morexGenes - Barley RNA-seq Database

Contig contig_62510
Source Contig contig_62510
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_62510 (8230 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_62510

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72860	4	1915 bp	MLOC_72860.1	Available	Available	LOC_Os01g06490.1, FRAME:+1, EVALUE:0.0, 13101.m00639 protein OsSCP1 - Putative Serine Carboxypeptidase homologue, expressed
MLOC_72861	1	1206 bp	MLOC_72861.1	Available	Available	LOC_Os01g06500.2, FRAME:-1, EVALUE:5e-104, 13101.m14931 protein PHLOEM 2-LIKE A5, putative, expressed
CDS Structure of MLOC_72860

CDS Structure of MLOC_72861

Contig Sequence (8230 bp)

>contig_62510 8230 assembly3_WGSMorex_rbca.fasta
TCAAAGTTTGTTTGGTATATTAATTCTTATGAACTGTAGTTTAACTGTGTGAACAATGCC
AACTTTTGCAGATGCAGAATCAGTTTAAGGCATACATGGTAGGATGGAAGAGTTGCTGAG
GTGGTAGATGGAAGCATACATGTCATCTACAAAAAAAAAGCTTGATTCATGGTGCAAGTT
GATCTTGCTTTGTGGATTTTGATCTTTCTTGTACTATGAAAGTATGAATTTTGTCCTGTA
GTTTAATTATTATCTGAGAGAGTGTAAGATGTAGATAAATGTTTAATTTGAAGAGAGATT
CGGAGTAGTTTTATCTGAAAAAGTCTATTTTGTTGCAGTATATGGATTGTATATGGACAA
TATTTTTATCTCAGAAAGTCAATTTTTTCTGAAGAGAGATTTGGTGTATTTTTGTCTGAG
AAAGTATGAATGTTGCAGTATGTGGACAGTATATGGACACCATAAGTCCCGCATAAAAAT
TGACTGGGCTACCACTTAATCCCACGTAAAAAGTGATGGCCAATGTGGACAAGTCACAGA
ACGTCCAGCGAGCCGCCCACTTTCATCCGGACGTCTGACCGACCCAAACAGACAAAAATG
AACAAAATCGTGGTCCGTTTGGGTCGCTGGAATTGCCGGTAACATTTTTCAGGAAGATAA
AGCTCTATAGCTGGTGGAAAAAATAAATACAGGTGGCCCATGGACAATGATGAGCTGACG
CGTGACGATGCACTTATCTAGCCACACGATCCAAATAGTAGGAAATGTCAAATTAAAGCC
AAATTACCACTCCACGCCTTCCACGCTTCCTCCATCCCTCTCACGAGTCGCCATTGGCCT
CGCGTTGGCTCACTCCTCGCAGCACACAGTCCTGGTCTCCGCTGAGCCACCGCGAGCGCC
AATGGCGGTGGCCGTGCTGCTGGCCGCCATCCTGGCGCTGTGCCCGCTCCCCCTTTCCCT
CGCGTCCCCCTCTGCGGCGGCGGCGGCCGACCGCATCACGCGCCTGCCGGGCCAGCCGCC
GGTCAACTTCTCCATGTACTCGGGCTACGTCACCGTCGACGCCCCCGCGGGCCGCGCCCT
CTTCTACTGGCTCGTCGAGGCCGCCGTCGCGAAGCCCAAGTCCGCCCCGCTCGTGCTCTG
GCTCAACGGCGGGCCCGGCTGCTCCTCCGTCGGCTACGGCGCCTCCGAGGAGCTCGGCGC
CTTCCGGATCAACGCCGACGGCAGGACGCTCTCCATCAACCCCTACTCCTGGAACAAAAG
TAGATTCCTCTCTCTTTTCGCCGTTCGATCGGCAAGTGTGTTGCGCTCTGACGCGGGGTG
GATCCGTTCGTTGTGTCGCAGTGGCGAACGTGCTGTTCCTGGACGCCCCCGCCGGCGTCG
GGTACTCCTACTCCAACACCAGCTCCGATCTGCTCACCCCCGGCGACAACAAGACAGGTG
AATTGAGATCAGGCTACCTACTTGCCTCATGCTAGTGCTGCACTTGCTCTAGTGGATATG
TGTTGTGCTGAATGAACACCAATGCTGCTGTGCAGCTCATGATTCGTACGCTTTCCTGGT
GAATTGGCTGGAGAGGTTTCCGCAGTACAAGTACCGTGATTTCTACATCGCCGGAGAGAG
CTATGCAGGTAAACTGCAGACAAAATTGGTTCATTCTGTTTCTAGCATGGAGGCTCACTT
CTGAATTTAGCAGAAATCACATGTATATGGTTTATGTGCCAAAGTGCCTGCATAGTTTAC
TCTTGCTGCCATGACTGCTTTTCAGGGCACTATGTCCCTCAGTTGTCTCAACTAGTGCAT
AGGAACAACAAGGGAGTGAGGAAGCCCATCCTGAACTTCAAAGGCTTCATGGTTAGAACT
TCTTGAGCTCTTCTTTTGGTGCTCTCTTAAACTGTCTCGTGATCTTGTTCTTACATATGG
TCTGATATCTAGGTCGGAAATGCGGTTATTGATGATTACCATGATTTCGTTGGAACGTTC
GAGTATTGGTGGACGCACGGGCTGATCTCTGATGACACCTATCAGAAGCTGCAGCTGGCT
TGTGAGTTCGATTCAGCTGAGCACGAATCCGAGGCATGCAACAAGATTAATAATGTTGCT
GAAGCTGAGGAAGGCCTGATTGACGCATACAGCATCTACACACCTACCTGTAAGAAGACC
TCACTTCATAGGCGAAGGCTAATCAAGGGCCGCAGGGTGAGCTTATCAACTACTGAAACT
ATAATTCTGCTGATAGCTAAGCTAGTACTACTGTAACAGAATGGTATGTTGGCACATTTG
ATTATTATAATGATTACTATGCAGCTAGTATTTAAAGTACAGTTTAGACTCCTCTGAGAT
TTGTATGAACATAATAAAATTTCATATGCTGCCACCTAACAGTATTCTCTGTTTAAAATG
TAGCCCTGGTTGCCAAGAGGATACGATCCCTGCACCGAACAGTACTCAACAAAGTACTAC
AATCTACCAGAAGTGCAGAAAGCTTTTCGTGCCAATGTTACGGGAATACCGTATTCCTGG
ACCGCCTGCAGGTCTGTTGAACTGGTTTCATCTTGTTTTCCCCACAACTAGTTCCCTGTG
ACTGACCGGAAACCCTGCTTGTTAATGATAGTTTGCGCTAAACTTACTCCTATTTCACAG
TGATGTCTTGTCTGACCATTGGAAAGATTCACCGAGGTCCATGCTTCCTATTTACCGCGA
ACTGATTGCAGCTGGCATAAGAATATGGGTCTTCAGGTACACCAAATTTATGTTGAAAAC
ATGATTTGGGCTGCATCATAAATCTTTAACAATGGTTCCAATGCTGATATATGATCATTA
TTGACTGTACGGCTCACAGTATTAAGTAGCCCGTCTGGCCTTCTGAGGTTTTAATTGTTT
AAATTGGGAAATTTGACAGTGGTGATGCCGATTCCGTAGTACCCCTCACTGCTACAAGAT
ACTCCATTGATGCACTATATCTTCCGACCGTTACTAATTGGTATCCGTGGTATGATGAGG
AAGAGGTTAGTCAGAACAGTACTAAAACAACAATAACAGTTTTATTCCCTTATTATTCAC
TTTGCTACATCTATGCTCATCATTTTCTAATGGTGTGGATCTTGCTTAGGTTGCTGGTTG
GTGCCAAGTGTACAAAGGTTTGACGTTGGTGACAATACGAGGCGCAGGGCATGAGGTTCC
CCTTCATCGTCCACAACAAGCCTTGAAGCTTTTTGAGCATTTCTTGCAAGATAAACCCAT
GCCTCGGCCTGCACATAGCATTCAGTCGTTTTAGAATTTTCTTCCACTTAAAATGGAAGA
TCAGCCCATGAAATCATGTTGTACAATTTCAAGTCCAGTTACCAGATTTTCAGTTGAGCA
GATTTTCTCTGTCCATTTGATTTCAGCTTGAGAAATGGGAACAGAATCCCACTGAAGTGG
GACAATTAGAGCTTTGTTTTTAGTTTTCATGAGCTCTGGGGTGGCAGTGTAATTTGAATA
ATAATTCCATATTGGACACTATAAAATGTGACCATGTCACTGTTATCTGTTAAACAACTG
TGCCACCCTTGATCAAGTTGCGGGCTTGAACTCTCCCTTACCTGTTTTCTGATCTGATCC
AATCAACAAACATGTCAAGGAACGTGTTAAACTTGTAATGTGTCAACCTTGCTGAGTGGT
GATTTATAAGCTTTGTGCCTTCTCTAAGTTGTCCTCTGTGGCGACTCGTATTTAGATAAA
TGTTCGAGTAATTTTTGGTAAGCATATCACATATTACAGAAAAACAGAAAATAGTGCAGT
GTTGAATAAATGACATTACTATTGCAGTCAGATAACCAGTACTTAGAGGTTTATAGCAAC
CGAGGAAAGTGATCTCAGATTCTTTCTAGTGCAACTTTTTCTTCAAGACATAACATTCAT
TCAAAACTCCTGATATTTTGTACTGTAACAGTGAAAACATTATTCCCATGCATGAAACTG
ATCTTAGCGCAGTCGACAAACAACAGCCAATGATCGCTGGTAACAAAACACAACCAAAAC
CAAATCATTCATTCTTTTGGGATGATCTTGATGCCCTTGATAAGGAGCCCCCTCTTCCAC
TGCCCACCATCATACTCAAACATGGAGATCTCAACCTCTCCATTCTGCCCCTTGTGCGGC
TTAACCTCCCCAACCTTGACCTGCAGCCACTTCCCCCTGGGCTTCTCCTGCAGGTTCTCC
TTCTGCTGCTGGATCGTGCCGTCGGGGAACTTGAGCCGGAGGTTCACCGGCGTCGACCAC
CCGTAGGCCGGGTCGTCGAGCTTCACCTCGAAGAAGACCTCGTAGGTGACTCCTGGCGTG
AGATGGGACAGCTCCAGCTTCCCTTGGACCTCCAGCCAGCAGACGTTCTGCAGCGCCACC
GTCTCGATTCCGGCCTGGGCGTCACTGATGGTAACATTTCAGGTTCAGAACATCAGGTTA
AGTATGTATATATGTACACATGTTTATGATTCTTAACTAACCTTCCTTCTTTCAGGGGGT
GCCAAGTCCAGTACTTGGGGTCTTCGCTCCAGGTGATGGCCAGGCCTCTAGGGAACAACA
TGAAGCAGTTGTGCCTGGTCCTCTCGTCCACCCAGTACTTCTGCACCGTTGCAAACAATG
TTTGAAGCATAAGTTACATCACATATCAGATTATCAGTTCAGTGTTGAGAAGAAGTAAAC
CTTTGTTTTCCCGGCCAAGAAGATCCCGGCGGTGACCTGATCTTCCAGCGCGGCTACGTC
GGTGACATTCTCCCCGGCGACGATCTCCCGGAGCATGTGAGGAGCCGGCGCCCTCTTGGA
CTGGGCCTGGTTGGCGGTGTCAGAAGTAGAAGAAGCGCTGAGCGCCGTCGGCACGACATG
GCCATCCGCGGTGGGTGAGGAGGCGGAGGACGCCTCCGGTCGCGACGGCGCCGCCCCCAT
GCTCGGTCGGTTTCTCTCAAGTCTGAACTCCTCGTTGGTTCCAGCAACAGTCCAAGCAGG
CGGTGGCGTATATATAGCTGCAGATTGGCTAGACGCCTAGAAGCATTACGGTTTCGTGGT
AAAGGAGTGAAGACGGAATTTGATGACCTTTTCGCGCCTACGGTCGTGCGCTGGTCGGCA
TGCGAGAGCTCTCCAAGATGATATTGTTGGCAAAGATGATGGCATCGGGATAACAGCGGC
CGAGAAAATGCGGCGGAGAACATCAGATTCCGTAAACTTTGCCTTTTACACCCGCTTTGA
GCTGAGCTCGGCATCTGATTCCATGATCCGGGGGATGAAGCTTGTGCCACGCACGGAAGA
ATCTGCCTCCTTTTTCGCGGGGTCAAGGATAGCATGCTGCCGTAGCAGTGATGCTTCGGT
TGATGGTATTGTCGCGACACACGGAGCGACGCGTCGTCATGGGCTCATGGGGGATACAGT
CTTGTCAGGTCTGTAGTCTGGAGTGTAGATTAGAACCAAATATGTTCTGATTGAAGTCTG
ATTGGAGTTGCTCTGGGGACGCAAACATGTACCCATTTCATTTTCAGTGTAGGCAGAAAC
TTCACGGTTGCACGTCAAGGCTGTGTTGCACACAGAGGGTCCTCTGCGGCGCGGGAGTTT
CGTGTTGTGTTAGATCGTGAAGCGAGGCGGAGTTAATTATAGAAAACATTAATATTGAAG
GTTAGGGTTACAAAAACCACACTTCTACGAAATTGTATCAAAAACATAACCACACTTCTA
CGAAATTGTATCAAAAACATTATTTTTCAGACGAAAGAAGTACAAATACCCCCCCTGAAC
TGTCAGATTCTGAATAGATCACCCCCAACCGCAAAAACCGGAATCTTAATCCCGTAGACT
GACAAATACCAGTCAAATCACCCCTGAGACCGTTTTGATGGTTTTGAGCACCCGGTTTTG
CATACATGGCAGGGACAGTTGAGCACTTTAAATGAGGGGGTTGCCACATCGGCAATGCTT
GGTCTAATTCGCCCCCTCCCCTGCCTCGACCGCTCCGCTTCACCTTTTCGCCTCCCGCTC
CCCTCTCCTCTCTCTTCGACGACACGGCGGCGATTAGGGCAACGACGGTGGCGCGGACAT
ATTTCATTTACTGCTTGTGAACATATTTTATTTACTGCTCTGATGAGGCCCTTCTGCTCG
TCAGAGATGAAAACCCAGCCATTACCATGATGATTAATCTGAATGTCCTTCTGAAGAAAT
GACAGAAACCAGTACCAACCATCATAACTCTCAACCTCAACAGTTGCCCATGCAATTGGA
TACATTTGGTTGTTGGCATCAATCCCAATAACACAAAGAATTTGTCCATGCACTGCCCCC
TTGAGGAAACAATCATCTAACCCAATAACTCTTCTACATCCAGCCATAAAATCTTTCTTG
TAACCATCTAGACACACATACATCCTCTCAAATACATGTCTATCATGTACATCAGGGTCC
AATGTGACTGCAACAGTACTTTCAGAATTGCTCCTAAGTAACTCCAGGTGGTAGTCAAAT
ACTCTAGAATACTCACAATTAGTTGAATCTATGAGCTTTTTCATTACAAGCTTCTTTGCC
CTCTTACATTTGGATATGTTCACATCAGCTAGCATATCTTCTAGTACAACCTCTTGCATT
TTCTCCACCCTCCAAGTTGGGTTATCTTTTATTTGTCTGAAATATTTCCTAGCAATCACA
GTACTTGTCACCAACTTATTATCTCTTCTAGGCACACAAGTATGGACATTGTTGTACCTC
TGAACTATCAACCAGTTAGATTTGCTATTTATTGACCCATATATACTCCAATTGCAACCT
TTCCAGCTACACTTCGCACTCACTCTCTTCTTCTCATCTTTGGGAAATATCAAATGATGG
AAATTCTTCAGTCCATATTTAACCAAAGCATTTTTGAATTTTCTGCTATCTGAAAAAGCC
ATGCCAACCTCAAACTGGGGTGCACCTGAAGTGTCATCATACACCTTATGGTTTGTCTTT
CTCCTTCTGACAACATTAACCTCTCCATCATTGGCCTCATCATAAGAGAGATCATCATCA
CTTTCAAAATAAGGAGTGTCATCTGCATCATCATCCAGCTTACAGGTTTCTGGTACAATG
AACTCCTCAGGAACATTGCAAGTTATTGCTTCTTCCTCCCTAAGCATCTTCTTTCTCTTT
TTCAACTTGAACTCTCTGGCATATTTTCTGTCCTCATTAATTTCATCATCTTCAACAGAA
CTATTGCTCTCTGCAGGAGGCACAACATAGTCACTGTCACTATCTGAGTCACCTGAAACC
CGCACCTCCTCAATTGCAACACCTTTTCCTCTTTCAGATACTGAGCTTTCACTCCTAAAC
ACATGCAATTTGGTTATGTATTGATCCTCTTCTGCCTTTCTTTCCTGTGCCTGCACCTCC
TCTGTTTGCTCTGCTTGATGATCCTCTACAAATTCAAACTCCCAATCACTTGCTTCAGGA
CTTTCCTCAGCCGGAATGGTAACATATATGTCAATCACACCAGCATCAGTCACATGATTA
GCCATCACCTCCACTGATTGTTGATCATCAAGTACAACCAAAGCATTTGCCATATCACCA
CCTGGATATTTCCACTGCAACTTGGTGTTTTCTAGAACAGTTTCAGAGTAGGCTACATGA
TCTGCAATTTTTTTCTTCAGTTCACATAGTGATAAATTTGTGTGCTCAATGCTGGGCATC
CCAGTTTTTCCTCCCAAATACACCCAATCATTTCCATCATGCTCAAAATCCCCACTGAAA
TGAAATCTGACAGACAGATAGTCCAGTGGATCCATTCCTAAATAAAAAATCACACAAAAA
CAGGGCTAAGTACAAGTACTGAAGTTTTCTACCAAAAGAAGTCTTCTTTCTTCACATCAA
AACAGAGCATATGCACACCAATTTCATGTATACAAAAGCCTAAACATGAACTAAACCCTA
GAACCCAAATAAAATCGACAGAAACCCCCAATCTGACAAGACTCATGCGTACAAAAATGT
ACGATTTGCAGAGCAATGTTACGGTCACTGTAGCACGTATGCGGTGTGTACATGCCTAGT
TTGACCTATTGTTGACCGCCACGTAGTGGTCTCTCATTCGGTCAACGATTCATGAAGGTT
TTTTTTGTAAAAGAACCAAAATCCCCAATCCCTCAAATCCCTAACCCGCGGCGTCCCCCT
CAAATCCCTAACCCTCCGTCGCTCTGCTCCGCCTCCGTCCCTCTGCTCGCTCCCCACCCC
CGCCCTTGCC