morexGenes - Barley RNA-seq Database

Contig contig_62447
Source Contig contig_62447
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_62447 (8237 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_62447

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72822	6	2622 bp	MLOC_72822.6	Available	Available	LOC_Os05g35260.1, FRAME:+3, EVALUE:1e-88, 13105.m03685 protein PB1 domain containing protein, expressed
CDS Structure of MLOC_72822

Contig Sequence (8237 bp)

>contig_62447 8237 assembly3_WGSMorex_rbca.fasta
AGGGCATATTTCCAACACAAACTTCGGCGGTGTAGCGCTCAAGGGAGTGGCCGGAGGGGC
AACACAAGAGTGATGCAGTTCCATTTCCGCCGGAGTTGAGACCTATGGCGGCGGTGGTGG
GAAGAGCTCGCCTTGGGCATGATTTGAAAGTGGCTGATTTTTTTTCTTTTTCTGAGAATT
GATTGCGGCTGAGCAAATATGAGAGTTGGGTTGGTTTTGGGAGTTAACTTCTTCAGAATT
TTAGAAGTCAACTGCTTGAATGTTCGGCTAGCTGTGGTTAATTTGTCAAAATAGAAAAAA
ATAGGATTTACACCTAGCTAAGGCGCACTGGATACACTCGGATGTACGAGTACAGCTCCA
CTCGAGAGTGGTAACAACCCTATGTCTCGAGCCCTCAGGTTGATGTTTGCTTATGGGGTG
TGTGATAATATGGGATGTTGAACCCTTGTTCAGTAGTTCGGGAGTGGCTTATGTAGAGTG
TGCCACGACCAACCGGGCCTAATTACAAGGGTGAGTTAACTCTAATAACTACGAAAGTTA
CTAGTAACGATAGCTCTAACTCCGGCGTTACTGGTAACGCACGTCTTCACTATACTTCAT
GTGATAGTTTAAGTCTTTCGCCGTTGCAATCTCTTTGTAGCCCACGCCTTGTTGTAGTCC
GAGTGTTGGGGCGCATCCGATTGATACAAGATGATCTGAGTGACCTTGTGCAAACCGAGT
GAAGACATGCTTCTCTGAGTGAAGTTACGACTGCACCGATGGCTTTGGAAACACTTATGT
TCATGTAGGGTCTTGTACAACCTTGTCAGTGGCCATGGACCTCGGCAATGGCTACGACGA
CCAAACGAGCCTTGAGAGGAGGTGCATGGGTGGCTGGAGAAGAGCCACGATCCATTCAAT
GGGAAGGAGGCATCGATGTGGACGCCTTCTTCTTCACCGCCGCCTCGGTGAGGACCTTCT
TGGCCTTCATCGGGTTTCTTGCCCGCTTGGCACCAACCGGAGCAAGTGAAGGACCAACGT
CGAGCAGTCGTCGCCGCGGACGTCACGCCTTGCTACTGACCTTTGTTGACGGCACGACAG
TCCGTACCACATTCTTCGTCTTGAACCGCTTCATTAGCACAGGGGGTGGTGCATGGGTCA
AACTTCAGCGGTGTAGCGCTTAAAGGAGTAGCCGGAGGGGCAGCGCAAGAGTGATGTGAT
TCCATTCCCACCGGAGTTGAGACATATGGCGGCGGCGGTGGGAAGAGCTCGCCTTGGGCA
GGATTTGGAAGTGGCTGATTTTTTTTCTCTCGTGAGAATTGGTTGCGGTATGAGAGTTGG
GCTGGTTTTGGAGTTAACTTCTTCAAAGTTTTAGAAGTCAACTGGTTGAATGTTCTGCTA
TGCGTAGTTAATTTGTCAAAATAGAAGAAAAAAAGAGGAGTTACAGGTTTTTATGGGATA
TAGATGCTCTAAGAGCATCTCTAGCACACCCCGTATAATACTACGACTATATCCGGCGAC
CTATACGGGTTTGGGTTATTTTTTCTGTCACACAGTAGATACTGCAAACGCGGCACGGCC
TATAAAACTTTTGTAGTGACCCGTAAACGTGACCGCTCGAACGCTATTTCTACGGGTTCG
ACCGCTGGATGCGGGTCGAAACCATATCCCTCCGCCGCGGTGATGATGGAGCCGGAGGCC
GAGGCGGTGCCGCAGCGACCTGTTGGGGGTGTCGTTGAACCGGAGGATTTCCTTCCCCCG
GCGGAGGCGGATAGCTTGTTGCCCGCGCTGCTCGCGCGGAGTGCGCGGGTGTAACGCCCC
GGACACATCCGCCGATGGTCGGGGGCGTTACACCCCCGCCGACGATCGTTACTCCTGGCG
AGATCTAGACTGGCCTCACATATCAATATGATCGCTTAACTTGGGAGTTCTGTTGGAATG
GGCTCCCGGAAAAGAAGAAATTCCTTATTGATATGAGTAGTCTATCATCCCAAATAAGCC
AGGCTATCACAGCGGGAGGCGGAAGAGGACCAGCAGCGTCGCCGGAGGGAAGAGGAGGTC
GACACCGTGCTCTACGAGCAGGGTGTTGCGTCGGCGCTCGCCTTCGGCCACAAGCAGGAG
GAGTGGCACCGCGAAGCCACACTGCACAGGAGAGCATCTACGTCGAGCTCTCCTCCGACA
AGGACGACGACTGAGCGATGGGAGCATCTACTACCGCACGAGCTCGACTCCGGTGAGCTC
GGTTTTACGGAGTGAGGTAGGATAGTTGCTCCGATAGGATAGTTTATCTGTACCCACCTT
GTAGTATGTATGATCGTCTACTATGTAAAATAAACTATGAATGAAGTGTGTTTTTAATTT
CGCCCGCGAGTGCCTTTTTTAAATTATGGACCTTTTTTAAATTATAAAGTTAGATTATAC
GAGATCTGTTTTGCGGTGTAATATTTCGTTCCGCAAAACACAACTTCGACAGACTGTAAA
ATGATTTTACAGGTCATAAATATGCGGGGTATGCTAGAGATGCTCTACGACTAGAAACAC
AACTTCGACAGACTGTAAAATGATTTTACAGGTCATAAATATGCGGGGTATGCTAGAGAT
GCTCTACGACTAGAAAGGAGAAAGAAGTAGGGAAGCGGGAGGATGAGGAAGATGAGCAGA
GCAGAAGTTCGATGAGCAGAGCAGAAGTTCGATGTTTGCCAACAAAAAACGGTGGACAAT
TTGGTATAGTACACAAAAGAAACAGTTGAGGCATTCCAGGCAGAGAGCGCGGGCGGGTGA
AGAAATTTCGTTAATTCTCAGCCTGGATAACATTTCAACAACAAAACAGCCTACTAACAA
GGCCGCATGGATGTATCCATGTAATTTACATCTCAAGCAAGTTACTGCCTCCATCTCCAA
GGCCCCGAACCGCCGCGGAACCCTCAGTCCCATATCGTCGCCGCCTTCTTCGGCGTCTGC
ATCTCGCTGTACGGCGCCCCGCCGCTCCTGGTGACCGGCCGACCAGACCGGAGCGCTGGC
ACCATCGGCGCCGCCATGTAGCTGCCACCCCGGGCGTAACCCCCACGCGCGTCGTACCTG
CCGGCCACCGGCACAGGCACAGGCACAGGCGCTGGAGAGTACTGCGGCTGTGGGCTGCGG
TAGGGGTTGTAGTTGCCCTGCGAGAACATGTGACCGCCGCCCGGGTGCACCGGCGAGCTG
CTCATGTATCCAGCCAAGCCTCCGGGGCTGTCCCCGGCGTGGTCATGGAAGGCTTGCGGT
GCAGCATTCAGGCCGCCGAGGTTGGGCGAGCTCCGGACACGCTGCATCCCGCCGCGGAAC
ACGGCCTGCTCTACGATGTTGGCGCGCGGGGAGTTCCCCGCCGAGACGATGCCGTTGGGC
TGGTCCGGGTACGGCGGGCTTCCGTCAGGCGTGCCGGGCACCGAGGCCACGTAGCGCTCC
CGCTCCGGCTGGAGGTGGTGGTGCTGGTGATGGTAGTGCGGCTGGCTGCGCGCGTAGCTG
ACGTGGCGAGAAGACGGGACGGGGGCGGCGACGGCGGCGGAGACTTGGTGCGGCACGAAG
ACGTAGACGCGGAAACGGGGCGACGCGGACGGCGACCGCTTCGCCTCGAACCGGTCGTAC
TCGTCGAGCATGTGGCCCAGGTCCTCGTCGCAGGTGACGGACACGAGCACGTCGAGGTCG
TCGGAGGATAGCAGCTGGTACTTGATGGCCGCCACATCCGTCTTGAACATCTCCTCCACC
TTCTTCTTCAAATCTGCACGCGGGGGAGAGCAGATTTGAGCGCGCCGCGACATTGAAGCA
ACAAGAAACACACGCGCATCAACAAGGCATGGGTGGACGGACACGGCGTACGTACCGCGG
AAGCGGATGGAGCGGGGCACGGCGAGGACGCGGGTGTCGCCGCCAATGTACTTGAGCGCG
CCGTCGGACGGGCGGGGCATGATGCGGCCGCCGAAGCTGCAGAGTATCTTGAAGCGGACG
CTGGGTGCGCCTCCTCCTCCACCACCACCACCGCTGCTGACGCTGGTCGGGGAAAGGTGC
ACGTCGTCGTCGGTGGTCGCGCCGCCCTCGGACTCCGCGGTCATCGTCGGCATCGCGTGT
TCCATCTCTTGCTCGATCGAAGGCAAAGGGATATGCCGAGCACGCAAAGAATCTGCTGAG
TACTGAATGGACCTGCGCAAGAGCATTCGGCGCTTAAGTAGATGCCGCCACGTTTGGTCA
ATGCGCATAAAATCCGCCCCGAATTATCCAAGCGTGATGCTTGCCACTTTCCCATTCCGC
CATCTACAGTACATGAACCCATTTCTTGGTTCATCGGAGCAGGGTAGCCGAACACGAAGG
ATTGGCCACTAGAAGGGCCAAAAAAGAAAAAAGCAATCTTTCAAGAAAAAAGAAGATTCT
GAAAGCAAGTGGCGCACACTTTCCTCTGTCAAATCAAATATGCGGGCATGATACGTCCGA
TGAACGAAGGGAACAGAGATGTTTAGGCAGGCAAATCGCAATCAGTCGCAGTCATTAATT
AGAGACGAACAAACAACATGGCATGCCAGCCTTGCAAGTTACGGCCTTCCTTGCATCCAA
CCGCCACGCCATTATCCTCGGCGCGGCCACGAAAATAAATAAATGCAATTTTGTCCGGAT
CAAGGAGTCAGATAGGCGTCATCAAATCAAACCCACGAGTGGTAAACAATTCAAAAAAAA
AAATCAAATCAAACCTATCAGAATCAAATGGGGGGCGTAGAAACCGCCGGGCAGCCGATG
AACTAATGAAGATCCCAAATCGAAACTGGCAGAAGAAACAGTTATGAGCAGTAATCATGA
TGGGCGGAGAAACAGAGAAGGAAACTGGAGGGGAAGAAGAGAGAAGGAACCGAATGGTAA
GGTACTCACCGGAAGGGGGGAACCGAACTCTCTAAATCCAACCAACCGGGCGGCTTGTGG
AAGCGAAGAACGGGCGGCGGAGGAACTGGGAAATATTGTTGGGCTGGGACGGAATCAATC
AAGCTACTACTACTAGGCAGCGACGAAGGACGGAACGACGGGCGGATCCCCCGGCCACCC
ACCCACCCGGCGAGCGGAGAGGCCCGCTGCGCTGCTTTATTGGTGCGGGATCGACCGTCC
TCCCATCCGCGGGGAGGGCTGATCGACCTTCTTCCCTCTGCGAGGAGAGGAAGAGGGAAG
AGGGGATCGGGGGGGCGGGACGCAGGCAGGCGAGCGAGCGTGGCCGTGCCGCGGATAGGG
CGACGGGGGGTTGGATTTCAGGGCGGACCGGCCCCTGGATCTGAGGAGGCCGGCTATTCT
CGGGGGGTTCCGTCCGTCTGCGCCCGGCCCGCCCGCTCGCTCGCTGCTAAATCGTCTCCC
CCACCCTCGTGCCCGTGCCGGTGCCGCCTGGCTGTCGGTTAAGCAGAACCGTCGGGTCGC
CAAACTCCCGAGTCATCCCGCTCCGAATATTCGTCGACTTGGTTGCGTTGCGTGTTGGCA
TGTGCGACTCGGCCGACCCGATCGTCGCTCGCGGCCGTGCGTGCGTGCGTGCGCCCAACG
GACGGACGGGCGCGGGACGGATCGCGATCGCGATCGCGCGTCGGCGTACGGGCGTTCCGT
CCGGTGATTGGACTATGCGGTGACGATGAAGGGGAGGGGGACACGTCTCGGGCCCTAGGC
CGCTGCCACACGAGTAGTCGGTCGGACGTTTGTCCGGACTGCGGAGCGTGTGGTCGACGG
TGTGGACTGGCCAACTTGTCATCAACACGCCCAGCAGCCTATCGTTCCATGGCAGATGCC
GCTTCGATCGAATTGGCCCATGCGGAATATGTTCCTTTCTCTCCTTCATATCATAGTCAA
CTCCGCTCTCTTTTTTCGCCTACGGCTGTGGCAGCCCGGCGGGTGCTTCTTTTGTGTTGA
ATCAAAACCGAAAGGAGCGAGTAAATGATAGCTGTGTCATTCGCCTTAGATTTTTTTTTT
CGAAAAAAGGAAGATGCTATCATCTTATTAAAAAGTAATAACAAAGATTCGACAAAAGTG
CATAATTCAAAAGATTTCACAGGTCGAACTCATAATAACAAAAGTGAAATAGATGTCACA
TCTGGCTAAACGAGAAAAGTTACGATGACAAAACATTTATCCTGTTAGTCAGCCGACAAC
CAAACCAGTTAAAGATAGTTCGTGCTACCGTCTTTCACTAGTTGCATCCCAGTACTCAAA
AGCTTCATGTATTCAATAGTTGTGAGTAATAATCATGTACGGAACCATGTCATAGCTCTG
AAGATAGCCTGCAAAAAGTTGGTGAAGTTTTTCCTATTAAATATCACATGATTTGTGCAG
TTCCATATAGCCTAGAATAAATCACATATCCCTATCCCGGATATGACTCGCAATATTTGC
TTGCACTCTATTAATGCACGTCCCAAATAACATATTCATACTAATTGGAGGGTCAAAATG
TTAAAGGCTATATGTATAATACATCGTCAAAAACAACATCGGGTGTTCCCTACCCATCTT
CGCTTAATCAAATTGTCCTTTGTCACAATCACTCCCTTGTGAACGAACTATATAAATATT
TTAATTCTTAATGGAACTTTAACCTTCCACATGTGAATGGATGACGATAATGGCCTAGAA
TCAATAAGATCCAGATACATCTATTTCACGTAGGAAGTACCACTTGCACTTAATATTCAA
TGAATAGCATCTCATTGGTCACTGCGTTGAACTTCCATCAACCTATGGACCAAGTGCAAC
CATGAATTTCATCGTTCCCCAACCAAAGATCTTCTGAATTGTATATTTAGAGGGGTCAAT
TGTAATACCGTAGCAACATAGTATTCCTTACGTTGCACAATATTATAAAGGATAAAGGGT
AGGATACTATATAGCCAAGCGCATCTCCTCTAACCATGTATTATCCCAAAATCTAGTGGT
GTTGCCATTACTAACATTAAATTTCACCCTATGAGAAAAACTATCTTTCATTCTCCTTAG
CCCTTTTCAAAAAGGTGAATCAGAGGGTTTAAGTGCAACCTACATCAAAGTCTTAGATTG
TAGGTATTTATTGCAAAGAACTTGTACCCACATACCTTCCATCTCAATAGACAACCTGAA
GAGCCACTTGCTAAGAAGGCATTTATTTTTAATTTCTAAATACTCAATCCCTAACCTGCC
TTGCTCTTTGGGTCTACATATATTATCCCATCTCGCAAGCATGTACTTCTTCTTGGTATC
ATCACTTTGCGAGAAGAAACGAGAACGATAGAAATCAAAGGTATTAACTTTGTCGGTGGC
TTCAAATCTCAATAAGAGAGTTTGTGGGAAACTAGCTCAAGGGAAAAAAGAAGGATTAAA
AAGAAAAGCAGTAGCACAATCGATTGGGAAAGAAAGGCTAGAATTATAAATCCTGAAGAT
TATAGCATGCATGTCAAAAGAAGGATTTAACTCATGGTAAAAAGGAAGGAAGTACTATCA
TCGATTCGAAAATAATTAACTCATATCGTGTGAAGGGAGATGTTGCATGTCATTTTTTTA
ACGTCCACGTCTCGGCCTTGGGACACGTCCATGCCACATCGACATAACTTTACTACACCC
GTCCAGTTTATTAGGAGAACATAGAAACCGACTTTGTACTCGACTTCAAATCCAAACCTG
AGCCGATGGCGTGCGTCTTCATACATTAAGGAGAGAAATCGTGACTGACGATTCGCGACC
AACAATATGTATGTATACTGCAACAAGAGGTAATAGCACCAGGGGTACTAGAACTTGCAC
CGAATGTGACAGTTTAGTCCTAGAAGTTGCAAAGTGACCCTATCCAGTCCCAGAACTTGC
ACCTCATGTGCATACCCAGTCCACAACCAATAGGAGCTCGCCAATTGGACCGGGTGGGAC
CAGACGTGTCAGCTCTCGTCGTTTTGCACACAACCCCCTGCGTTTAAGCCAAATTAATTT
AGCTACACCACCAGCCAGCACCGGAATTAATTTAGCCCTCCTCCCAGCAGGAGATAGTTT
TCTTCTCCCCCCCCCAGCAGGCTCACACTCGTCGCCCCAGCCCCTCTTTGTTTCTCTTTT
CCCCCAGCAGGTTCATGTTGCCAGCATGGTATCCTGGAGTGACGGATCAATCTCCTCCTC
CTCAGACAACGACATCAGCAGTCCGATGAGCTCCTCTTCTTCTCCTCCTCCTGCATTTAG
GGTTCTGCAAAATGGGGATTTTCTAATCATATTCTCTCTTAGGCTCCTCCTACCATTTTG
TGCCTGGAATGGAGAGG