morexGenes - Barley RNA-seq Database

Contig contig_62133
Source Contig contig_62133
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_62133 (5864 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_62133

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72682	2	1865 bp	MLOC_72682.1	Available	Available	LOC_Os12g30780.1, FRAME:-3, EVALUE:5e-36, 13112.m03136 protein retrotransposon protein, putative, unclassified
CDS Structure of MLOC_72682

Contig Sequence (5864 bp)

>contig_62133 5864 assembly3_WGSMorex_rbca.fasta
AAGGGATTGAAGGGGAACGGAGGGGATTCGGCTAAGCAAACCCCTCTTACCAAATGGGTG
CCCGAGGTTCTGTGGGGTTTCTGGCCCTCTTGGGGATTTTCCTCTCGAAACCTCCTGAAT
CCCTCCGTGCCAAACAAGGCCTTAGGGAGAAGTTGAGCTTTCAATTAGGCGCACGTATGA
CACGTTATTTGGTTGCCACCTGCATAAGGTGTTGTCACCACTTCATACTATTGGTGACCT
TACCACACAACAGTTTTACTCCTAGCTAGGAACCAAATTACGATTCATCCTAGATACTAT
CAAATAGGAGTACACATTATTGAGAGCCATATGGCTGAATAGGGAAAGGTTCATCATCGG
TGCAACTAGATGGAAGTCCATCCTCTTTGTATTCCTCTTCCTCTTCTACTGTTGAATGCA
GTTCTTCCTCTTCCTCTTCCTCTTCTCCTACCTCCACTTCTTCCTCTTCTTCTCTTGCTG
CTCTTGCTCTTCTTCTTCTTCAGATCCTTGTTTGGTCTCTTTTATCCCACATTGCATGTA
CCCACTCCATCCTTTTGTTTTTGAGGCTTCTTTGTCAAATGCCTCCACACCATGGTCGGA
GCTGACAACATCGTCAGCCGTCATATCTTCCTCCTGAGGCACGAGTTAATCACGGCCCCA
TTGAAGGATCCAGCTATGTAGAATGCAACAAGCGAGAACAAGCTTAACCTGAGTGGGGAA
AGTGTGGAGTGACTTCTGATCTAGGATCTTAAACATGTTATTCAGAGCTCCAAAGGCCCT
CTCAATAGTAACTCTAAGGCTGAAGTGTGTGAGATTGAACACCTCATGTGGAGTTTTAGG
ATAGTTCCTACCAAAGAACTCATTCAGATGGTACCTGGTTTTTCTGAAGGGTGGAAGAAG
ACTTGGGCGACATGCATAGCCAACATCTCCTAGGTAGAACTTGCCATCGGAGATGGTGAT
GCCATCAGGATGACTCATGATGTCACTGAGAATGTTAGTATCATGTGTTGACCCTTCCCA
GCCAGCCACCACATAGGTGAACTTCAGATCAAAGTCAACGGCAACAAGCACATTCTGGCT
TGTGTAGTGCTCCCTCCCCCTGTATGCTGCAGCTTGTGACCCCAACACACTCACAATGAC
ATGAGTACCATATATTGCCCCAATGCAATTCTGAAATGGAAATACAAGATTGTGTTAGGG
CTCACCTTGAACAATACAATCATATGAAGCCATAAAGTACATACTATCAGTGCTCAAGTT
GAAGTATGAATACCATCTTGAGCTAGCGTGAATCTTGTTAGGAGTTCGGACGGTTGGTGA
CTTGATCATCTCTCCTTTGAGATCCCCAACAACATGGAGCACTTGCTTGAAGTACCTTGA
GATGGTCTCCATTAATCTCCTCAACGTGTTGTGAATAACTCTGGACGTGTGGTTACGGCC
ACCAACATGGAGAAACATGGCCACTTGCTCCTCCACACTAGTGTGGATGCTGTCTTGTAG
CAGCCCCCTGCTCCTGAAGGTTTGGACAAGTCTAAAAAATGGTGTTCTTTTCATTCGAAG
TATTCACACGGCCTCTGTGTTGTTGCTGTTATAGATGTAGTTCAGGTTGGCAATCCTCTC
CTGCTTCTGCATAAGAATTAGAGCATAACTGATGACACGTCTCTCACCACGACGAACAAC
TCTTCAGTGCATGAACATGAGCCATGCATGAATCAAAACTATCAGTGTTGTTGCCTGAAC
TACTAGCCTCATATGTGCGTCCATAACCTAGTCGACATGGAGGGTCCATTGAGCAATGGG
GAAATCGATCCTAACAACCGACCTAATATAGGGGAGAGAGGGTATTTCTTACCAGCATCA
GAGACGGGGACGGCGAAGGAGGGGGGCATGGTTGAGTCAAGGACGACCTGACGGTGGCCA
ACAGGAAGGGAAGCACCAACTCCTACTGTCGGATAGTGATGTTGTCGCGTCCTCCACCTC
TACCGCCGGCGCCGCTAGTTGTGAGGCTACAGAAAATGTTTGTCCTAGAGGTAGTGCTGA
CCGGGTAAATGAGAAGGGGGGTGAGGCCAGATTTGGTGTCGTGTCGTCGTGCCCGATTTT
CATCTCCCACCATCCCCACTCATTTTTACAATACTCCCTCGTTTGTTAGCTTGCACATCA
CTCAGCATGACTCGCTGAAAACTGTCGATTCAAGAGTTTCAGCGAGTCAGACTCTGTTTT
AAGATTCGTGTGAGATGCGAGCCGGCCCACCCCGTATGCAACCAAACACAATTTTTTTTA
CCCAACTTGACTTGGTTGGGCCTAATGTGTCAAACAAACACGCCCATATAGCGAGACAGA
ACATACGCCTTGGATGGTCGATGGACGACTAAGATTTACTAGCAAATCCGTTAAACCACC
ACATTGCCTGTCCGATTCCTGAACAGATTGTGTTCCGTGTCATGTTCCCAGCGCCGACTG
CAGATCAGTTTCGGGCTGATGTACCTGTACGGCTGTACCTCCAGCCTCTATATAAACTAC
GTAGCGGTGACCAGCGATAGAACCAGCACAAGCTCGAACCGGTTATATATACGAGTATAT
ACTTAGATAACTAGATCGCTTGCCTCAACTCGCGTGCTTCGGGAGTTCCAAGCACTCCAT
GGCGTCGCAGAGGCGCTTCTCGCTGCCGGTGGCGCTCGTGTTCCTCCTCGTGCTGCTATT
CGTCGCCGGCGCAGGATTCAAGCTTCATCACAAGGACGACAGTCACCCGTCGGTGTCACG
AGCATCCGAGGATTCCATGTCCATGCCCCGCAAACTGTTGCGCGCAGTCGTCCGCCGAAC
GGAGGCACGAGAACCCGAGAAGCCGTCGTCGGGCGGCTCGGCACTGCCGAGGGGCATCGT
GCAAGCTACCTCCGACCTCGAGATGGTGTCCATGGTGGGCGACCCTGAGCAGCAGCAGCA
AGGCGGCGGCGGCGGCAGGCCGTCCAAGAGCCTGCTCGCGATCCCGGTGGGCGTCAAGAA
CAAGGCGGCCGTCGACAAGCTCGTCTCCAAGTTCCCCGCCGACCAGTTCACCGTGATGCT
GTTCCACTACGACGGCGCCGGGGAGGAGCAGTGGGGCGACCTCGAGTGGTCGCGCCGCGC
GGTGCACGTCTCGGCGCTGGGCCAGACCAAGTGGTGGTTCGCCAAGAGGTTCCTGCACCC
GGACGTCGTCGCCGGGTACGACTACGTCTTCCTCTGGGACGAGGACGTGGAGGTGGACGC
CTTCGACCCGCTCAGGTACCTCGACGCCGTCAGGAGAGAAGGGCTCGAGATATCGCAGCC
GGCGTTGGACCGCCGGTCGGAGATCCACCACGGCATCACCACCCGCGCGCTGCCGGGGCC
CGAAGGCGGCGGCGACGTGCACAGGCGGTTCTACAAGCCGGCGGCCGGGTGGGGAGCCGG
AGGGTGCGACGACAGCAGCACGGGGCCGCCGTGCGCGGGGTGGGTGGAGATCATGGTACC
GGTCTTCTCCCGCGCGGCGTGGCGCTGCAGCTGGGGCATGGTCCAGAACGACCTGGTGCA
CGCGTGGGGGCTCGACTACAAGCTCGGCTACTGCGCGCAGGGAGACAGGACGCTGAAGGT
CGGCGTCGTCGACAGCGAGTACGTCCTCCACAGGGGAGTTCCCACCCTCGGCGGCGCCGA
GGGCAAGGCCGCCGCGTTCCGGGTCGCCGTGAGGCGGCGATCGTTCGCCGAGATGCAGAT
ATTCAACAGGAGATGGAAGGAGGCCGCGGCGGACGACGCCTCCTGGACAGACCCTTACCC
GTAGCCGGCGATCACTAGTTTTTCTTTTTTATTTTCTCTTTTTAGCTGGGAATCTGTAGC
TAGCTCTGAAGTGTACATACATATACTGCCTTGTACATGATCACAAATTGTTATGTTAGA
GTAAAGCTTTGGTTCTTTCTTATTAACATAAAGTTGCGACAATAACCAAAGGGGTGTGTA
CTGAATTGGTGTCAAATACATTGAAATAGAAGCAACTATCATCAAGAAACAATGCACTAG
AAACCTAGATTGAGATTCTTCAATCGACTATCCTATGCTTGCGGGCAACACTGGACAAAT
CAAAATGTTCTGTAAACAATACAAGAAGGGTGCATTGACAAGAAGGGTGTAAAGTGTAAA
CAATCAACTATCCTTCGGTTTTCTGAAATTTGCATTCACATCGACAGTTCTGCTACTTTG
AGCTCTACCAAGTCGTTGTGACGAAAATGCAGCCATCTTGCATCAGCAGAGAGCATCAGG
CGAGGTCACAGCCGCGACCTTGACAACTGGTTCCTTGTGTTCTCTTGCTATTCGCAACTG
TTTTCCGCAGCTCGAACAACAGTGGTCATTTTATAACTTCCCAGATTAAGATGGCTTCAA
ACGAGTCTGCCGTTTTGCCTGAAACGCAAAGAAAAATGGCCAAACCGGATGAAGTTGTGA
AGTGAGACGACCAAAAGAAATGTCTACATAGGGATTACGATCAATGCACCTTTCCTCTTT
TTGATTTTTCAGTTTTCCAGCAGGGGAAGAGGCCATGACATCCTGGTGCTCCAGACTCGG
AGACCCTGCAAATTACATGTAGGTCAATCACAAAAAATGCTAACAATATGCATCATAATT
CGAAAAGGAGCATCTACTAGATGCAAGCTAAGTTGTGGATGATGCAGGAGAAGACTAGCA
AAAAATAATTTAACAAAACAGTACTTTGTCGAAACTGGAGGTAGAACAGAACGCTTCAGT
GTATGGCTGTAAACGAGCCAAGCTCTGAGTGAATACATCCCAGCTCGATCCGAGGTCGAT
TTACACTCTGAGCTTAGAAGTTAGCTCGGGCTAGGCTCGTCAAGAAAATTGCATTAAGTG
GAAGCTTGTGAGGCTGAATGCTACAACGCATGAGCAATCACGATGGGCTCGTGAATTCTT
GTGCTACGGCGCAGATAGAAAAGGCCGAATGAGTTGCATGGTCATTTGGACCTGAACTTC
CACGGCGCATGAAAAAACTTCATATGTGCCTCCACATGTTTTATTAGGTAGGGAGAACAG
GTGGGCTAGAACTACTGAGCAGGACAAGATCCTATGATATTTTGAAGGAAAGTTTTTTTT
TTTTTTTGAGAAAACGCAAAGGACCTTTGCATTTCATTTTATTGGAAAGATAGAGTTTGT
TTTACAGTCCTCCTAGGAGGCAGAATACAAGCATTCTAATGATACTTAGTGTACATCCCA
TGTCTGCGGTAGGATAACCCGAAGCCCGGCAGCACCAGCTCTTGCCCATAAGGTAGCCTC
CTCTTTAATTTTCGACAGAAGTGCAGCAATTGAGGGCTGTGCCCTGTCAAAAACACAGTC
ATTGCGGTGCTTCCATACCATCCAGGGCAGGAGCAGGGTGATGGATGCCAGCCTTTTTCT
CTATGGCTGGGGGGTGTTTTGTCGCGCGCGGTTCCACCAGTCCACCAGCAGAGTCCTCCT
GGTTTGGGCCTCCTACTGGCATCCGAAGCCACGCGAGGATCTCGTGCCAAATCAGTTGGG
TGAATGGGCATTCGATGATGATGTGGTGGATGGTCTCGAAGGCTTGGTCGCATAGAGGGC
ATCGTGGAGGGTGCTGCAGGCCGCGGCGGGCGAGTCGATCTGCGGTCCAGCATCTGTCCT
GCTGCGCATGCCAGAGGAAGAACTCCTTTGGCGGCGCCCATGCCTTCCATATCATCTTTC
AGGCAGGGCAGGTCACTGATCCATGGAACGTGGCGAGGTAGCCGGACTGTGCTGAGTAGG
TGCCCGTGGTGGTCCACTTCCATATCAGGCGGTCAGGCTCCTCGGTGAGGATGGTGTCCG
CGATCATCTGCCAGAGCTGAAGAAATTGCCCGACCTCGTGTATG