Map Locations of contig_63072 (6702 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_63072

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73159 4 2351 bp AK358554 Available Available None





CDS Structure of MLOC_73159






Contig Sequence (6702 bp)

>contig_63072 6702 assembly3_WGSMorex_rbca.fasta
TAGATTCACTCATTTTGCTCTGTACGTAGTCCCCTAGTGAAATCTCTAAAANNNNNNNNN
NTTAGGAACGGAGGGAGTAATTTGCAACTTTTGTCATATTGTTCATTGATGTTTGTGCCC
TATTATTTCCCTACTCAAGGTAGGATTTCTGTGTTAAACCTAGCCTGTTGTTCTTTGTTT
ATCTGCTTTGTTTCCTAGGTCTTTATTGCAAGTTTTGCTGGTCAGCTAGTTGTCTGTCCA
ACTCTATTTCCTGTCAAAATTTGCTGTTCTACCAATACTTTTTGTACAGCACTTCATGGA
TGAATTTTTGATATAAATCTGTCATGCAGGTGTATGGAAGCACGAGAAGAGTGATGGCCA
TGAAGACTATGGTCTCCTTGTTAGCGAGCCAGCCAGGAAATATGCCATAGTCAAAGAGCT
TGATAGCCCTGTTACTTTGAAGGATGGGACAGTTGTCCTGCAGTTCGAAGTGAGGCTTCA
GAATGGCCTCGAGTGTGGAGGTGCTTACCTTAAGTACATTCGCCCTCAGGAGGCTGGATG
GGATGCCAAGGAATTTGACAATGACACTCCTTACACAATTATGTTTGGTCCTGACAAATG
TGGTTCAACCAACAAGGTTCACTTCATCCTGAAGCACAAGAACCCCAAGACTGGCAAATA
TGTTGAACATCACCTCAAGTCCCCACCCTCTGTCCCATATGACAAGCTCTCTCATGTCTA
CACGGCTATCTTGAAGCCGGATAACGAGGTCAGAATTTTGGTTGATGGGGAGGAGAAGAG
CAAAGCAAACTTCATGTCCGCTGACGATTTTGAGCCAGCACTTATTCCATCAAAGACTAT
TCCTGACCCTGACGACAAGAAGCCAGAGGACTGGGACGAGAGAGCTAAAATCCCTGATCC
AGATGCAGTGAAGCCTGATGACTGGGATGAGGATGCCCCAACAGAAATTCTGGATGAGGA
GGCCACCAAGCCAGAAGGATGGTTGGATGATGAGCCTGAGGAAGTTGATGACCCAGAGGC
TGCTAAGCCTGAAGACTGGGATGATGAGGAGGATGGCGAGTGGGAGGCACCAAAGATCGA
TAACCCCAAGTGTGAAGAGGCACCTGGATGTGGTGAATGGAAGAGGCCGATGAAGCAGAA
CCCTGCATACAAGGGCAAGTGGCATGCACCCCTGATTGACAACCCCAACTACAAGGGAAT
CTGGAAGCCCCAAGAAATCCCCAACCCTGAATACTTTGAGCTTGACAAGCCTGACTTTGA
TCCGATTGCTGCTACTGGAATTGAGATCTGGACAATGCAGGATGGCATCCTTTTTGACAA
CATTCTAATTGCTGATGATGAGAAGGTAGCCATGTCTATCTTGGAGAAGACATGGAAGCC
TAAGTTTGTTGTTGAGAAGGAAAAGCAGAAGGCTGAGGAGGCTGCAGCAGCCGAGTCAGA
GGACCTTTCTGAGTTCCAGGTAATTCATTCTTCCGATGTTTCCGTTACATTACATTTGCC
CTTCATTGTGTTGCTGCATGCATGTTATGGCTAACTAATTTGGTATGTGTAATGCAGAAG
AAGATCTTCAGCGTTTTGTACAAAATCGCCGACATTCCGTTCTTGGAACCATACAAGATC
AAGATCATTGTAAGGACCAAGAACCTTTGTCTCCTCTGTTCAAACGGTCCTGTGCGTTCT
CTGAAAAATGACATATAATCTCTCTTTGTCTCTCAGGATTTAATTGAGAAGGGAGAGAAG
CAGCCCAACATTACAATTTCGATTTTGGCCTCAGTTGCTGTCATCCTTGTTACTGTGCTC
TTCAGAACCATTTTCGGTGGCAAGAAGGCAGTGGTATGTTATATGTTATTTTCCGACATG
TGCCATTGCTGTATTTCTTAAAACCTGAGTCAAACGACTGACCGCAACTTCTGCTTCTTT
CAGGCACCTGTGAAGCCCGCTGCTGTGGTGAAGAAGCCCAGTGCCACGGAAGCCGATGCC
GCCGGAAGCAGCGGTGACAAGGAGGACAAGGAGGATGAAAAGGATGACACGGCTGCACCA
CGCAGAAGGTCGCGAAGGGAGACGTAGGCCAGACCTTCACATTTTCGGACGTCTCGGTCC
TCGCCTTTTTGTGAACTCCTCGAGTGTATAATCGAACAGTCTTGCCGCCGCTTCAGCTGC
TACCCCTAGTTTTAAGTCACTAGAATCTACGAGCCGGTGAAGCTTTGTGTTGTTTGTGTG
ATGTCCTGAATCAGCTAGAAGTGATTTTCTTTTTCTTTTGTATCAAATGAAACTTGAAAG
GATCTTTTGATATTTAGATGATGTTCATTTACTCAGTGGCGATTGTACCTGGTTAAATCA
CAACGAGTCTAGGGCGGCTCAGTTTACTTTCCTGGACCGATGATGCGCCCGGATGTCTTT
TTATACGAGGACTATGGAGGACGGTCTCTTTAATTCAAAGGATTTTCAAAACACGGGAAT
ACCAAAAAAAAGGAGTCATGTCTGTTGAGTAAATAGGTAATTTTTTGATTAAATTAATTC
ATGAAATAATCACTATCATAATATTGATTAGATTGATGAGATACTGAGGGCCAGACTAGC
ATGTACTATATATATATATAAGTAACATAAACACGAGCCGGATAAATAAGTTATAACCTT
TGGTCGGCTAGTTGGTCTTCACGAGACGGTACAAGTTATAACCTTTGATCGGCCAGTTGG
TCTTCACGAGACGGTACGTCAGCTGGTGAAGACATATCGATGACAAAGGCGACCCAGACG
TAGATGAAGTAGACGAACGGAGGCGAGCAGTCGCGTAGTCGCTTCCAAAAAAACCTAATC
GCCCCTCTTTCATAGGATCCGGAGAGGCGGGTTTTCGAAGGCCTGCTCTCCCGTCGACCG
TGTACGCTGTGAACAGGACAGAGTCGTCTGCGGCATTAGCAGCAAAAGAAACGAGCGCGT
GGAGGCAGATGTGATTTGATCTCGTGACGGCTAGGGTTGGCAGGAGCCTTGCTTATCTAG
GCGCGGCCGGGTGGAGAGACGTGAGCTGGACCCACGCCCGAGTCGGTAGCAGCCCACGAT
CCGACGTCTCATATCGTGGCACGTCCGTTACGTATTCTCCGTTCCTGACCGGCAAAAATA
AACGCATAGGTATGAGCTCGGTTCATTCACGCAACCTGCAGCGTGGCGGGCGGCTGAGAA
GTGCGCGAGGGCCTCTTCTCTTCTCATGTTCCAATAGCATGTACTCCCTTCGCCCCGAAA
TAAGTGTCGCAAATTTATAACTAAACTAGTACAAATTTTATACTAAGTGAGCGACACTTA
TTTTGGGACGGAGGGAGTAGAAGAAAGACCCTTATAAAGGGGTTCAAGTCCTTCTCCAGT
GGAATGGGACTAAACCTTTTACCTCCTCTTGTCATGCCACCACTTATATGGGTCCTTAGA
GATTTTCTGAAATTGTCTCATGTGTTCTAAGCCCATCTCAGATTTCAACATATCCTCTTA
ATTTTTGTAGGGTTAGATATACCAAGAGATTTTAGTGATGAAAATTTTCCATCAAAACAT
ACTTTAATGATTTAAATGCTCTTATATTTCTTTATAGAGGAAGTATAAATTATTGATTGG
TTTGAGTGATGAAAATTTTGTACAAACCCTCTTCGTGGTGAAAATTTCCTCCTCCAAGCT
CTCCGGAACTCTAGGAGGTTGTCCCACTCCCACCCCACCGAAATGTGGTCCGGGCTTTCC
TATTGTGCACCTCGGCTGCTAGTCGTGACATCGTCGTTGCTTACGGGACGGTCCTCGCTC
GCCATAGGTGGGCGTCTCAACTGGGCCGGCCCAGTTTTCTTTTATTCCCAAAAAATCTGA
TTGTTACCTTTTAATATATTTTTATGTTTTTTCCTTTTCTGCATATTTATTTTCTTTTTT
CTTTTTAGTTTTTCTTTTCTTTTCAAATTTGAAGGAAACTTTTTTTGAATATGAAGAATA
ATTTTAAATATCCAAAATATTTTTTGTATTTATGAACAAAGTTTAAAAAACAACATTTTT
TTGAAATTTGGTACATTTTATTATCAAAAACATTTTTTGACATTTAGGAACAATTTTCGA
ACACGAAATTAATTTAAGAACTAAACAAAATTTCGATATTTCGAACATTTCTTTGAAATA
ACGGATATTTTTTGAAAATACGAACATATTCTTAAAATGACGAACATTTTTCTAAAAAGT
AGAACATTTTTTTAAAATCTCCAACATTTTTTCAAGTTATGAATGTTTCGGAAGATCATC
AACTATTTGACATTTAGAACTTTAGAAAAAACATTTTTCTAATATGAAGAACAATTTTGA
AAATTAGAACATTTTCCGAATTTATGAACAATGTTAAAAAAATATTTTGGATTTTCAATA
AACCTTCCATATTTTCAAAAAATGGTCTTCAAATTCGAAAAATGTTTTTCCTTTTAAAAA
AGTATTCTGGATTTTAATAAAATGTTCTTGTTTTCAGAAAGTGTTCGGGATTTTGAGAAA
ATGTTCTGGATCTTTAAAATATTTGAAAGCGCAAACAGATTTTTAAAGCACGAATAGTTT
TTGAATCTTGACAATAAATTTTGAAAACGAGAACAATTTTAAAAAATCATGAACAAATTT
GTAACCGCGATCAATTTTTTAAAGCAAGGACATTTTTTAAATATTAAGAACAAAAGTTTG
AAATGGAGAATAATTTTGAAAAAAACCCGAATAAAATTGGAAACGCCAACACTTTTTTGA
AGCACGAACATTTTTTGAATTTTGAGAATAAATTTTGAAACCGAGAACAAATTTATAAAA
TCCTGGACAAATTTGGAAGCGCGAACAATTTTTTAAAGCATGGACATTTCTTGAATCTTG
AGAATAAATTTTTAAAAGGAGATTTTTTTTAAATAAATCCCAAACAAATTTGGAAGCTCG
AATTTTTTTGAACAACTTTTGAAATAGTGAACAAAATTGAAAGCATGAAAAAAAGTTATA
GCATGAACATTATTTTAAATCTTGAGAACAAATTTTGAAACCGAGAACAATTTTGAAAAA
TCATGAACAAATTTGGAAGTGCGATTTTTTTAAACCACAAACCTAAATCTTGAGGAAACA
TTTTTGAAACGGAGAACAATTTTGAAGAAACCGGAACGAATTTGGAAGCATGAACAATTA
TTTAAAGCATGAACATTTTTAATCTTGAGAACAAATTTTGAAACCAAGAACAATTTTCAA
AAATTCCGAACAAATACGGTAGCACAAATAATTGTTGAAAGCACGAACATTTTTTGAATC
TTAAGAATAAAATTTTGAAATGGAGAACAATTTTGAAAAATCCCAAACAAATTTAGAAGC
ACGATCATTTTTGAACATTTTTTAAAACAAAGAACAAATTTGAAAGCATGAATATTTTTT
AATCTTAAGATTTTTTTCTGAAACCGAGAACAATTTTGAAAAATTGTGAACAAATTTGAA
AGCATAATCAATTTTTAAATCGAGAAATTTTTGAAAATACCAGATATTTTTTTGAAAAAA
CCAAACATTTTTTTTGAAAATACCGAACATTTTCTAAAAAGCAGGAACATTTTTTAAAGT
AATAAATATTTGTTTAGAAAAGGCAACTACTCCCTCCGTTCCTAANNNNAAGTCTTTTAA
ACGATTTCACTAAGAGACTACATACGTATGTATGTAGACATGCTTTAGAAAGTAGATTCA
TCCATTTTACTTCGTATGTAGTCCCCTAGTCAAATCTCTAAAAAGATTTATATTTAGGAA
CGGAGGAGGTATGTGAAATTGAGATTAGTCTTTTTAAAAAGCAAACAAAATTCGAATTTT
AAGAACAATGGTCGAACGTGATCTTAGTTGAAAAAAGGATAAAATAACTTTGTAAAAAAG
AAATAAAGAAACAAAAAAAAGAATATATGAAAGGTAAAAGGAAAAAGAGAAAATAACAGA
AACAGAAACATAAAAACGAAAAAGAAGAAAAAAAAGAAAAAAAACAGTTCAGAAAACCTT
CTAGAAGGTTCTCAAAACCTGTGGCTAAGCCAACTGGGCTGGTCCAAATATGGTCAGGGG
TTGGTGTGCGGAGCCACCGCTATTTGCCGCAAAATACGGCGAATAGCATTTTCCCTCTTG
ACGGTTAAAAGAGAATGGAATGGGCAATGCACCGGCTGCCTGGGTTATTTGCCTAGATAT
TTGTTCATTGATGAGTTGTTTGTCGACGTGTCTGGTTTAAGAACATCACTGTAACATTTT
CTCTTTTCAGTTCACTAATGGAATTTTTTTACGTTTCACATGTTAAGATTTTTGAGCGTC
AATTTATTTCATTTTGTTACGACTAATTTTGATTTTGAGGAATTAACTGATTTTTAAATA
TTTTCATCCAAGATTCTGAATTTTATCTCTTAATGATTTTTATTTCAGCTATTGAAGTTT
ACGAGCAGTAACCTTTTATTAGTGGGTGAATTATATTTAATAAGCTTCTAAAGTTCTCAA
CGCCCCAATGTTGTATCTATATCTTCTTTTTTCTTGAAGTTTGAAATAATAATAGTTATA
TGTAAGGTGTCACATAAAGCAAACTAGAACAACTTCAGATAGAGGAGGCTGGTGGGGAAC
GTTGCATGAAAAACAACAAATTTCTTACGCACAGGAAGACCTATCATGATGATGATCATC
TACGAGAGTGAGATCTGATCCACATATCATTGTAGATCGCTA