Contig Data
morexGenes
Links



Map Locations of contig_62557 (7522 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_62557

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72887 1 402 bp MLOC_72887.1 Available Available None
MLOC_72888 8 1151 bp AK251772.1 Available Available None
MLOC_72886 1 695 bp None Available Available None
MLOC_72889 1 983 bp MLOC_72889.1 Available Available None
MLOC_72885 1 509 bp None Available Available LOC_Os04g33010.1, FRAME:+1, EVALUE:8e-25, 13104.m03181 protein transposon protein, putative, unclassified





CDS Structure of MLOC_72887






CDS Structure of MLOC_72888






CDS Structure of MLOC_72886






CDS Structure of MLOC_72889






CDS Structure of MLOC_72885






Contig Sequence (7522 bp)

>contig_62557 7522 assembly3_WGSMorex_rbca.fasta
AGTTCGTTTTCTTCATTCCGCACTGTTGAATCAGATGAAGACCAACAAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGCCAAGAAG
TGAAAGTCTTCACCCTGAGTGTCGAAGGAAAGGTAGAGAGTCAAGGCGTCACCCTAAGAG
GAGAGCAATACCCTCGGGCAACATTGTCGCGGTGCAAATGCGTAGAGCTTTCACTCAATC
TTCCCTACCTCTCATGTCGTGGGATAGGACACCACAACAGGGACCCACCAAGCACACCAA
ATCATTTCAATCCGGCTTAGGGTGAGGCTGCCAACCGCCGGTGACAACTTCGACAGGACC
ACTCGCCACATTACATCTCGCCACCCCAATGGCCGAATCACATCGCTAACACCTATTGCC
ACGTTGCCCGCCGATGAGTCGCCCGTGCAGCCTCACCATGTAGGGACGCCACCCGACATC
CAAGACTGATCCACCACCGTTGCCATGACAAAACAGGTCATGAAACCACAGTTGCCATGA
CAAAACAGGTCATGAAACCACATATATAGACAGAGACCACACACAGGTGTAGCTGTCGTG
ACGTAGCAACACATGGCCTCGACCAACCAACACCAATGTTGATCCATGTGCAGAGTAACA
CAAACATAAGTGACGGTTCCAGCTAGATCCAATGCCTAATTCGTCTAAGGGAGCAGATCA
TCAAGGTCAACTAGCACCATCGCTAGGGCGGCCCTCAATGGGCCACCAACATCGTTGGCG
ACCTTCATGAGTCGGATCTGGTCCAACCCTCAAGGCTCGTCGCCACCCCAACCCTAGATC
TACCCCCGTCAATCGTCGGCCACACGCACGTCACCATTGCCAACCGCCTGCTTCAGTTAG
ACTAAAGCCCCTGCCCCACGCCGGTGGGGAGTCATCTTGGGCCACCACACCAAAATTGTT
GGAGTTGTCGTCTCGCACACATGCATACCAACTATTGCCATCCTACCACCTCGTTGGGGG
GGCGCCACAACCAACACCAAATCAATATCAAAGACAATGGTGTCACATTTACAAATGTTC
AAAAAAAGATCAACACATCCATAAAACATTAGTCTATGTTGTCACAAAATTTCAAATCAA
AATTTAAAACATTGCTCGAGGTACGAAATAACAAATTTTACACTGAATAAAACATAACAT
AAGTTGGGCTTTAGATTTTAACCATTACCACATGATGTCAAGATTTTCATTTTTACATCT
CACGCAACGTTTTGAAATTTTATATGAAATTTTGTGACAACACATATCTGTGTTGTGTCA
GTGTGCTAGATTTTTTTTCTCAGATTTTATGAAACATTTTAAAAATGTAATATGACTGTG
GTGCACCTGTAGCACCAGTGCACCAGATACATTACCAGCGGTAGAAACTAGCACCAAGCA
ACATTACCAGCGGTAGAAACTAGCACCAAGCAGCTGGTGTCCGAGGATTGGCATAAAAGA
CACCTCAGAAAGTTGGCAATGGCATTACAACTCACACCATTAGCTTTATGCAACACGACT
GTAAATTCCAGTATTTGGTGCGAGGAAATTATTTCATAATTATCTGGTTCGCCAAAGATC
TGTTCTCAAAGCAGTCACTGCAGGACCAGGAAACACCGAAAGAAATTCCAGAGTGGGAGC
CAGCTAGCCCAAACTAGGCATCACGACCTCCTACATGATCCATGCCACAATGGTTGCAAA
ACAGTTCAATTTCCTTGCGCTTCCACTGGTCATCTACTGAATCCGAATGAATGTGTAGTG
ACCCTATATCCGGGACTTCTTCAATACCTTCAGCAGGCTGAGAAGGAGAGGAACCCTATT
ATAATTTCATCAATCTCCAGAAAATGAGGACGGCCTGGGTAAAAAAAAATACCTGCAGGA
ATTCTAGAAGGCACCACGCAAGGTAATTTATGATCATAACGAGGCAAAACAGCTTGCCTG
CCCAAGCTCCACATGTGAGGTATCTACAGCATTACGGAAACACAACGCCAGTGACTTCCT
TTTGTGTTTGCATGCAAAACCATGGTGGTATTGCCCACACTTTGAAAAGTAGAATTAAAA
TCATTATATAGAATATAGAAAATATATACAGAGTTAGCCCTTTGACAGACAATATATGTA
AGGACAGGTGGCAATCCAAAGGAAAAATCTGCTATCTTCAGTTACAACTACTCTGCAATG
AGTGACAAAAGATGAATTTACAGTCCGTGTTCTGCCGATACTCACCGGGGAAGATGATCT
AGCAAATTAGTGTTTGATGACTGCATTGCACGATCGTAGACGATCTCCGTTCTTTTCGCA
ACATCATCCCAACTATAGAGTTTTTTCATCTACAATGCACATTAAATTTGAATAAGCCCA
AGACAACTTGCACGCCAATTTTCTACTAAAGGAAAAGCTGGTGCAGTAAGGTCAGCCAGG
TGCATAGAATCAAAACTCACCCGGCGATGCATAATTTGGGGATCTATACCAGGCAGTATG
TCGATAGCTTGCCTGACAGCCCGTACCATATCTTCTGGATCTGGTTCTGCAAGTACTATC
ATGTCATCTGGTAGAACCTGAAAAGGAGTAATTTCTCTGCAAATTGTCCAACTAGCTGAA
ATTTATGGCTCTCTACAAAAGAAACTTTGAAATCATAGAAGGGCATACCTCTGGAACCCC
TCCGACTCTAGTGCTTACAGTCAAAAGCCCACAGCTTGCTGCTTCCAGAATGGCTATGCA
AAATGCTTCTGTAAGCGAACTACAATAGCAAAGGTTAAGTTTCATGTCTCAGTATTTGCT
ATAGTTAATTGCATAACTGTCATAAACAAGGTTAACTTATCCACCTTCTAGTTTAATATT
AGGATTATGTAAGTGAAAAGAAAACGAAACCAAAAGCTCTTTTCTTTCTGTTTGCATTAG
ATCCATGAAATATATACGTACTTATAATTTCACAAGAAACATTCTCACAACATCAGTATG
TTTTATCAAGAGTCAATTAATCTGCTGGTGTCACAAGTTGGCATGAATGTTCACTTTGGT
GCTACAAGTTGTGGGGTACATCAAAGTGGTGAATTAACTTGGCTCGATTGTGCATGTACG
GTGGTTTTTTCAGTTTCATACGAACCAGGCGCTGACTAAGCAAGCCAGCGTGGCATGAGC
TTTTACAAATAAGTCCGGCTTGGCTGTACAGGATGGCGTTTCTTTTTACGGTTATGACCT
GTTTGTCTCGCCTCGATCTCTCGTCTTATTTCTCTTCTCTCGATCGTGTGAAGACGGCGG
CGAACTGGAGGACGTCGTTGACTGGCGGTGTCGAGACAGCCCCTGTATACGGTAAGCACG
GCTTCCAGTTTCTCCATACACCGCCCTTTGTCTCTCGTAGGCAGCCATGTATATGTATAC
GGACCTGTATATGTACTTGTAATGTGTGATGCCTTGTATTGATTCAGTCTAGAAACTCCC
GATAGCAGACACAGTAACACAATGCCTTGCCTGATATTACGAGAACGACATAGCCATGCC
GTTGTGGGTGACTTCCTGCCTCCCGCCCGCCTCCTGAACTGAAGATCGCCGTACACTTGT
TGCTCTGGGCTTATCCTCCTGGTTGTGTTCCATCGACTTTTTGCTCTTGATTGCCTGAGT
GCACAAGCGGGGTCCTCCTTTATTTTTTTCATGTGTGCTTGTAATCTGTGATGTGTTGTA
GGCGCCCTTTGTATCATTTAACTTATCTGAATTTTTGGACAGTTGTTAACTGAAGATATG
GACACTAGTTAACTGAATTTTTTGACACTTGCTAACTGAATTTTTTCGACACTTGTTAAC
TGAATTTTTTCGACGTCGACGATGGAGCCCCGCCTGCCGCTCATGTGGACCAGGAGGAGC
GGAGATAAGTCGTATTCGACCTCGTCGCTGGGGTCGGTGGTGGCTGTTGCGTTCTTTGCC
ATTGTCGACATGTTCGGTGCGCGGCGGGCGATCAACTTCAGGGTGGTAGACTGAATTGTT
TCGACACTTGTTAACTGAATTTTTTTGACACTTGTTAACTGAAGATTTGGACAGTTGTTA
ACTGAATATTTAAACAAGTTAACTGAATATGGATGAACACACTATGTACGTTGTGCTCTG
TTCAACTTTAATAACTGAATATTTAAACAGGTTAATTGAATATGGGTGAACACACTATGT
AGGCTGTGCTCTGTTCAGATTTAACATGACTGGAAACTAGCTCTTTGCAGTATGTTTCGA
ACTGAATATTAATTGTAATGGAGTGCTCATTGTTAACTGAATATGTTTGTGCATGTTTAT
CTGAATTATTTTGGCGCTACATGCATTGTAGGTGATTTTGATGGACTGTTCACTGTTGAG
ATTCATCACAAGGGATTTTTTTATGGAGCTGGCAGCAACAGGACCTACATGGACTATGAA
ATTATTGGTTTGACAGTTGTGATAGTGAACATGGTCTATATTGTGGATTGAAGATTTTCT
TAAGCAGCTGGGGTATGACAGAGATAGTGGACAACATGATGTGTTCTGGTGTTAGGCATA
TGTACCAGAATTTCCACGAGTTACACAAGGGGGAACAATTAAAGAACAATATTTGGGCAA
TTGCAAGAGCCATAAACAATCCTACGTACATCAAAGCCATGGAAAATATGAAGGCAGACA
GTGTGGGCGCATATAAATGGGTTAAGAAATGGCCTCCAAGGACTTGGATTAAAGCCTTTT
TAATCCGTTTCCAAAATGTGACATCCTCCTAAATAACATGTCTGAAGTATTTAACAGGTT
AGTTTGTAATATACTAATGAGCTTCAATTGTAATATGCCTATTTCAGTTTGTATTCTTCT
ATTAGTGAACTAACATGTATGTTTCTTCTTATGTCAGTTGGATATTGTCAGCAAGAGAGC
TACCAATTTTATCCATGGTGGACAACATAAACAACAAGATAACAGCAAGGTTGTACAGCA
AGCAGAAGGGAGTGGTCCTAGAAAGGAAATGGAGTGGTAGGTGCCCCAAAATTAAGGAGA
AAGTTGACAAATTTACTGATTGGGCTGCTAACTGCATGGTATTTGGAGCTGGTCAAAAGG
TTTTCAAAGTGGTCTCAGTGAACCATTCCTACATTGTGGACTTGAACATGGAAACTTGTG
ACTGCAAAAGATGGAACTTGTCAGGAATTCCATGTCATCATGCAATAGCTTGTGCTAGAG
AGGAAAGAATTGATCCTACAACTCTAGTGCACAAGTGCTATTCTGTAGATACTTACAAAA
AGCTTATGGATTGAACATAAAGCCAGTGAGAGACAAAGATCATTGGAGAAAGATGGATGG
AGTTGATGTACATCCACCTGTGTACATAAAGGTCATGGGTAGGCCAAGGAGGAACAGAAA
GAAAGATCCAGAGGAGAAGCAAATGAAAGACGGAGGGAAGAGACTAACAAAGCTTGGTGT
GTCCATGCACTGCTCTTTATGTGGAAGAGCAGATCACAACAAGAAAGGGCACAACAAGTG
AGAGGAGAACAATAGAGATGCACCTAAGCCTGTAGAAGATGATGGACAGGATGATGATGC
ACATGATTATGATGATTCTTCAATCATTTCAGTAAGTTGAAAGCAAATAATATTACTGCA
ATGTTTTCAGAATTTTAGTCCCTGCCTAGTAGACTAGACACTTTGTTTGCACTCTTTTCA
GAACATAATGCCACACACAGTGCACACACACATGGATCCTACTCAAACACGAGGGTCAAT
GGTGTTTCTCATGCAACAAATGGTAAGAATTTTGTTTTTGTTCAAAACTGAATATTCTCA
ATTCACATCAAAACTGTATCTGAAAATTGCTACATTGTTTCATATACTTAGGAGAGGAGA
GCATATGTGCCAGTTATGGATCTTGGACCTCTTCCAGAATCTTCTTTTGTTGCAAATGCT
AGAGATACCATACCCCCTCCCAGGGTTACAACTACTATGGCAACAGGCAGGGTTAGAAGA
AGAGGAGTGACAGAAGACATTCCTGAAGATGTTCCGGAAGCAAGCTACCAGGCAACTGAA
AATGCAAGAGGGAGAAAGAGGAGACCAACTGGAACAGGAAGGGGAAATGTCACAGGAGTA
GGCAGAGTACCTGGGAGAGGAGTATAGAGAGGAAATGTGAGAGTGACTAGAACAGGTAGT
GGCAGAGGGACCGGGAGAGGTAACACTGGAGGAAGGACAGGACCAGGAGCTAGGTTGTGG
AACATCATGTTTCCACCAGATGAACCAAGATCATATGTGCAAGCTGAGGAGTTCCCAGTG
GCACAAAATGCACCTCAAGAGGAGTGGCCTGATGATTTTCAGACCTTGTAGACCAAGCTG
CATATCTAATTAGTTCATGAATGAACTGAAATGCAATCAAGTTCATGTATGAACTTTTGT
AATCTGCGTTATTAGAACTAAATTACCCCTTAGCTTAAGATGAAACATGTCATGAGCTGA
ACATATGTTTTGCTTGGATGTTTAAATGAACATGTATGAGTTTGTTATATGCTTTTGAAG
ATGACCAGTGTTGATACCTCTGAATGTGCTCTGTATGGTTTCTCTGAAACTGATTTTTTC
AAAAATTTACTTCATTTAGTATTTGAACTCTTGCTGTGCACTTTCTGATACAAACCTTGC
TGTGGAGTTTCTCATAGAAATTAGTCAAGCTGCAACAGATTTAACAGTACATGATGAAAT
GATCAAATGTATCACTTTGTTTAGCAACTATGCATAGATATATGTAATGTTCAGTGATGT
TTCACATCTGAATTTTGGACAGTTGTTAACTGAATTTTTCGACACTTGCTAACTGAATTT
TTCGACACTTATTAACTGAAATTTTCGACACTTGCTAACTGAAGATTTCGACACTTGTTA
ACTGAAGGTGGTTTCGGTAAAAGCTCATGCCATGCTGGCTTGCTTAGTCAGCGCCTGGTT
CATATCAAACTGAGAAAAGCACCGTACATGCACAATCAAGCCAAGTTTTTTCACCACTTT
GATGTACCCCACAACTTGTAGCACCAAAGTGAACATTCATGCCAAATTGTGACACCAACA
GTCTAATTGACTCTTTTATTAAATGATATTCTACACATATGTTTGAAGAACCAGAGGCTC
ACAGGAACAATTCAATAATCTGGTACAAATATGACCAACTGCAGAAGAGGTCCAACAGAT
CCAAAGCGGCTCAAAATATCTGTTCAAGGAGAGCGCTAATCATTTCAAACATCCCAATAC
AACAATTTTAGCTACTCTGTTAATGATAGTGATCATTGCCACATACGCCTTGTGTTTTTA
GAATTCATTGGACAGTTTGATAAAAGCAACTTCCTTTGTCACAACAAAGAAACTTAAAAC
TGGAACCTGACAAGACTATCTCAACACACCAGAGCATGCAATAGTCGATGATAAAGTAGA
CATACAGTAAGAACAGAGAAGGTCACATATATAACCAACAATCTAGATATTTTGAACACA
AAAGAATGAAAACTCAGAAAGG