morexGenes - Barley RNA-seq Database

Contig contig_6236
Source Contig contig_6236
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_6236 (6618 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_6236

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72783	8	3983 bp	MLOC_72783.2	Available	Available	LOC_Os04g58420.1, FRAME:+1, EVALUE:4e-111, 13104.m06135 protein MLO domain containing protein, putative, expressed
MLOC_72784	1	858 bp	AK357958	Available	Available	None
CDS Structure of MLOC_72783

CDS Structure of MLOC_72784

Contig Sequence (6618 bp)

>contig_6236 6618 assembly3_WGSMorex_rbca.fasta
GGGGTGGGGGGGTGTGTGTGTGGGGTAGCACAACGCCTTTCGTTTAAGCGGGAGAGAAAG
GGTTTAATTAATTCTCCAACCGCTACACCGGACACGCACGTATCCTGTGTCAATCAGCAC
ATGGAGCAGTGACACTGACCCCTCGGAGCCCACCCCCGCGCCGGCCCCACGTGGCAGCCG
TGACACGTCAGCGTCTACGTAGCTCGCGTCGAGCCAGTCATGTGCCTGCCAGCCTCCCCG
CCCTCCCTCGTGCTCCTGTCAGAGCTCCCTGTACTTGCAGAAGCAGCGAGGAAGGAAGCA
GAGCCCCACCCCCGAATCTTCTTCCACCCCCGCATCATCCCATTTGTTTAGTTTAACTCC
AATGAGCAGCTAATGATTCATTCCATCCCCATGCGACCGAGCGAGCGAGATGACAAGACT
AGAGAAGAAGAAAGATTAGTGTAGTATAGTACAATAGGTGACAGTTGAGATCCCCTTTCA
ATCTGCTGGCACCTTCTTCTTCTTCTCCTTCCTGTGGAGCATTTTGTTGTTTCTCCACCT
CCCTTCTGCTTCTTCTTCCCCCCGCGCTCACCCTTGATGCCAGCCGTTGCCGTCATCCTC
CTGCCTCGGCCCGTCCGTCGACCAGCTCCCTTCCTAGCCAAGCTCTGAGCCGAGCATCCG
AAGGAAATCGATCCGCTCCTGCTCCTGCTCTGCATTCCGTCTCCACCGTTGGTCTTCTTC
TTCTTCTCCTCCTGCCGTCCGCGGCGCCATTGGGGAGAAGCGAGCGACAGCCTAAATATA
GGCCGCGTGGTCGCCACGACCGAGACAGCAAGAACAAGGTGGGCATCGTATTGCTGCTCC
TCCTCCAAGATCCCTATCCCCTTTCTCGCTCCCGGAGCTCCCCGTCGGAGGCCGGCCGGC
GACGCGATGCGCCGCGTAGCCGTTGCGCCCCGGCCCCTCCCTGACTGGTGAGCACTGAGC
AATGCGGCGGCGCGCGCCGGGTCTGGCAGAGGAATAGGAGGCGTCCGTCTGCCTGTCTCT
CCGGTGTCGGTGTTGGTCTTGGGTACGTACGCTCGCGCGGTACAGAAGAAGGTGGGAGCA
AGATGGCCGGCGGCGAGGGCGCCGGCGCGGGGGGCGGGACGGGGGAGATGCGGTCGCTGG
CGCTGACCCCCACCTGGTCCGTCGCCACCGTGCTCACCCTCCTCGTCGCCGCCTCCCTCA
TCGTCGAGCGCTCCATCCACCGCCTCAGCAACGTCAGTAACCCCCACTCTCTCTCTCTCT
CTGCCTGCAATATTTTCCTGTCCTGTTCTTCCCTTTTCCACCAAACACCAAACAGTTGGT
CCGAACCATTCCGAATAACAACCCAAACGGCTCATTTTTTTTCTCCGCTACGGAATTTCG
TCCTTCACTTACTTTCTTCTAGAAAAAGGGCACAAAATCCCTGTAGTATTACTTTTCCTA
CTACTGTACTCCGTGCACACTGAATCCCAAACAAAAATTACTCGATTTTAAAACACAAAT
GGGCAAAAAGGTTTTGCACGATCTCGTAAGCTTTTCTGGTGCAGCCTTGTTGTTCCCTGC
AGCGTTGCAATGAGAGATCATATGCTGAAAACAGCTCTGCAGCCGGCGCAAGCTTTAATC
CGATTCTCAATTTGCTCATTATCACTGGATGGGCTGACTCAATGTTGTTCTTGTGCTCTG
TTCAGTGGCTGAAGAAGACTCACCGGAACCCGCTCTACAAGGCAATGGAGAAGATGAAAG
AAGGTACGTACCCATCAATCTGTTGTTTGTCTGTTTGTCCCCTGTTCTGATTTATCTTCT
TCGACTGCTGCGTAACAGGGCTAATAAACGGTGCCTTGCTCTGTTTTGATGTAGAAATGA
TGCTGCTCGGCTTCATATCCCTGCTTTTAGCGGCGACGTCGAGGATCATCTCCGGTATCT
GCATCGACACCAAGTACTACAATAGCAGGTTCTCCCCGTGCACCAAAGAGGAGGTCGAGG
AGTCATTGAGCGCCGAGCACGCCCTGACCCGCAAGCGCAACCACGTAATCGATGCTATCC
TGCATCGTTCTCTCAGGAGGAACCTTAAGGCTCAGTACCATCAAGTTCAGGCTTGCCACG
AGGTGCGTTTGGAAAGCTTCCTTGAAATGGCTATAAACTTGTTTGGGAATCCTTTCGCTT
TCGGTAATTGTGGAAGCTCGTTTTGGTTGCAGGGCTTCGAGTCGTTTGTTTCGCATGAGG
GTCTGGAGCAGCTCCACCGCTTCATATTTGTCATGGCAGTAACCCATGTTACCTACAGTT
GCTTGACGATGTTGCTAGCCATACTCAAGGTTCTTGCCTTAGTATTTCCACCTTCGGTTG
TTATATTTGGATGGGAATGAATGTTAAATTGATGCTGCTTCCTGCATCCTATAATCCTGC
ATTGGTAAGTTCTGAATATCGTGCCTAATCTTTGGATGTTGGCAGGTCCATACATGGAGA
AAATGGGAAGATGAAGCATTTAGAGATAACCATGAATCTTTTTCCCGTGAGTGTACTTGT
CTTTACCCCTTCATCTTTCAGAACAAAGGACATAATACAATGCCGAAACACATCTAATTT
CATTATGCGAAGTAGATCTGTGAGCTTCTAAAAGTGAGAAACCATAATTTAAACAAAAGC
ATTTCAGAATGCGTAACTTAACAGAAGCGATTGAGGACAATGAAATCAGTATTAGCTTCT
TATATGGTCCCATCGAAAAAACAGATCCTGAGATAATATGTGTTACATGGTTTTGTTAGG
AAGATTTTAAGCATGTCTTTTATGCTTGCTTTAGCAGTTCATCTTGTCTGAATTTTGCAA
CCATGTTAATTCCTCTAAATAAATTTTTCTGATCCTATTTGTTTTATTTCCCTAAACAAA
TGTTTTGAAAATCTAGGCAGGAAAAACATTCTGATGCATCAAATACACCTTGGTTTTACT
TCTGTAACTGCAGCAAACATTGTCGTGGAGTTATTGGTGCCACTGTATACTTAGCCATGT
TGCCTTTAACCTCCATCTGATGGTTCCTCTTCTAATTTGCCTGTAAAACAGAGATTGCGT
ATGCATCAGCAACTAGAAGGCAACCACCAGCACTTACCAAATCCTCTTCATTCAGATTTT
GGAGTCAAAATAATGCTGTCATGTGGGTGGTATGTTGAGTAAAATAATTATTGTTGCTCA
TCTTAGGCATAAATTTCTTCTTTCATGTAACAGAGCTACTGTTTTTTCACTGTTATAGCC
ATCACCTAAGATTCTTGTTGTGTCATTATACAGTTTTGCTTCCTCGCACAATTTGGTCAA
TCTGTTGTTCGAGCTGACTACCTTATCCTCCGCAAGGGTTTCATAATGGTAAGATAGTTA
TCCTGGGCCATCTTTGGTAGAAATGCTCTTCCTGAAAGGCCGACACTCTGTTGATTTTTT
TTTTAAAAAATTTATACCTTTTGAGAAAGATATACACACTCGTGTCTGACTTAATAATAA
TTTCAGAACCACAATCTTCCACCAACATACGACTTCCACACTTACATGATACGTTCAATG
GAAGAGGAGTTTGAGAAGATTGTTGGAGTGAGGTTAGTGTGTCTGCGTGCTTGCCTGCTT
ATGAATGTTAACCGTGCTCTGTTTTTTTCCCCATTGGAGAAACCTTATCAGCTAACTTGA
TCCTTTGATGCAGTGGAGTACTGTGGGGCTTTGTTGTTGCTTTCATGCTATTTAATGTTG
ATGGTAAACTGTGAACTACTCTTCTTCCTACAGCTGATATATTTCTGTTTCCTCGTTTTA
TCTAATGTCAGACATGTCGATTTTGTTGCAGGATCTAACCTGTACTTTTGGATAGCCATC
CTCCCTGTTGCTGTAAGTCACAACCTGCTTCTTGTATATTTTCGACAATGTAGGTAGTTT
CACCTCAAATTTTGATGGTCTCAACTGGATTCAAATGCTCCGTAGCTTGTTCTTCTAGTC
GGTGCGAAACTGCAGCATATAATAGCGATTTTAACATCAGAGGGTGCAAAGCTGACTGCA
TTTGGACCAAGGATAAAGCCACGCGATGATCTCTTTTGGTTCAAGAAACCAAAGTTTCTC
CTGTGGCTGATTCATTTTGTTCTCTTCCAGGTAAACCTACAATGCTTATTAATGTGTGCT
CAAATGATAGAAATTAAGCGCCGACTTAAACTTATGCATGTGGTGGTTTAATAATTTCTG
CAGAATGCATTCGAGCTGGCTTCTTTCTTCTGGTTCTGGGTACCACTTCTTACTTGGCTG
CTAACAGTATTTACGGGAAATTCAGTTAAGAGGTGGTATGAGGTAATTAACATAGCTGTA
TCTTTTTGCTGCAGTGGCAATTTGGTTATGATTCATGCTTCATCAAAAACCACCTACTGG
TTTACTGCCGCCTTGTATTGGGGTAAGCAGTTCGTAGAAGTTATACTTAGTTTCTGTGTT
CCATTAATTTTCTCGTTTTTCGTCATTATGGTAAGCCACAATCTATAATTTCAGGTTTGC
TGGACAGTTTCTCTGCAGTTACAGTACGTTGCCTGTTTATGCGCTTGTCACACAGGTAAC
AGTCTATTCACATGCCATGCCACAACAACGTTTTAAAGTAGTTGAATGAATCATCAAGAT
ACCATTACGCATTTGGGGATGCATATGTTCCATGTTCCCATTTGCTGTTTCTCGATGAAA
ATATGGCTAAATACACTGTTGCTGGTACGACAACAGATGGGATCAAAGTACAAGGCTGCC
CTGATCCCCAACAGGATCAGAGAAACCATGCACGGGTGGGGCAAGGCCACGAGGAAGAAG
AGGAAGAAGCGGCGCGGTGACGATTCCACCATCCGCACGGAGACCAGCACTGTGTGCTCC
CTCGACTACGAGGACGAGGATGACGATGGCCATGGTCATTCCGATGATGCCACGACACCG
AGGTTGCCGCCATACCTCAAGATCGAGCTGCGGCCAATGCGGGGCGGCGGCGGCATTCCG
AGACCGGGCATGCTGAGCCACCATATTCCGACCGGTGGCAGCAACTGGACCCCCGGCGGC
AGCTCCCAGCACGCGTTGCTCCAGCGACAGGGCTCAGCCTCAGCCTCTGCGCCGTCATCA
CCTCCACCTAGCAGCCATGACCGCGGTGTCGTAAGGTCGGCGTCAATGCCGGGGATCGCT
TCCGTGGCAACGATAGCCTCGACGATAGGCCTTACCACCCCGCCGTCTCGTCTGAGCGAT
GCCAATTCATAGGACACTAGACTTTGTGTTACTTATACGATGATGACGACGATGACTGAT
GAGAGATAATGCTAGGATCATATCATAGATGAGAGAAATATATACTTCATTTTGTGGTCA
TATAAGATGGTGTATATAGAGACATATAGTGTTACATGATCAATTATAGTAGTGCGTGTC
ATCAGAACTTAGAGACTGTTTGGTTTAAAGAATTTCAAAGGACTTTATAGAGGAAAGTTA
ATCCAGCGTCAGCATTGATCTTGACAACATCTGCCCATGGTGCAATCCAAATAAGAAAGA
CAACACAATAAAAAAGGGTCAGTTGTGATAGCGTTCTTCCCAAATTACTAAACAGATCAT
CATCATCAACCATGACACAATCGCCCCCGCGTTGCTTCCTATTCCTTCACACCGACGTCA
AAAGGGAAAGGACACACATGTGCATCTAAAACTCATGCACTAGCCTTCGTCATGTGTGGC
TTTGATTACCGCTATATGTCTAATCAGTCATGTTTCGAGCCTCACTTGTACATATTATTA
AACTAGTGTGTAGTTCCTCCTGAGACCGAGTCGGTTTTAACCAGTCACCCGCCATGCACA
ATAACCCCTCACTTCTACATATTAAACTAGTGTGTAGCTCCTCAAGTGTTTGACACTCGT
TATTTTCACATTGAAAATTTGAAGCTGCTACAATAACCCCTTACTTTTCAGGGGAAAATG
ACATGGGTCATACTGGCTCGCACCATGAGGTGGCGGTCGAGTCTGTCATAATTCGACCCT
CACTTCTATTTATTAAACTAGTGCGTAGTTCCTCCTCTGACCGAGTCGGTTTTAACTATA
CACTTAAGGAAGTCGCCCGCCATGCACAACGTTTACAGCAGCCGTGGCCAGCCTCCATGC
TTCGAGTTTGGACACCTTCACGAGTCCGGTCCCGTTATTGAACACGAATACATGGCTATT
TTTGTTTTCGGCGTGCTCAGGGTACACCCGTGCTGTGATGCACGTCCTCCCCCCGCCTCC
AAAGCTCTCCACCACTGAATGGTCGATCTATTAATTTGTTGGGAGAAGGGAACAAAATCA
CAAGATGCTATTGCATCCGATGCATCTATTTTAAGCAAAGGATTGACGAAGAATTTAGAT
TAGTACCAATGTTCTAAGAGATATGCTCCTCCCGTGCTGCTCGATGTCTATGTCCACAAA
CCCTCCATACGGCGACTTGTACACCTTGTCTCTCCCACTCGATCTACTCATGTGTTGCAA
CACGAGGTTCAGGCGTTAAAACAAAGAAAAATATAGGGTTTGCAACAGCCGATAATTTCA
TCTGAAATAAGTTCTAATCGTACGGTACCTTGTGAGGTCGGTGCACATGAGAACTTTGTA
CTTTTGGTCGTGCCTGAA