Map Locations of contig_62823 (6429 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_62823

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_73037 2 1912 bp AK353929 Available Available None
MLOC_73038 1 519 bp AK353929 Not available Available None





CDS Structure of MLOC_73037






CDS Structure of MLOC_73038






Contig Sequence (6429 bp)

>contig_62823 6429 assembly3_WGSMorex_rbca.fasta
CAAAAAGATTACAATGTTCAAAACTATAAATCAAACATTTTGTCACTTTTGCGCACAATA
TATCTGAGACTCTTTGTGTAAACTAATCTAATATCTTTTAAATCACTATATAGTCAAACA
ATTAGTGATTTAAATGATCTTATATTAGTTTACATAACTTAGGTTTAAATTACGCGTATG
CAGACGTATATGACGCCGGGTTTGGTAATCATGGTTGTAGATGCTCTCAGTTATCATTTG
GGTCAAATCATATGTACATGTTAAGGTGAGTGCTTACATTTAGGTTTCAGGTACTTCTGT
ATTTAGAAAAGACAGAAAATCCTCAACTGTACATCATGTTTTAACTTGCTCACCCGTAGA
AAATCATGCAAGCCATATGATAAAATTTCTCATGTTTACAAAAAGATTACAATGTTCAAA
ACTACAAATCAAACATTTTGTCACTTTTGCGCAGAGTATATCTGAGACTCCCTATGTAAA
CTATATAGTCAAACAGTTAGTGATCTAAATGATCTTATACTATAAGTTTACATAACTTTG
TATTTTTGCATAAATTTTGATATATTTTATAAAATGATGTACTTTGTAAGATGCACAAGT
ACCTGAAACCTTAATCTCAAGCACGCACCTTTGTATTGCAAAATCAACTTGTCTTCACAA
AGCTTTCCTTCACCTTCCCTGTACACACCTTGCTTTAATTTTTGGCCTCCAATTATAACC
TTTCGGAGTTTTCCACCTAGACTTATTAACCTAATGACAGATATTCCTCCGTAGATTTTG
TTGGTGGAGTTGGTCTAATCAAGGTAGAAATTTGCATACCATACTTTTGACTTCAAAGTT
TGAGATAACATAACCAAATCCCCATTAACTATTCTTTGTTCCGCACGCGTTTACTCTAAA
CGCCGAGCTTTAAGCACACCTCTGCCCTTGATAATCATGCACAAAAAAGCTTGCAAACCC
AACTTTATGTTCACATAACCACATGGTTTAAGAAAGGCCAAAAGTGTGGGTGGCAACTAA
TAATTCAAGAGAAACTAGACTATATTGAGACCCAGAAAAGCTTATCATTGGGCTCATAGC
AGCCACCACCTCCACTAGCGCTGCGAGCAGTTGAGTACTGTCTGCTGGAAATAGAATCTG
GAAAGGTGGGATGAACCTGATCTATCCGTGGCCATTTCTTAATCCAAGACTCCTACTTAG
ACACATAATTAGGGGCCGTACTCGAGACTAAGTCGCTAGCTAGCAAAAGGACAATTGGTG
ATGTATTGACGCCCACGCTGCTTTGCCGATCATATCACGAGCGTAATTTGCAAAGGATTG
GAATATCTAACGACCTTCAGATTTCTAGACATGACAAATCGAACGTTTTTAAGGCATATT
ATGTTGGCCGAGGATGGCAAGTTTAGCTTGGCCACCATGGCAAATCCGTCCCAGTTTCAT
TTTTTGCCGGGAAATTGATGTGCTTGCAAGCTAAATTTGTTACCATTGCTCTGACATAAA
TTGCGATGAGAAACATTCGATCCGCCATGCTAACAAAAGCAAACGTCCGATTTTTAGCAT
TTCCGTTTGGAAAAAGATTCCGAAACAAGAAAATCGCGCACACATCCGTAGCAGAAACTT
GGTGGATGCAATGAACCACGAGGAGAAGGAAAAAAACATGGTACAAAAGAACACATGCGC
AAAGAACAATTCCAAATTCCAACAGTTGCTGGCGGCAGTAGGGCTAGCTTTAGCTTGGCT
GCACCTGATTGGGCCGCGGCTTGTCGTTTTGTTTCGGCTGCAGAGTTTGATTGACACTTA
CTAGAATATTCCGAAATTTCAGTATAACTCTGAAGTCTATGAACCAAGTGACTATTTCAG
GCTTTGCAACTTCGACCGCTTCAGTAATTTGTTGCTACTTTACCATTGGACTTCATCAAT
CCATTGAAAAAACTGGCAAAGCATAGGGGGGTTGCCGATCAAATTTGTGATCCTAAAACT
AAACAATACTATCCTATCAAATTGCTGCACGAGTCCATTATACAAGGCGTGTTCAATGGT
TCAGATAGGAGGAGGTGGTACGTCATTGTTGATGCCTACAGTCTACAGACACCAGCAAGC
ATGTTATCAGATGGTTTTTTTTTGCACACAAATTTCTGGGTCCAAGGTTCTTTATACGTT
CAGAATGTTCTGGAGGCTTGCAAGAATATAATGCCTTCTGAAACCCTGAACCAGCTGCTA
GTAATTCTATTTCCTATGCTACTCCTTAGTTGGCAGCAGCAAAAAAGTGCCCACAAGCCC
ATTTGGGAAAATCAGCATTGTTTGCTAGTACAATAAGTTAGAAACAAAAGTACGTCGTTT
ATATGATTTGTGTAAAGCACAGACTGTCGTGATGGCCATGAAACGAAACTGTCGGTGACG
GCGAGCAGAGCATTGTTCCAGCCATATCGGACAGCTGAAAAGATAAAAGATAAGGTCGAG
CGTATAATTCAGATAACTGTATCATATGGCTCGACCCTATCTTCCGAGTGGTTGAATTGA
ATACTGATCAATCTGAATTGAATTGGATTGAATTGAGTTGAATACTGTTCGCACAGCCTG
AGCATAATTGGCACAGGTTGGAATATAAAACTGGCACTACCACTGCTATCATATGCTAGT
ATAATCGGGGTGTGAATCTGCATAGCACATGTTGTTCGTTTACTTCCTCCGGATCAAAAC
AGAGGCGATACAGGATCCATGACAAGACGGCCAGATCTGTCCGTGTCATTATTTAACCTC
TCTCGGATGGAGAAAAGGGACTTTTCCTCCGGTTTTTCCAGGCCCCAACACATGTTTTTT
CCTTCAGGTTTGTTTTTCATGGCCTGCTCGCCTTTGCGACAAGCCGAGCGTGCAGCACCG
GGAAAGAACAGATAGCAAGACAAAAGCCCCGTACGTGCTGCACTGGTTTAACCCTCACAT
TTCTCCAGAAGATCGATCACATGATGTGATTCGGCAGCTGAGCACACGCGGCGAGTGAGT
AATCGATTAGTTCTGATTAACCAAATGAGAAAAGCGGACAGACAGACTCCATTTCAGATA
AACTCCATGATAGTACAGAGAATGCATCGGTTCCGATCACTGAACACTGATCTCTCATCA
TCATCCTTCTATACAACAAGGTAAATGACTAACCAAAATGGATCGAAGAAAGCTACCCGG
CGCATGATCAGCGTTCTTGCTGGCTGGCTACTGGTTTCCTCCACGGGGCGGGCCGGAAAC
TCTTTCCTGTTAGCAATCCCTCCGATGCAGCGAAGATGGCGCACGCAGATGTAGAGAGAG
AGAGAAAAAGAACGATCAAATCATCTCATCAGGAGCCTAAATCTGTGGCAAGTCTAGCGC
GCCGTCATGGTTGTTGTTGTCGTCGCTGCCGCTGCCGCTGCCGCCGCCGCCCTCCATGAA
CAGTCTGAGCCAGTAGTCCATGTCGCCGTCGGGCTTGCCAAACGCGTCGTGGGGCTCCAT
GCAGACGTCGTTGAGGTCGTCCAGCGGCATGGACAGCGTCTCCGACCAGAAGCTCTCGTC
GATCTGGAACTCCTCCGACTCCTCGGACGAGGTGAAGCACTCCTCCTTGACGGACGCGGA
CGCGGACGCGGAGCTGCTCCCCGAGTTGCCGTGCTGCTCCGCCGCCGCCGAGGCGGTCGA
CGTCGACTCGGTGACCGTGGATGAGACGGAGCGCTCGGGCGAGGACACGGGCGCCGCCGC
CGCCGCCCTGGCGGTCAGCGCGTTGAGGTTCCTCATCTTGACCTTGCCGTCGCGCTTCCT
CGGCGCCGCCGCCGCCGCCGGCTTCTTGCGCTTCTTGGCGACGCCGGCCTCCTCGTGCTG
CTCCTGCGCGCTGGGGTCGAGCCGCTTCTTGAGGTGGGTGTGCCACACGTTCTTGATCTC
GTTGTCCGTCCTCCCCGGCAGCCTGGCGGCAATCGCGGACCATCTGCGCGCAAGCAAACA
ACAACACGGATCGAATCCAATCAGCGCGTAGTTCTTGACAGATTGACAAGATGAATTCGG
CGACGTTTAATAAATCCGATCGCGACGTGATCTGAAACCGCAGCGCCGCCCCTAGTTTAA
TGCCGGCACTGAAATCAAGAAGGCGCCCGTGGCCGGAGCGGCCAAACAAGACGGAATCTT
TCAAGATCTCGCGCATCACCGGTGATGCAATTAGCCATAATACTATAACAAAGGTGGCCT
ACACTACTATACGATGCACTTGAGATTTTTATCTTTGTAGTATAATATATATATATATGT
GTGTGCGCGCGCGCGCGCGGAGGTGGGACCCGTGATGATAACATATTGTAATTCGGCCCC
GAAAAGAAAAGGGGAATAAACCTGTCTGTTTTGCAATTGAAGCAAAGCAACAATGATTGC
CACCATTTTTGCGGAACAGTGAAGATGTGATGGAGGAGGAAGACGACAAGGGGTAAAGGG
TGGGGAGGGGGGGAGGGGCACCTGTTGCCGAGCAGCTGGTGCAGCTGGATGATTGACTGC
TCCTCCTCGTCGGAGAAGTTGCCGCGCTTGATGTCCGGCCGCAGGTAGTTGATCCACCGG
AGCCGGCAGCTCTTGCCGCACCGCAGAAGCCCTGAAACCAGCACAGATCTTTAGCGCCGC
CGCGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAGGACGCCTGAGATGCGTTTG
ATATATGGACGGACGGCGGGACTCACCGGCTTGCTTGGGCAGCGCGCGCCAGTTGCCGTG
GCCGTGGCTGTGGATGTGTGCGACCAGGATCTTGTCCTCCTCCGGCGTCCAGGGCCCCCT
CTTCAGGCCCATCTTCTCGCAGCACGGCGCCCTCCCCATCTTCTCGATCCGGATGCGTGC
GCGCGTGCGTGCTGGATGCGCGAGTCCCCTCTGTGCCTGTCTTTGACTCTTTGGGGGAGA
AGAGAAGAAGGGAGCACGGGCACGGCTAGCCTGGCCGGGGTGCCTGTGGATGCCGCGGAG
TAATGGCGGAGTCGCGGGGGGTGTCCGGGTATTTAATGCCCGGCTGTGGGGGCGCCCTGC
TCTGCTCTGCTGAAACGTTTTTCAGAGGCCCAATTCTGGTTTCTCGTGTTGTGCCATGGC
AACTTCGCCGAAGGAACCCACCAAAGGTGGCCGTGGCTAAACTAAACTAGACCAGCATGA
GGCGCAATTGTTCCTCCACTCTCCCGTTTACTGTGATTTTTTAGACTACTTTTACTCTCT
ATACTTTTCTTCCGTTTCATTCGCTTTGGAGGGGGTGGTGTCTACTCCTGATACTAAGAA
AGTTGTGATGGTGGAAATCTGGGAGGATGCGCCGGAAGATTTTCAGGAAAAGATTTACTT
GCTCCATGAATGGTCAATGCTCAGGGTATGCTACATCGGTGAATCAACGTCATGATGCAG
ATACGGCCGTATTTAGGAGTGGCGGATTTTGACCGATAGTAAATGCGTTGCGTATCAATC
CTCAACCTCGACGTGGATTATCATGTTATTTGTGAATACTATACTGCTATCCGATGGTGA
CTTCACGAATCGGGAGGCGCGATCGTAACGGAGATGAACTCTCTCGCGTTGACTGTTGTT
GTGTAGTATACTTGTGAGTGTGTGTGTGTCGACCACTCTACCGGCTTGCTAGCTGCGGTA
CTTGTACGCATCTTGCGCAAGTGTGACATTTCACCCCCAAAATTTACACGTGGTTGTGTT
TTATTGCCAATGAAATACGCATGGTTCTTTTATGGCAATGACGTGTCGAATATGATTTGT
GGTAATTTTAGTAAATCATCTTTTTCATTCATTGGGAATATTAATGTCTGGGATTCATAA
AGATGGGACAATTACTAGATTACGAGTCTGAAAACCATAGAAATGAAATAGTACAATGAA
AAAAAAAAACACATTGCTAAGTGGGTACAAATGTTTTTTTCTTCTAACATGTTGAGAGTA
AACATTGGGAGCAAAAGGTTCAAGTTAGAACTTATAATTACACATGAGGTTAGATTGAAG
CAAATGGTTCAATTGTTTGTAGAGCATAAGTTGTAGATAGATAGAAGAATTTGCATCATT
TTGTTTCGTGTCTTCACCATTATTATTATGGGTTTTTTATTTCACCATTTTTTTTGCTAG
AAACCCTCATAACTGGACACAACGGACGTTGCCGTCGGGTCAAAGGCTTGACCGTTAACT
CTGACTAATGAGGCCACGCTGGACTGTGTCGTCCGTTCGACCTGACAAGTGGGGCCGCGT
TGGGTGGTGTCGGTGTTCAACCGTTGGGTCGTCCCTTGCATTAAACGTATGCGCGCGCCG
CGAGGACAGAAGCCAGCTATGCATGCACCCAGCAAACCTTGCGTGCATTCGTCGATCGAG
CCTGCATGCGCCGATGCCACGATCCCACGACGCGCCGACCGAACCTGCATGCGCCGATGC
GTCCGCCAC