATACC
CTCTTGCTAGCAAATGTGCTACGAAGCAGGATATTGAAGAATAAAGTAGCGTTCTTCTGA
GCTTCGATGCTCATGGCATCATCACCAGGGACAACCTTAAGTCTTTCTTGCAGCTTATCT
ATCGCTTCCACAATTTCCATTGGGTGCATGTCAGAAGGTCTTCTTAAGTCAATCTTGAAA
GTCTTCTGAGCATTCCAGATAAGCCGCTTGAGGTTGACAGGCATAGGCCATGTATTGTCG
CCAGTTGTGGTAATTTCAGTCCCAAGCTGCAATCTGTCAGCTTCTAATTTCTGAACCTCT
GCCTCAAACACATTTCTGAATTCACGAATGGTCTTCAAATCATCAACATGGTCAGGCAAC
ATGTAAGTAGGCCTCCAGTTCTCATCATCAAGTTCATAACGAAATACATTATCAAACTCG
GCCTTTTTCATCTTCAGGGAGTCCAATTTCTGTGATTCAATCCAAACAGCATCCATGCCA
TCTTCTCCATACAAGAATTGAATAACATCACCCAGCGAATTTCGAACAGTACCATCATAT
TTCACCATAATGTCCTCCATAGCCTTCACGAGCCTCCGTTGTATATATCCCGTCTCGGAG
GTTTTCACAGCAGTATCAATCAAACCTTCTCTACCACCCATAGCATGGAAGAAAAATTCC
TGTGGTGTCAGACCTCGAAGGTAGGAGTTCTCAACAAACCCACGACTTTCGGGGCCGTAG
TCATCTTTCGTGAAGTGGGGCAATGTACGATCAACAAAACCAAATGGAATCCGCTTGCCC
TCAACATTCTGCTGTCCGACACAAGCAGTCATTTGCGAAATATTAATGAAACTGCCTTTT
GAGCCTGCAGTGACCATAGCTTTCAAATTGTTGCTCTCAGACAAACTCTTCTGAGCACTA
CTTCCAGCATCATCACGAGCCTTGTTAAGAACCTAACATGGAAAATGGATGTCAAAATAA
GTCCACCAAAAAACTGATGACTTGGCTTACTCCTTCCAAAATGGAAAAATCGGAGTCTCC
CAAAAAAAATGATGGAAGGATCAAAGTCTTCCAAATGGAAGAATAAAACTCTCCCAAAAA
CCTTCCCAGATGAAAGAACCAAACAAGGACATTCAGCAGTACCTGATTTACTCGGTTTTC
AAATGATTCCATCATTGTGCGTCCTGGCTCAGGTTCCAAGTTCTTCTCTTGTGCTTGCTT
AATTAGCTCCTTCACCTCATTCTTAGCTGTTCCAATTGTCTCGTTAATCTTCTCCATAGT
AGCTGCATCTGCAATTGTATCCCCAATACCAATGCTGAAACCGTTTTGCAGAAGCCAGTA
GTTGACCAGCCACTGTGTATGACCCAAGAACTTCCGTGCAGCATCTGGTCCTACCTCTTC
CCTGCAAACAGTTAAAACAACCAAAATTATTCAGCAGAGAACATGTGTACCAAAAATAGC
AATGCAGCGATTATTACTTACCAAATAACATGAATAAGACTTCCAGTTGATGTCCCCAGT
GTTTTTTTGCAGAGTGTACCAGATAGAAGCTCTCCCTTTTCTATACGGACCATAGTATCT
CCAGGTGTAATAAATCCACTTTCTGTCTCGGCATGCCAGGCTGAAAATCTTATTAAATTG
ATTAGCTTGGGGATAATCAAGTTGAAAACTTGTTTGCCAGTCCAAATCGGCCTTGGTCTC
AAAATGGCAGGGGCAGGGACCTTCCCATCAAAATCTTCCCACCACATTAAGATGTTCATA
AATACATCCTGGGAGAAATTTCAGAATATTAAGCTACAAAAACTACACAGACAATAATAT
TAGATGTTTAAGCAGAGTACTGTTAACCTTTTCAATAAGAGTGTCCCTTTTGGTAATTTT
TCGACAACCAAGAAGTGTGTCCTGGACAATACCCATAACAGGTCTATTCGCTTGAGGTGA
GACAATACATTTTGGCACCATCATCAACTCTAAAACTTCAGCTCTGGTCTCAAATGACTG
AGGAACATGCATATTCATTTCATCCCCATCAAAATCAGCATTGTATGGTGATGTGACAGA
AAGGTTCAGGCGGAAAGTTGAGTAGGGCATAATTTTAATACGATGACCCATGATAGACAT
TTTGTGAAGACTTGGTTGCCGGTTGAAAAGAACAAAATCTCCATCATTGAGGTGTCTTTC
CACCTGAGAAGTCAATCATAAAACAAGTGAGAGCCAAAACAAAAGGCAGTTTTTGTTATG
TCACCATTAAAACAAAAGATGCTGCAACTATGTCAGCACTAACCTTGTAACCCAGCTCCA
AATGCTGATCACTACTTTTCTTCACATAGCGAAGATCCAACCTCTGACCATCTTCCCTGA
TAATGTACTTTGCACCTGTCTTACCTGGGGGAGGGTGAGGCCCATATTCTACTAGTTCTT
TCAACCTTGTATGATCAGATTTAGACATAAATTATCAAACATCAATTCAAAAACAGTGAT
TACATAAGATGCCTCAATAACAGAAACTTAACCTACCTCTCGATGTTATATGGAGTGACA
GTTTCTGGGTATGTCAGATTCAAAGCAATACTCCATGGCACCCCCAATTGATCAATGTTG
ATATTCGGATCTGGTGTGATGACGGTACGAGCTGAGAAATCAACACGCTTCCCCATTAAG
TTTCCTCTAATCCGACCTTCTTTTGCTTTCAGCCTGCTGCATATTGACTTAATAGGCCTT
CCAGAACGCTGAGTGGCCTGGATATTTCGACAACAGATAATAAGGATAACTTGTCCCTTA
GTGATTAACATGGAGAGTGCACTTATAGACTACTCACCCTTGGTTGTCCAGGGAGATCAT
TGTCGAAGTACGTTGCAATGTGAAACTGCAACAACTGAGCAAACTCTGTTATGATGTGAG
CTGGGGCTCCATTTCTCTCTTGCCTCCTCAAATTCTCATTATGTCGAATTATCATCGCTA
ATTGATGAGTCAAATCATCCTGTCAAAACAGAAGAAACAGTGAGTGAGAGGGTGGGACCT
GTGAATAAACCATAGGATCCGTCCATAATAATTTTAGTACTGGGCTAACCTCACTTCTGG
AGGAAGTATCCATCATGACAGATGGTCTCACAGGCGGTGGAGGAATTGGAAGGACTTGCA
GTATCATCCAATCAGGACGAGCATATTTAGGGTTCAGGCCCAACAAAAGACAGTCCTCAT
CACTTATACGCTTGAGAACATTAAGGACCTGCCCCAACAAACAGTGATGTGAGCCATGTG
GTTAACTGAAAATTCATAGAACCTACTGAACTGAGTAAGGATAATGTAAATACCCTCTCG
GCAGAGAGAATTTGCTTTCGCTCCACTGGTTCAGGGAGTTGATCTTGATCATCACTTTTC
TTCTTTGTTGCTTTAAATTCTGCAACCATCTTCATACCATCAACTGTGATATTTGGCTGC
TGAGCACCACAACCACTTCTTTTCTTCACTGGCTCATCAGTGTCCTGCTGATCTTGAACG
TCAAGTTCATCACCCCCAGCACAAATCTTTTTACTCTTGCAAGCATCATATATTCTTCTT
AATCTATGTTTTGGGTTCCTGATTTTCAGAGCCTGCTTGAACTTGGTCTCCTCCTGCAAG
ATATCACTGATAAATAACATGCCAAGATCAAGGCACACAACCATAAATGGTCCGCGCTGT
GACGATGTTTAGTAGCTAACATGCAAGAACAACCTTGTTCAGAATTCATGAGAAAACTCC
AAAGTTGAGTGTAATTAAGTTGCGTGATTATGATTATTTTACCAAAGACAATAATTAACA
AAACAGGCATTGCTACGGGGACACATCATCAATGCATTGTTCTTTTGTCTGATGCGGTTC
TACCAATGCAGGCTCTATTGAAATTTCAGAAAGATAATCTTGGCTTTTAATGTTGAGTTC
CAGGTCCATAACAAACATGCAACAACAACAAAGTAAGTCCAGCAGCACCACTGGCGGCAC
GAGGGGTATTCCTGGGACTTCCCTGGAATACCCAAGATTTGGGCTATTTTTTTAATAGGC
ATCTCCTAATCTAATCAGCCTACTCTCTGTTTCCCCAGATCCCCTTCCCTCGATCCCTTT
CCTGCAGCCCTG