Contig Data
morexGenes
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Map Locations of contig_6263 (4912 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_6263

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72928 2 1847 bp MLOC_72928.1 Available Available LOC_Os06g51029.1, FRAME:-1, EVALUE:0.0, 13106.m05493 protein OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed





CDS Structure of MLOC_72928






Contig Sequence (4912 bp)

>contig_6263 4912 assembly3_WGSMorex_rbca.fasta
TCATAATGTATAAGAAAAATGTTAAATGTGTGCAGGGGAAAAAACATGTGTTCAGCAAAT
AAGCTGATAAAAACGACAAAAGACACAGGAAAATGAAGAAAACCAAAAAATTGAAGACTG
ATAAAAAAAACCAATGCAAAAGAACAAAACAAAGAAAGTAAACAAATAAATGAAGAAATA
GAGACAAAACAAAAAACACTGAAAACTAAGAAAGAACCAAACCATTATAACAAAGAAAAA
ACTGAAAAAACTACAAATTAACGAAGAAATTTGGTGAAAACAAAGAAACCCCGAAAAAAG
AACAGTGAAGAAAGAAAAGAAAACAGAAAGAGAAAAAATGAACACAAAAAAACAGAACGT
ATGAAGATCGAGCGAGTGATCAGAAGAGCTAAACTAATTTTATACCATAAGCCACTAAAA
AAACTTGGCCTAATTAGGAGGGGCACTCTTTTCCGATATGAATTCAATTGTATGAGTCTG
GTGACACAAGTTTTAAATTGATGGTCAAACACGAACCTGAAAATGCATGGACGCTACATA
AACTGGAATGATGGGAGTAGCCTGCATTGCAATGCACTGTGATATTTGAATCCAAAATAA
GCAAACTGAAATTCAAATGCATACTTAAGACTTAGCAAACAGGACATGCAAACAAGGAAG
CAAAAACAATTATTTTTTTCTGAATTTAATCAGAACATGCAAACAGGCGAAAACTAGCAA
CAATTTGTATTAATCGACGCACTCAGTGTCAGTACATTTTTACAAGGAACTATACAAACA
TGTTTGCGGCAAAAACAACATTTTTACTAGATCAATGTGGTTCCTACAAGCTGGACCCTC
GTCGATGAAGAGGCTCATGAACATACAGGGCATGACGGGGCGACTTATGCGACAAACAGC
TCCGCCTGCCCGTCGATGAAGAGGCTCATGAACTCCTCCCCGTCCACGGTCTCCTTCTCG
ATCAGGAGGTTGGCGAGCCTGTGGAGGATGTCGATGTGGGTGTTGATGATCTGCGTCGCC
CGCGAGTAGGCCGTCTCCACGAGTTCCCTGACCTCGGCATCTACGATGTCCGCCGTGGCC
ATCGAGTAGTCCTTCTGGCTCGACATCTGCGACCAAAATACAATGCAGAAATGTCCGGTT
AGTACCCACGATAGTTGCTCGTTGTTAGTGACAGAGATTTCTGAGAAGTAAAGCTAATCA
GACATTCAGAGGTCTACTCACAGCTACACCAAATGAGATACTAGCGTAATTGGACTATTT
TCAAGTATGAATAGACCTTCGATTAACCCAAACATGGATGATGACTAGATTGGAAGTATA
TATAGGAGTGACGTGTTGCAGGAATGCAGTAAGCTGGAAGCAAGAGTGTAGTGTAATAGT
CATCTGAGGTAAACTGACACTTAGATAATGATCACCAATTGATAATGACCTTCGACAGAG
GCTGGTAGAGACTTCATCAATCAGGATACTAAGCAAAAAAGGACAAGAAATGCTGGGAAG
ATCCAATTTGTAGTTGAAGTTTGCACGTCTAGTTCCTTGGTTAATTTTGACAAATTATGC
TTTTAGAATAACATTATTTTGTTTCTCTTGCAACAATCTACTCCCGTCTTACTGGCATAC
CTGCTGGCCCAAGAAAGGGTTTCCACCAGATGACCCAATCGCAACTTGCCCGATCTTCTT
GCTGAACCCAAATCTTTCAACCATTTGTCTGGCGACACGTGAGACCTGCATGAAGTCGCT
GGATGCCCCAGTTGTCACGTTGTCTTGGCCAAAGATCACCTCCTCGGCAACCCTGCAAAA
GTGGTTATCCGTGTTAGCACACAAGACATCTCTGTGAAAAATTGCAGTAACTAGTGGATG
CATAAATAAATACAATTTCCACAAAAAACGCACCTGCCACCAAGTGCCACAGCCATTTGG
TTCTCTAGGTAGCTCCTGCTGTACAGTCCAGACTCGAGCCTCTCTTCGCTTGGAGCAAAG
AACGTGAGACCACCAGCCTGACCTCGAGGAATGATNNNGATCTTGGCAACAGGGTCATAT
TCAGGCATCAGGGAACCGACGAGGGCATGTCCAGCCTCTGCAAATCCAAAAGTTTACATA
CAAATATTAGGAATCTGTTCACTCCAGGATCATTTCAACAACTGATGGTGACAAAATTAC
CATGGTAAGCCACAAGCTTCCTCTTCTGTTCTGAAACAACTGCATTCTTCTTCTCAGGCC
CAGCAATGATCCTCTCCAGAGCATCAGAGATCTCGTCCTTGCTTATCTCCTTCAGATCAC
GACGAGCGGCAAGGATGGCAGCCTCATTCATCAAGTTCTGAAGATCAGCACCGGTGAAAC
CAGGTGTCCTTCTGGCAACCTTATCAAAGTCCACATCCTTCGCCAATGCCTTTCCTCTGG
AGTGAACCTATTAGATGAAAAATGATTTGTAAGCTGCAGCGCAGAACCAATATGATCAAT
AAAACTCATCAAGCAGGGGAAGCGAAAGAAAACTCAGCACACCTTGTGCCTAGAAGGTTA
GCAGAACTTAATACATTAAAATTCCTACTGTTATGAACCAGCCAGGGTTGATAAATGATT
AAATATGAAGTCGTAGACACAGACACACGGTAGAAAGGTGAGCTGTGTTACAGAAGTAAT
ATATTAAAAAATGTGATAGATACAAAACAATTTAAAGGAGGCTTAGGTGGTCTTGACCAC
ATATGGCAATAAGTGAAAGTTTTCTCCACCTTGATGTTATTATACTGTACAGCAATATTA
ACATCTTGAAGTGTATTTTTTACATGCTCTTAAACTTCCAAAATTATGCACGTTGTGTTG
TTAACATGCTACCTATCATACCCATTCTGAACTGGATTGTTGGCAATTGATTTTGGCTGA
TAATACTAAAGATTTTTTGCCACTAGTGTAGTGCCAAAAACGCTCTTATATTACGGGACG
GAGGGAGTAATAACTTTCATGGAAATGGTAAATACACAACCGAAAGCACAGATAATACTA
GTGTCAATTTTGTGATTTACAGAACTATGAAGAAACAACTTGAAGAAAAAAGAAAATATA
TCTTATAGAATATTATTTAGCTAGGAAGATCAAGTTAGGTTGCATTCATATTCCGCCTGG
AACAGATTATGAAGAAATTTTGCATATCAATTCATAGTCTTTAAATGATGACCCACTGAG
TTCATTTTCGGATCATATTCAGTAAAGTCTCTGAGATCAAAACTTGTTTAGCTCAAGTTA
AACTAAGAAAGTAAGAAACAAGTGCATAACTAAAGCCTAGAAATGCTGACCAAACTAGTT
ATGTAAAGATCTATAGTTTTGGACAAATTATGTAAGTAGCAAGAAACTGAAAATGATCTC
TAGGGTAAACTAAGAAAGGGATTAGCAACTGCAAATCGAAAAAGCACAAAAAAGGGACAA
ACTTAGTTGTCTAAGCAAAATAATCAGTGGTCATTAGGAATGTAAGGTCAAAGATATTTA
GTTGTTTTTGCATCAATGCAAGAAAGTGCCTTATCAAGAGGCCGGATTTGCAGTCAGTGC
AGTTGTATCACCTAGTAGATGCGATGATTGAATGAAATTCCCACTATAATTATTTTTCAG
AAAAGGGCTGATAGACTAGTAAACTACAAAGCTCCAACTGTACTAAGGATATAGTGGCAA
ATGATTTAGCAGGCTACCCTTCGGCTGGCTTTATCAAAGCAAGTTGCACTACACTTGTGA
TTATCTACACCACTTCACCATACAGATTGAGTTATATACCCAAGCATTTCTGAAAATTTT
ACTATTTGGGATGAAACATGTCAGGTAAATTGTCCAAGGTTTATACTTGAAACAAAGTTC
ATCATGTTGCAAGAATGTAAGTATTCCTTGCGCAGTCAGCAACTAGCTGCAGCAATTAAG
TCTTCAGAGAATAGCAGCAACTAAGTTTGTGGGTTGGGTTTTCAGAATTCAGAACAATAT
GAACTAAGCAAAGCAAAGCAATCATAATTCTTCACAAGTAAGTATGATAAGCACCAGGGA
TTGCTCACCTCAAGGATCCTGACACGGCCGGCTACATCCGGACGGTCGACGGTGACCTGC
CGATCGAACCGCCCTGGCCGGAGAAGCGCGGAGTCAAGCACATCCGGCCTGTTGGTCGCG
GCGAGCACGATGACACCGCTGTTTCCGGAGAAGCCGTCCATCTCCGTGAGCAGCTGGTTA
ATGGTCTGCTCCCTCTCATCGTTCCCCCCACCCATTCCCGCACCACGCTGCCTCCCGACG
GCGTCAATCTCGTCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGG
TCCCTCACCCTGGAGGCACCCACGCCGACGAAGAGCTCGACGAACTCAGACGCGGCGCAG
GAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCGAGGAGCGTCTTCCCGGTC
CCGGGCGGGCCGACGAGCAGGCATCCCTTGGGGATCTTGGCCCCGAGCGCGGTGTACTTG
TCGGGGTTCTTGAGGAAATCGACGACCTCCTGCAGCTCGAGCTTGGCCTGGTCGGCGCCG
GCGACGTCCTGGAAGGTGACCCCGGTCTCGGGCACCTCCTGGAACTTGCTCTTGGAGCGG
CCGAAGTCCATGGGGCCGCCCATCCCGCCGGGGCCGCCGCCGGGGCCGCCCTGGGCGCGG
CGGAAGAGGAAGAAGAGCCCCGCGAAGGCGATGAAGGGGAAGAGCAGGTTGCCGACGAAG
GCGAGGAAGCCGCCGGGCCCCGCGGCGTCGCCCTCGGCGACGGAGATGTCGACGCCGTTG
GTGGCGAGGATGTCGATGAGGTCGGGGTCGTTGGGCACGACGACGGAGGCGCGGCGGCCG
GCGCCGGCCCGGGGCGGCAGCATGGCGGCGCTCTCGCGCAATGGCACACGCG