morexGenes - Barley RNA-seq Database

Contig contig_62477
Source Contig contig_62477
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_62477 (10040 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_62477

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72838	1	1360 bp	MLOC_72838.1	Available	Available	LOC_Os10g42500.1, FRAME:+3, EVALUE:7e-138, 13110.m03995 protein PAP fibrillin family domain containing protein, expressed
MLOC_72839	1	3056 bp	AK364034	Available	Available	None
CDS Structure of MLOC_72838

CDS Structure of MLOC_72839

Contig Sequence (10040 bp)

>contig_62477 10040 assembly3_WGSMorex_rbca.fasta
TTTCCATTAAGGATAAAACAACAGGGTCTGAACATATTGCTTGTNNNNNTTTGTCTACAT
CATGCCATCTTGCTCCAAGCATTACTCTATTTCATACTTAATACTCTAAATATGATGGAT
AGCGATTGATGAGTGGAGTAATAGTAGTAGATGCACGCAGGATTCAATCTAGTTTTTTAT
GGACATGATGCATGTATACATGATCATTGACGTGAATAACATGGCATAACTATGCGTTAT
TCTGTCAATTCTCCAACATTAATTTGTTTACCCATCGTATGTTGTGTTCAAGAGAGAAGC
CTCTAAGGAATCTATGGCCCCGGGGTCTACTTAAATATATTTACCAAGACTCCATAAATA
CTTTCCTACAATTTATTTACTGCTATTTACTTTTATATATTTCGATTATCTATCTATCAG
TATTTAATCCTTGCAAGTAACGATCTCAAGGGGGCTTGACAACCCTCTTGCCCGTGTCGG
GTGCAAGTGTTTGGTTATGCGTGTAGGTGTTGTCGAAGGGGTTTGTTTGATTCTCCTATT
GGTTTAATAAGCTTGGTTCTCACTGAGGGAAATACTTATCTCTATTCTGCTGCATCTCCC
CTCCTATTCAAGGAAAATCCCAACGCGGTTTACAAGTAGGAGTTAGCGACTCGGTAATTA
ATACACAATTAATTAACCATTCCTGACTCGCAAAAATAAGGCTTGGCTCAGCTCATTCCT
GCAACCCACGGCGCACGCGCGCATTGTGACAAGGCGAGGCGTGCGGCGGAGGAGGAGGAG
CGCATATGTACAACTCCTCTTCCCAAGCTCCGAGTGGCATGTGGTAGAGGAGCCTAAGGG
GTCTCACTCTCACTCCACTAGCAGTATGGTACTAAACTTCCCACCGCCTGCCATACACCT
ACATGGGCCTTAGTGATTAACCAGGGATTACTGTCTTATATGGACCAAAGCCCATTTATA
ATCCAACAATCCCCCAATACATCTGAAGGAACATAAGTTTGTCAACTATTTCAAACAATG
TTTGATATACCAGAATTTTTAGTGGAGACAATTAAGTTGATCTTCCACCTAGAGCAACAG
GATTATACTTCTCCACAAGTGAACAATGGACTATGCCTTGAATTGTCAGTTTAACGTGCA
GAAGTTTCCCCTATTGTTAGCGGATACGTGGTTGTTGAAGGCTAAACCCCACGGGTGAAG
CTTATTAGTCATACTCCTTACCTTCTCATGAGCTTCCTAGAGATTACCCAATCTCATAGA
CTATGAATAGCAGTCGGGTTTGCATAGATGTGTTCCTCCAAAGAATGCTCCATAGGATAG
TGTCTTGCTTACACAAGCTTTGGAATACATTAAGACGCAAGTCAGCCTACCTTATAGATT
ATGAGAATATTGCATCTCCAACGGAGTGGGTTAGTAAGGATACTTTCCTCAACTGGCCGG
TGGATTGTTTTCTCAAGACCTAATTCACGGGATCTTTGATCACGTAGGTTGGGTTACCCC
CATGGCAACTTATGTGGGTCTCATGCCCATCTCCCTCGATGCATTTTCTATCACAATCCT
TGGTAGCTCTTTCGTAAAGGGATATGCAAGATTCTTAGTCGTCTAGATATAATCCAATTC
TATTACTTCGGAGTTTCTTGAATGCCTGACAACTTACAGTCTTCTTCTTATATGCTTTGT
GGATTGTATGTTGTCCTTTGAACTCTTTGACTTGGCAATCATTGTCTGATTATCACAGTT
CATAAGGATAACTGGGACTAACTTATCAACCACTGGAAAATCTATCAAAAACTCTCAAAG
CCATTCTGCTTCGACGCAAGATGTGTCTAATACTGTGAGTTCTGCTTCCAAAGTCGATCT
CGTTAAGATTGTGTGCTTGCAGGAATTTCAGGAAACAACAACACCACCAAGTGTGAACAC
ATATCCACTTACGGCTTTCATCTCATCGGCATCAAATATCCAATTCAAATCAATATACCC
TTCAAATCCTGTCGGGTACCTAGAATAGTGAATTCCGTAGTTCGTGGTACCTTGTAAATA
ACACATGACTCGCTCAACAACATGCAATGCATATATCCCGGGTTGGAAACAGACCGACTC
AGTTTGCACACATCAAATGAGATGTCAGGCCAAGTAGCACACGCTAGGTATATGAGTGAA
CCAATCACTTGGGAGTATCTCAATTGATCTACATGCAGTCATGCCTTCGGACTTTCGAAT
CCGCACACTAGGATCATATGGTGTTGTAGAATGTTTGCAGTCAGAATATCCAAAACGACC
CAAAATCTTCTCAACAAAATTTAGGGAAAGAAGTTTACGGGAACTTGACAAAAGTTGCCC
GAGACAACTTTTCCTAAATTATACCGTCATCCCCTAAAGTGGTTTTATAGGATTTTTTTT
AGGGGAGGTGTTGGAGTTGCTCTAAGAGCATCTCTAGCACACCCCTTATACCGCAGTACC
ATAAAAACATTGTGAGGAAACCCTAAAACCTGTTTTGCGAAACCGTGCGGGTTTTGGGGG
AAACAAATCCCGCAAAAAAATTACCGTAAAATCGGATATTCCCCGTGGTCTTCTTCTTAC
TCTCACCCATGTATGCCTCAATCCCGAGCGAAATAAATCTTCAGCAATCATTGCACACAT
GGCTACACCGAATATAGAAGACTGGAGCGTGATCCCGAGCGAGTCACCGTACTTGGAGTC
GATGGCCCTGGGCAAGTCGGGACTAGGAGCAGCTTGGGCCACCGCACACCGTGATGCCCG
TCACCGTACAGGACGAACCATGCGCCACCGTACACCGTGCAGGCCGCCTTGCTCGTCCCG
ACCACGCGCCTTGAGGCCCAGGTCGGAGCCGTGACTGCTCGTGCAACACCACCACCTCGT
CGGCAATGCTAACGTACATCATGTCCACAAACATTCGCGACGACAACGACATGTCTGTCG
TCCCTCCCAAGAAGCCGCGCGCACAATTCGTGCGTGGCCCGCCGAAATCAACTAGAATCG
GGCATGTCCGCTAAAAATTTGGCTAGAATCGAAACCGACGCGATGGATCTTGGTCGAAAT
GGAGACTATTCTAACGGTTGGACGTGAAACTTCCCTCTCGCCAATCATCTTTTTTTTTGT
TAGAAGGTGCACTGAATATTTTGCCTGCAATACTAAACCTATGAGATATTGGAGGTTCGT
TTTAAGTACCCTAAAAAACGAATCAACCCATTTTGAGGGATCTGGCCGAGTCAAAAATTT
CACTCAAAACCATAAAAAAAGTCGTTATTTTACAATTTTAGCTCTTTTAAGCGATCTGCT
AGAAAATCGGGGTTCTGATTTTACGCTGTAAATTTGCTATTTAGTTTTATTTTCATACAT
AAACTTTCAGGAAAAAAAAAGAGGAAGGGCAAGAAGCGCACGAATCTTGGAACGATCGAA
AAACATCTCGAATTTTAGGGGGTTTACGGACATTGCTCCGGTGATTTTTGTAAAAGAAAG
AAAATCGCTGTTTGGGCTCTCCCCTCACCTCCCCGCCCGCCCACACAAGTGACCAGAGGC
CAACAGAAGAGGAGTGGAATCATTCATTCATTCATTCATCCATGGCTCCCCTCTTCGCCT
CCTGCCACGCCTCCCACGCGTCGCTCCTACTCCTCTCCCCCAACCCCGCCGCCGCCGCGC
GTCTCCGCGTCGGTGGCCTCCGAGTCAGGCGGCCCCGCCGCCTCCGCCTCCCCGTACGCA
CAGCCGCGGGAGGCAGCCCACTCGACGCCGAGATCCCCGACCCCACAGTCGACGACGACG
AGTGGGGCCGCGAGCCGCCCGCTTCCGCGTCGGGTAACTCGCGCCCCGGCGTCACCGACG
AGTGGGGCGAGCCGGGGGTGCCCGAGCCCGAGCAGCCCTCCGGCGCTGACACCCCTACCA
ACGACGACGAGTGGGGCGGGGAGACCACGCCGACGCCGCCCAAGGCGAAGGAGCCTCCTC
TCTTTTTTGCCGATAAGGCGGAGGAGGATCCGGTTACGAAGGAGGACGAGGGAAGGGAGG
AGCTGAAGCGGTGCTTGGTAGACACGGTGTACGGCTCCGGCCTGGGCCTCAAGGCGTCCT
CGGAGGTCAGGGGGGAGGTCGTGGAGCTCGTGGCCCAGCTCGAGGCAGCCAACCCTACGT
CCGCGCCCGTCCAGGCGTCAGAGCTCGACGGAAACTGGATCCTCTTGTGAGCCTTCCCAC
TTCTTGCTCTCTGTCAGTAGTACTCGCTAGTTCGATCGTCAGTTCCATACGTCAGTGGTA
TACTTTATTTGAATTTTAGCTACTGAATGATTGCGTGCTGTTGCCGTTATTCTTCTGACC
AAAGGGTGTTCTAAGTTGAGACCTCCTTTGGTTCATAGGATAGGAATGTCATAGCAATGG
AAAAATCATAGGAAATGAGATGACATGTATTTCAATTCCTACAGGGAAAGAGATGTCATT
TGAAGCATAGGATAGAAAATTTTCCATTGAGTTTAGGCTAATGTTTATTTTTTCTCTTTG
AAATGTGAAGGATTGGTTCCTATCCTACGTAGGAATAGGAATCCATTCCTACAAATCAAA
GAGCTCCAAAGGAACTTTTCCTGAAAACCCTATCCTATATAATTCCTGCAAAAATCCTTA
AGCCAAAGGAGGCCGAACTGTGTGAGCAGTCAACTTCTTATAATACTCTTGCTCTGCCGA
AGCAGATGACCCATTTCCCCCCTCTTAGAATTCTCATCAGCACCGAGGGGTTCCATTCAG
TTACTTGTACCTACTTAATTGTGAATGGTCGTCAATTTTCAGGTATACGGCATATTCTGA
GCTTCTACCGATTCTGCTTGCCGGGGCAACACCATTCGCCAGAGTTGATAAGATATCCCA
AGAAATCGACTCGAGAAGCATGACGATAATTAATGCTTCAACTATTTCGACTCCATTTGC
TTCGTTTTCATTCAGTGCAACTGCTTCTTTTGAAGTACAAACTCCATCAAGGATAGAGGT
ACAGACCTGCTTCTTGTCAATGTTATTCTAGTCTCAGTTTATATTGCATTGGTTATTCAC
CTTTCCAGACATGTCATGTGGAACAATTAATTTGCTTCTTCAGTTACAAATAGAACACTT
TGTATCATTAAATCATTTCGCTAGTTACATTTGCTTCTCATGAATGTTATTTTAAAACAC
TTTGTATTATGAAATCCAGATAGTGTGTAGCCCCTTCGTCAAACCATTTCGCTAGTTACA
TCTACTTGCTATTTTTAAGAAATATGGGATGTAAAATACTCCCTCCGTGGCTCCGTCCCA
TAATATAAGAGCATTTTTGACACTGGGAGAGGCCCCTTTGTGTTGCGCTAGACTGAGATA
TATAATGACCCCTTTGTGTTCAGCTACACTAAGATATATAATCTATCATGGCTGCAAGCC
TTCACTCAAGCATTCAACAGACGCATTTGATACCGGTATTGCCACCTACCTGTCATTCTC
CTAGTTACGGTGTACATAGGATGATAAGCAAATCTCCCGTACCAAATATTTGAGGTGCAC
ATCATGGTTATTAAAAGATTTCTTAGACGTTTCATCAGTTACAAGAATACAAGTTACCCT
TTACCATGTACTAGAAGGGTTGGACGTGCTTTGCTGCGTTGTTGGTGTTGTTGGGTTTCT
TAAAAAAATAATCACCTTGTTTCAAAATAGAAGGTGTGTTACTTTTTTAAAGAGTCAAAC
CTTTTAAATTTAATCGAATTTGTAAAGATATATACCAAATCCATAATATCACATTGATAT
TTTTAGATTCATCGTGATGATTTTTTATACTTATTTTGTTTAATATAGTGGATGTCCTTA
TTTTTGCTGTGAACTTGGTCAGATTTAAGAAATTTGACTTTCCAAAAAACTAATACCCCT
TATATTTTGGAACTGATGGAATATTTAGTTTGGCGGGTGGGAGAGATGATAGTATGTTTT
ATTTTTATTTATAATGTGATGATTTGGTGCGCCATTTGTGATGTAATTTTGTGTTATCTT
GCTAACAAACTTATATTTATGTGGGAAACTTTTTGTTTCAGTGATTGCATGTACTACATT
GATGCTATAATATCACATGGTTGCGCTTTTTTTTCTAGGTGATGCGAGGGTGTGCAGATT
TTATAGACCGTTTGCTGCTGATTGCTTTAAAAATTCTAAATTGAATACCTCAATTAATTG
TGAGGCCTTAAAAATTGGAAGCATAGTGTATAGTATAAAAGAATTGAATGAAAGGGCTTT
GAAAAATTGTTGACCCGGTCAAAATTAGACCCAATTCTAATTCAAGACCTCAATAGAATG
TGGGCTTTTTAAAACTAGGGAGCTTAGTGTTATAGAGTATGGAAGCCGCCTTTGATAACA
TAGATATGCCAAACTGACACATTACTTGCTCTCATGAAGGTACAATTCAAAGAGGGGAGC
TTTCAGCCTCCAGAGATATCGTCTTCAGTAAATCTACCTGAACAGATCGCCATATTCGGG
CAGAAGATCAGCCTGGGGCCTGTTAAGCAGCTGCTGGAGCCTTTGCAGCGAGCATTTGCT
AGCATTGCAGGGTCCATCTCTGGGCAGCCACCTTTAAAGGTACCGATTCCCGGCGACAAC
AAGGCCAAGTCGTGGCTTTTGACAACCTACCTCGACAAAGACTTGAGGATATCAAAAGGT
GATGGGGGTGGCGTGTTTATTCTTGCCAAAGAGGGGAGCCCTTTACTAGATTAACTGTAC
ATGTGTAATAGGTGTCATTATTCATATGTGCAAGGTTGAAAACCACGCTACAAGCATTCT
TCTCCCCCTTTGATACACAATTTTCTGGTGGTTTTCTAGAGTCTGACAGAACCAACTAAA
TGTTGTCAGTATGGAGTCTCCATACGCTTTCTGCTCTTTGGTAACTATAAGTGACATTTT
GTGTTATCAAAGAAGGAATGTGCATGTTACGTTGTCACAAGAATATATTTTTCCTCTCTG
TAGCTCACGCAACTAAACCAGAATTACCTGAGCACCATGACATGGATTGCATGCCTGATA
ACTCTGGATACAATTTTTTTTTAAACGCATCATTTTTGAAAATTTAGTTCATTTGATTGA
ACTAAGGAATGTGGGAGGGTACCTAAGGTTCACAAATTTGCATTCCTAGATACAATGCAC
ATAACTTGAGGCTGTGAACTGTGCTTGGAATTAGGATTTCAACTTAAGTGATCAACTATT
CTACTGTACATCAATAACTGACATCTGTCATGCTTCATGCTTCAAACACAAATGGAACTG
AGAATATGGCAGCAACACAACGCTCCTCATCAAATTACATGTGTATCAGGCAACTATAAC
TATCTCCTAGAGAACATTCTAAAAAACAGAAGCCTGTAATCTCCACCTTTTCTCTCTAGT
CTAAAAAAACAGAAGCCTGTAAACACTACATAATTACAGAAGCATTTCCATGTGAAAAAA
CTGTGGACGAAAATTGGCGTCGCCTTGTAGAGTTGTTATGGTACAACAATTCTAAGTCGC
AAGTGGTTACCCCCATTTATCGATTGACTTGAAGATGCAAAAACGGCAAGCCGCATCCCA
CACATAACTCAGATCACATTTTTCATCTGCTTACATGGCAAGAAAGTTTCCTTGTAGTTT
GAGTTCACCCTTCATCATGATTTCTGCACGAAAAACATAGGTTACTATGTCCATCACGTA
CAGATGCACTGGCCCAAACACATGTACTGTGAGAGGGAAGTGGCTATTCATAATTCAATT
CTGTTGTTCATTTCATGTCTAGACCACTGGAAAACATAATATCAACACTGTAGATTCAAT
TATACAAAAAGCATACCATTTCCAATATGATAAGCGTGCTGTCGAAATAAATAGTTAATC
TTATCATATGCATGCTTGTGACTATTGACTAACCTTGACGAGTACCATTCAGATATGGGG
AAAATAACATGGAACTGTGTTGTATTAAAAATTTTAGATGTGTTTTTCCTCTAAACATTT
GATGTGTTGATGTTTAGCAAGAAAACACAAGTCCCAGCAGTGCAGCAGCAGAAGTATGAC
AAGATGTTTCGAAGTAGCGATGGAACAATTTCAACAAGTACCAATCTACGACTCCAAATT
CGAGAAAAAACACATCGGAAAATATAATCTAGCTCTAAAACAGTTTCCATAGTACTTTTT
TGTTAAAGGAGTTCTCCCCTGATTGTTCCATAGTACTCCCTCTGTAAAGAAATANNNNNN
NNNNNNNNNNNNNNNNNNNNNGATCTAAACGCTCTTATATTTATTTAAGGAGGGAGTAAC
AGTTTCCATAATACTAAGACACATAGTTCTGTTCTCTTGTTCAACCAGGTGCTTTCCAAA
TTTAATCATTTAAGAAACATTTATTTACATGCAATTACAGAGAGATAAGGGTGAACCTCT
GTCAATGGCCAAGAGAAGTTTCATGACTAACCTCAACATGAGAGCGAGACACAATGTCCT
CTCAAATGCATAGACAACGCGCCATGGATTCAACACACCTAGGATACATGGCAGACCTTT
CAAATATATAAATGTGCCAACAGTAAATTCACAAGACAAGAATCCAACTGAAAAAGCTGT
GTTGTTTACCCGCTATCATTTGAAGACCGTGTCCTGCATCCTTTTGAACACCTCTTGCAC
GGATGAAGGATCTATATCATATCTAACACCCTCACCACCATACTGCACAAAGAGGTACTC
TCTTGAAGACATTGGAGGGGGCAAAAGATCACATAGCTCCACCAGATCTTGAATAGGTGG
TAAGGGCATGTCCCTTTGGTTCAGTGAATGATACACATCTGCCAGAAGAAGCCACACGAG
ATCAGCATCCATACAGGCAAGTCCTGTCAATGCCCTTACAGCAGCTTCTCGCAAACCTAT
CAAACCACTATAAGCAATCCCTACCACAAGGCCACAGATCTTCTTCAACACACTTTCCAA
TGCAATAGCGCTCCTTTTGTGGGAAGATATTTCAGTGATCATGTCTAGGACTGCAATCTG
AATCTTTTGGCTGGATATCTCAGCCATAGGTTCCTCCGAGGTAAGTGAGGTATTCCTATA
TGGTAAAATAATTGCTTTTTCATCCATCAATGACAGCGTTCTCCGACGGAATGGAGACAA
GGCCAACAACCTCCAAATGATATATCCATCCTTATGAAACCGGCGCACAAAAAAATTACC
ACCAGATATTTGAATGGTTCTACCTATAACTTCTGTGCATCTTCTGACAGTAGGCTGCAA
AAACCATACTCCGGTCAGACCAGATATCGTATAGAACTCACACATTTTACAGTAAGACTG
GAAACAGGTAACTGAAACTTATCCAGTCTAGCAACTCATACACTCGATATTATCATGTCA
AAAGTAAATTCGAAATCCAAGTAGGTGATCGGAGATTCCAGATCCAGGCCAACAAATTCT
GTACAGGTTTCTAAATGCACAAACTAATATTGCAGATTATTTCATGCAGTTAATTGGAAT
TTCGTGTTTTTGTCAGTTGGAGAGAATATGTTCCATGACTACCAAATTATAAATCAATTT
AGCATTTAATGAAGGCAAAGAAAAGGTAATATACTACTACCTCCGATCGATAAAAAGTGT
TGCAATTTTGAAATAAACCCAGTTCAAAACTGGGACATATTTTGGATCGGAGGGAGTAAT
ATTAATAATCAGAAGTGTTGCTCTAAGTTAAATGGGTGCAGGTGCAACATCATTCATTGA
ACCGGGGTGATGTTCAGGGCATATTGTTCACGTATGTAAATAACATGAACTCAATTCATC
TGCATTAAGAATCAACACATACCCTCTGGAGCACATATAGAAAATCTGGTGGCACAAGAA
TATAATTGTGGTCAGTTTTACTTCAGAAGCAAAGTTGATCTCATAGAGGAGCGGGATTAT
AGATGAACCTGTTAGAGTATATATAATATAGCCATGTACCCTTTTGTATTTATCCCAATC
TATAAGGGGTTTCCTGCATATAGTCCATCACATGTACATGTATATATACCGGCATATGGC
CTCATGGGAATACAAGTTGC