morexGenes - Barley RNA-seq Database

Contig contig_62469

Source Contig contig_62469

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_62469 (5856 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_62469

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72832	1	152 bp	MLOC_72832.1	Available	Available	None
MLOC_72833	1	1387 bp	None	Available	Available	None
MLOC_72831	1	1931 bp	None	Available	Available	LOC_Os12g06520.1, FRAME:+1, EVALUE:3e-54, 13112.m00669 protein bZIP transcription factor domain containing protein, expressed

CDS Structure of MLOC_72832

CDS Structure of MLOC_72833

CDS Structure of MLOC_72831

Contig Sequence (5856 bp)

>contig_62469 5856 assembly3_WGSMorex_rbca.fasta
AACGATTTTTCGTCGACTCATTTAGGCTTTTTAAAATATTAGGGTATTTATAGAGCTCAT
AGGCGGTGGAGGAGGTGCCCGAGGACCCAACCCACAAACCAAGGCATAAGAGGAAGAGTT
TTTTCACTGTTCTAACCTTAATCTGAACAATAGCACAAAATGAACTCCGTACGAAACCAT
TTCACGATTTGACCCTTTTAGAAACGCCACACCCGTGGCGTTGCTTCTCCATATAGAAAC
GTCACTCTACCATGGTGTTTCTGCTCCACATTCACACGCCTAACTAGCTCGCGTTGCAGC
TCACATAGAAACGCCAGTGGGTCTGGCGTTGCTACCCAGGTGACAAACGTCATGTACCAT
GGCGTTGCTGGACTTGCATGGGTCAACGCATGCCTGCTGCACCTGCATGTGTTATGGTAG
CTGTGAGCTGTGATGTGAGCAGCAATACAAGAAATTCATGGCAGGCAGAGGCATACATGA
CAAGGATGTGATGTGAGCAGGCAGATGCAGTATAAGAAATTCGTGGCAGGCAGCTGTGAT
GTGAGAAGCAGTACAAGAAATTCGGGGCACGCATACCTGCTGCACCTGCATGCATTATGG
CAGGCAGAGGCAGGACCCCTACGACCCAATGCCCCACTCCTCGGCCACGCACACCATCAC
ACCGACCGCTGCGACGCAGCATTGCTTTAACCCCTCAACTTGAGCCTTTTCTTGCCCATC
CTGCCATCATGTCTAACTCTCTCTCCTACAGCTGCGCTCTGCGGAGCTAAAGCTAATTGT
ACTCGCAGAGTACCATAGGACCTCACTCGCATCGAGACCTGCCTGTTTTTCTCTATTTCC
TTCTTTCTTGCCGTGCGTTGACCCAGACCACATGCAGGTGCAACAGGTAGCAGGTATCGC
TGCCCAGCAACACCATGGTACATGGCGTTTGTCGCATGGTAGCAACGCCACACCCACTCG
CATTTGTATGTGAGCTCCAACGCAAGCTAGTTAGGCGTGTGAATGTGGAACAGAAACGTC
ACGGTAGACAGGAGTTGCTATGTGCAGCAGCAACGCCACGGGTTGTGACATTTCTAAAAG
GGTCAGATCGTGAAATAGTTTTTATACAAAATTCATTTTATGTTATAGTTTTAAATTAAG
GTGAGGACATTGAAAAAGTCCTAAGAGGAACGTCCTAGCGATTTGTACTTCCCGGTGGCC
GCACCGTACGCCAGGTCCACCCGGACACCCTTTTCCACCTCGCGTCCACACTTGAGGCTC
CCGATGAAGATTCTCTACAGCTCCTGGACTCTCCTCACCACTTTGGACCGTCCATTGCGC
CTCGCGATTTGTTCAGGCTGTGCACCGGGGGCACGCAGGGGAGCGCGGCACCACCCACGC
GGCCTGCCCCCATTTTCTCCTCACACGTATCTCACCAACTCGATCCCCCGAGCTCAAACA
CACACACACACACACACACACACACACAGCGCAACGCCTCCCAGCTCGACTCCACGCGCC
GCCGCCGCCGCCGCCGCCGCCGGCGTAGACCTCCCGTTGGCCGCCATGGACCCGCGCTTC
CAGCTTCCCACCCCGGTGCCGTCCTCCGGCGGCGCTGCCGTGCGAGGGCACCACCGGCGG
GCCCATTCGGAGACGTTTCTGCGCTTCCCCGACACCGACCTCTTCCTCGACCCCGATGGA
GACTTCTCCTTCTCCGACCTCGACTTCCCATCCCTCTCCGATGATTCCCCGGCGCTCTCC
GACCCAACCCCGCCTCCTCCGCCGCCGATGGCGGCCAGCTCGTCCCAGGCACCGGTTCCC
CGTCCACCAGGCGGGACCCACAACAGGAGCCTATCCCTTGACGCCGCCTTCTTCGAGGGC
CTCGCCTTGCAGGGGGGAGGAGGCGGACATAAGAGGAGTGGCTCCATGGATGGGGTGAAC
TCGCCGTTCGAAGGCGAGTCGGCGCTGTCGGGCGGGCCACTGGATTACGCCAAGAAGGCC
ATGCCGGCCGAGAGGATCGCCGAGCTAGCCCTCCTTGACCCCAAACGCGCAAAGAGGTGA
GGAAATAAATCTTCAGTTCTTCTTTCTCGATCCGGAAGGTGGTGTCATCTCATCTACTGA
TGTAATTTGTCATGTGAACCATATTTTTTTGGACCTGCTGACCCTATGGGAGATCATGCG
AGCAAATGCCGCAATCTGGAAGTGTTCCCTAAAAACCCACTCTGAGCAAACGCTCGAGAC
AATTGCCATGGTAAAACAGATATATTTGCCACGCTACTGTGTAAAGATTTGCCATGTTGT
AAAGATTTTTCTTACAATTCTAGCAGAAAGATTGTCAGGAATTTGCCATGCTGCAGCAGA
GTAATTGCCATGCGTTTTTTATGGATTTGCCATGATGCAACATGGGCAATTGCCAGCCTA
AAATAAAATAAAAATTTCAACTTAGTTCAAGATTTGCCATGCTGGCAGAAGAAAATTGCC
ATGCTACACCAAAGGGAAATGGTGAAACTTCCCATGCTCTAGAAATCAGAATTTTCCATC
CCGGATGTGTTCGTTCAAATTGCCATCCTGACCAAACTACCGTCAGGTCGTAGTTCGCTC
AGAGGGGCCGTGGGAGCGAAAAGTGATTGCCACGTGTCTTGCTTTGAAATTCGTACACAG
GAATTGAACGTGTCATAGCGTGTTCGCTCAAAACCCCTTTGAGCTGAGATCGTTAACATT
CTAGGTGTCTGCACATGTTTGTACTCCCCCTGTTCCATGTTTTAGCTCCAATTTGAACTA
AAACCACGGCAAGAACTATGGAACGGAGGGAAGTGATAATTTCTGCTACTGGAAGTGTGC
TATCAATTTTGAGATCTCGGATATCTGGATGATATTTGCAATGTTTAGGGTTCGTCTCCT
AGTTGTATTTGGGTTGTACTAATTTAGGATAATTGTATGTCTATGTGTAGAATTTTGGCA
AACCGGCAGTCGGCGGCGAGGTCGAAGGAGAGGAAGATCAAGTATACTGGTGAGCTAGAG
AGGAAGGTCCAGACACTTCAGACCGAGGCCACTACGCTATCAGCACAGCTTACACTTCTC
CAGGTATGGGGTTATTTTTTTAAGGGGTGTGAGATGAGCTTTTTTATGTAGTCCACTATG
TTCATTGGTCAATTGTCATGTTTGACATGTAGCATGACCCTAATAGAGTAACCAAAGTTG
GACTCATAATTTATCCTGTTCTGTGTTGAAGTAGATCGCTGATTGTATGTCTGCTGTATA
TACTTTATAGCATGTTATGGCATTCAATCCTTGCCATTGAATTTGAAGATGCTTAGGCCC
TGTTTGGAACCACTCAGATTATGATAATCCAGTTTTTATAATCTATATTGTCTCCAAACA
GGACAGCTTATGTTGTAGATTATAAAAACTAGATGGACAGATAATTTAAAACCCACAATC
TACTCTATCCCAGATAAAACCAGATTATGGATTGTTAATGACTCATTATCCTTGTAAAGT
TGGAGGTAATTACTAATTTCTGCCACCGCCACCCGCCTCCTTTTTTCTCCTCAGCGCGCG
CACAGGGCAGACAGGTCATTATGCAATGTAAAAACCTGGATTACAGTTTATATAATCTGG
CCTCCAAACGTGCCCACCTAGATTATTTTTATAAACCTGATTATATAATCTATCTTTATA
ATCCAGATTATCTTAATCTATTGTGGTTCCAAACAGGGCCTTAGTTGGGTGATCTGCAAC
TGAAGTTGTTGATTGCTCTGAGGCTTGAAACGAACTAATTTATGTTGGCATGTAACTATG
TTTTGTTGTGGGAGTTGTGTGGAAATGACACACATAGTACTGTTCAGCTTTTGATAATAG
TGTGAAGAATTTACATTTCTTATAAAAATGTTGTCATGGACACGCTTTATCATCAACATT
TACATTTTCTTACATTGTGATATATTGCATCGAGAACAGTTTATTGTAAGTATATAAGTC
GGTAGGACAGAATACATGTGTCGGTGTTTGGGTAAGACAGCTGATTTCTTTTATGCATAA
CATCATTATAATAAGTGAAAAAATTTGCGTTCGGAAAATGCTTTGTAAACTGAATTTGTA
TTAGCATTTCAAGTCTGTCTGGAAATTTTCATGGCAATTTGCATCAAGTATTAGCATGGA
GAGTATATAGAGTGTCGGGGCGCCATGGAAGAAATAAACTGTTGAATATGTTGCCTTTTG
TGGCACTCTCTTGTCACAGAGAGAACCAGAAGCTTGGTGCCACTTTATCCATCCGGCTTT
GATTCGATGGCTCACATCTTCACATCGACATCACCATCCTTTCTCAACATTGACCCCAAA
TATTGAAAGGTGTCCTGAGGTACCACCTGCCCATCATGGCTAACCTCATCCTCATGCCTA
GTAGTACTAAAACCGCACCTCATGGTACTCAGTTTTAGTTCTACTAAGCCTAAAACCTTC
GATTCCGAAGTTTTTTTTCCAAAGCTCTAACTTTTTATTAATCCGTGTCCGACTATCATC
AGCTAGCACCACATCGTCTGCAAAGAGCATACACCATGGGATATCTCCTTGTATATCCCT
TATGACATCATCCATCACCAAAGCAAAAAGATAAGGGCTCAAAGGTGGACCCTTGGTGCA
GTCCTATTTTAATCGGGAAGTCATCAGTATCGCCATCACTTGTTTGAACACTTACCATAA
CATCATCGTACATGTCCTTGATGACGGTAATGTACTTTGTTGAGCTTTTGTGTTTCTCCA
AGGCCCACCACATGACATTCCGCGGTATCTTATCCAAGTCAATGAACACCATATGCAGGT
CCTTCTTTTGCTCCCTGTATCTCTCCATAGATTGCCATACCTTGGATGATTTGGAAGCAT
AGTAACAATTAACTTTTCGATCGCGCGCAGCCGTGCGTCCACACTCGCGTGGGCAGGATC
AAAGCCGAGGCCAGGCTTTGGGCCACTTCTGGTGCCGAAGGGCTTAGGGTTGTGCTGCCA
GCCTCATGGGATGTGCACTAGTGGCCATCTGATTTGCGTAACCACCTCCTAGGAGGACTG
TAATTTCACAACNNTCTCTCTTTTCAATGAAATGAAACACAAAGGTCCATTGCGTTTTCC
CGAAAAAAAATAGATTGTCATACCAACAAAATGGCTTGCATAATCGACCTTCATGGTCAT
ACCAAACTGTTTTTTGTCATGCTTGTTATTCTTCCCAAGCAGTGCTCAGCGACTCTCTTC
CATAGCTTCATTGTTTGTCTCATCAGCTTAATCCACGATAGTAAGTACAACTTTGAACAT
TTCCCTTGTTCTTGAAGATTGGTACTAATATACTCCGTCTACATTCTTCTGGCACCTCGT
TCGCCCGAATAATGAGGTCGAAAAGCTTAGTTAGCCATACTATCGCTATGCCTCCGAGGC
CTCTTGACATGTCAATGGGGATACAGTCATGGCCTGTCTTCTTGCCTCCTTTCATCCTTT
TTAAAGCCTCTTTGACCTTAGACTCCTGGATTCGATGCACAAAACGCCTGTTGGTATCAT
CAAAGGAGTCGTCCAGCTCAATGGTAGAGCTCTTGTTCTCTCCATTGAACAAAAGGGCCA
CGGGCATGCCAATAAATAGCAACCATCAAACAGAGGCCAAAGTCGAGCACTACCACATTT
GGTGGTGTTCCTTTGGGTACACAGACCAAACACAACCCTAATGTTTCTGTTATTCACATA
CCTTTGGGGCTTTGCATAAGCATCTACCATTATTGATAAGACCTCTGTTAACTACTCCCT
CCGTCCGAAAATACTCGTCGCACAAATGGATACAAATGGATGTATCTAGAACTAAAATAC
ATCTAGGTACATTCATTCATATGACAAGTATTTCCG