morexGenes - Barley RNA-seq Database

Contig contig_61991
Source Contig contig_61991
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_61991 (6990 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_61991

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72618	2	1123 bp	AK252168.1	Available	Available	None
MLOC_72617	2	979 bp	MLOC_72617.1	Available	Available	LOC_Os03g59750.1, FRAME:+3, EVALUE:5e-69, 13103.m06561 protein DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative, expressed
CDS Structure of MLOC_72618

CDS Structure of MLOC_72617

Contig Sequence (6990 bp)

>contig_61991 6990 assembly3_WGSMorex_rbca.fasta
TTGTCAAAGTACTCCCGCCATCTACGCTTGATCGCCTCATCCTTCACAAGAAGCTGATCA
TCTCCGTCCTTGATGCATTTGACTTCGCCGACATCCCTCGTCTTCCTCAAAATAAATAAA
ATATGAAAATACTTTTCGTGATGGATCTAATGATACAAATTTGGTACTGTAGATATTGAT
ATTTTTATCTAAAAACTTGGTCAAACATGCACATGTTTGACTTTTGAAAAAACTAATACA
CCTTTGGAACGGAGGGAGTATGATGAAAGAAATATGGGGGCTTATTTTGATTTCTCAAAA
TCACATGTTCACATATATTTGATAAATGATTGAGCTGAGCATGCCATTGTTCAGAATATC
AGTTCAAATACTGCTAGTGACTTTAAATGTTTCAGAAGTGACAAGCAATAATACTTGATT
TAAGTTCGCTAGGAACTATGGATCAGATGTTTCTTCTGTTCTTTTATTGTCTGTTTCTTG
TTAGCAATGATATTTCGTCTCCTTTGGATTTGTTTGCCTGCTTCTTCATGCGTACCGTTT
TTTTCTTCTTTGCCAATTCACTGACATTTATTCTTTATATTTAATTATATTTTTATTTGC
TCTACATCCCAGCTTCGTCCGCATGGAAGAACTACAAGAGGTATGGGTGCAATGAGGCTA
AAGGAAGATGACAAGATGGCAGCCATGGATATAATTCCATCCACAACCCATACAATGCCT
GGAAAAACTGTCAGCAGGTAGTTTGGCACCATTTTTTTTGAATTTCTAAAATCAGCTCGT
AATTAGCAAGACCAGATGGATGAAGTTCATCAAAATTTAACAGTTCAGTAAAATACGAAG
GAAGAAAATTTGTTCTTTTGAGAAAACCAATGCATTAGTTGTATTCAGTTTAGCATGTTT
CAATGCATTTAAAAAGTATCTTCTTTGACAATGCTTTTTGATGTGCCAACTGCCCAATAA
CTGACCAAATTATCTTTCAACTATTATGTATTCCAGGGTCAGAGACTTGAGTCCTCCATG
GCTGCTCTTCATAGCTGATAATGGTTATGGGAAGCGTGTGCCCCTAAATGCTTTCCGTCA
ATCAAGCTTCAATAGAGTAGGCTTGCGAGGCTACAAGGTATAGTAAAGTTTCTGATTTAC
CGCGTTCAGCGAATCGTTTTGTCTAGAGTACCTCGTATTGAATAAAATGTAAAGTACACA
TTGGAACTTGTACCTTCTGTTGTTGCTAAAATTTGTTACGCCTAAAAGATTCAAGTACAT
TTAACCTTCAGATGGGTACATCATTCATCTGAGCTTCATGGAGTTGTTGATAGTATATGC
TATTTTGGCTTGCAGCTTCCAGAAGATTGCCGCTTAGCTGCTGTGTTTGTCGTCGGGGAA
CCGACTGGTAACTTCTGCTGCAGTCCTTTTTTGTTGCCTAACCACAGATAAGATTTGTTT
TAACATGTTCATTTTTTGTGTGTACGAATCTAATGACAGATGACGATGCAAGTGACGAGC
AGGTTGTTTTAGTTAGCCATGGTGGCACTATAAACAGAATCAAGGTCAAAGATGTATCCA
TCCAGGGTCGTGGGGCAAAGTAATACTCCCTCTCTGTTTCTCTCTCTACGTTTATAATGC
AATCTTAATGCTTCTGCCTAGTATTTCAAAGCCCAGATGTTCCTTGTTTCAAGCTCTGTA
GTATTCAAGTTCTTCTCGCGCTCCCTTGAAGGTCTATTGTCAAACGTTACCTCTAGTTGT
GTCTACCTCATGCTCTGCGCTCGACACTTTGTGTTTACCTCATTACCTCCATATGTTTTA
GATCACTAATTACACTTGACACTAATTGCTCTGCTTGGTGTGCCACAGGGGAGTAATTCT
GATGAGGCTGGAGCATGCTGGGAAGATCCAGTCAGCTTCACTGATATCAGCTGCAGACGA
AGAAGAGATCTCGGAAGAATGATTCAACTTACATTACAAGATGGAAGAGGCTAGTAGGTC
CTGCTGGTTCGTGTTGCATCCCAAGCTGGGGAGAGCTGCAAATTTTGTTGTGTTGGGTGG
CTCATGCTGTTCTCCAGTAGAAGCTAGGAATCACTCTGTGATTCGGAGGGGTAGAACTCT
GGCTGCCATTAACGTGTGTAAAACTGATGTAGTCATCGTGCCATTAGCAGTCGATGTAAA
TCTTGCACGCTGGGTTGCAAAATTCGTTACTATGATCAGGGACCCCTTCGGTTATCAGTG
CTCCCGCCTCCGGCATCTATCCCACTTGGTGTTGAGTGATGGCCTTTTGTCGAGGTGTAA
TTCCGCATTCCATTAAGTAGTGGTATCGATGGAATCGTTGGCTACAGCGAGGGAGTAGTT
TGAAAGTCACGCAGAAATGGCCTTCGACCACAGCCCTAGCACCATGACTATCCAGCAAAT
GTTAGATTCCAGAGTAAGACGGTCCAGACTACCCATGCCAAAATCTTATCCGCTGCTGCA
AAAAGGCAGACCCCTCAGCAATGCAGCCCAGGCCCCATCACCTCTAGTTTCAGATGAAGC
TCCATAACAGGCACAAGGTGTGCATCCTCGTTTGCTCCGGCAAGTAATCCAGGTGGAGAT
CGGTCACACGGTAAGCTTGAATCTTCCTCGAAGTTATATTATCAAGTTCCACACCGCCGC
CTTGCGACATTTGTACGCCAAGGGTAATGTTCCGCTACATCCAATGCTGTGGGAGTGCTG
TACGCCAAGAGTTATATTATCCTAACTTTCTCCTTCCAATCCGCACCTGATTATCCTTTC
CCAGTGCTATGAAATCAGTATGAACTTTGTATGCCGACTTAGGTGAGAACCTTGGAGTTG
TAATGACAGACAGGCGACGTGAGGTTGTCATATTGCTCACACAAGGGACCTTTTCTCGCC
TTGCCATGTGATCTGCTCTTTCTGAGGTTTGCCTTTGAGCAGCTCCATGCATTTCCTGAT
CAAAGTAACGTGAAACGCATATCATACTACTTCGCCAAGGTCTACCATCTCACTCCAGGG
AGCGCATTCATCAGCCCCACCACCATGGCCATCACCTGTGGCATGGTGTGGTGTGAGTGT
GAGGTTGAAGAAGACCGCACTTACAACATTGTGTTCGCCCAGCCGAGTGCTATAAACAAA
TGCGCAAATAAAAGTGGAGCGGTGCTGAATATATACATGCATAGATAGATAGACAGATAG
ATGCTTGAACACTTATTACGAAATTGAACAGGACTCTCTTTAGCTGTTTACTTCAGAAAC
ATCTTAGGGCTCAAAATACAATAAAACAATAGTATGACAGTGAAACCACAGCCGGAGCTC
GGTAACTGTTGATCTCAGGAAAATACACAGTACATACGGGAATAGCATAGCACCATCCCA
TCCCAACACAATCCCTAGGTACCCGGTGATTGAATCATCCATCCAAAGCGCTCCTAGCTC
TTTCAAAATCTTGACGAAAATTTAGGACTGCAAGCACACGTTAAAATGGACGAGATTAAT
AGACCGACAAAGAAGCCTGTCATTAATTTTGCACATGGAGAAGAGGATGTTTTGCAGTCC
GCTGACAAGGAAAATCTAGGCATACCTTGTTGGCAATGTTGCTGGACAGCCAGTCCAGGC
CTTCATACAGTCCCTCCCCTGTTGTAGCACAAGTGCTCTGGATGTACCTGCAAACAAGAA
CAGCAATTCATCAAGTTGTCTGCTGTATTACCAAAGCAATATGCATTACCAAGCCAAATG
GCAGACAGGAATTTCATCTTCTTCACACAAACAAGAAATTATATGGGTTAGTTGGGGGGG
ATTGAGCCAGTTATAATGACACAAGGATGACAGTCATATCTATCTTAAAATACAGAAAAG
ACAAGCAAGGGAAGTCTGCGTATGGCTACCAGTGTCGCTGGCGAAGGGAGTGCAGGCCAA
GCTTATCAGTGATCTCAGCAGCATTCATGGCATTTGGAAGATCTTGCTTGTTAGCAAACA
CAAGCAGCACAGCATCACGTAACTCATCCTGCAGCCAGTGAACATGTGAACTGTGAGCAC
TCAAAATCACCAGGACAAAGTACAACAAGTATTGAAGATGGGACCCGTTGTAGAGTGTAA
GAATTTACCTCATTCAGCATCCTGTGGAGCTCATCCCTTGCTTCAACAACACGGTCCCTA
TCGTTGCTGTCAACAACAAAGATGAGACCCTGCGTGTTCTGGAAGTAATGCCTCCACAGT
GGCCTGATCTGTTTTTACAAACATGGCTAAACATTAGCCCCCATTTTAACAAAAAGATGT
GTGACAAATTCAGATAAGGAATATACGGGCCTATATTGTTCCATAGTAGATTAGAAATTT
GTGAGATACTAGTACATGATCCATGGCAGGTGGAGTACAAAATAATTCAGTTCAATGGTG
CAGAGTACGTTATCTATGTACCTTGTCCTGACCCCCGACATCCCAGACAGTGAAGCTGAT
GTTCTTGTACTCCACAGTTTCAACATTGAACCCTGTATTTGGAGGCAAGACACTTTTGAG
AAAAATAGAGAAAACATGTTGCAGATTAACAAACGTCCAAATCTGACCTTTAGTATATAA
CATAATTTGCATGAAAGAACAAGACAGTCTTGCCTTTTAGCGCAATCCATAAAATGCACA
CGAGGATATTATACTGGCAAATACTATCATCCAATGACATACGAAGCAAGCGGTCAATTT
TAAAAAGGCAATATTCAGTCAACTTCGGTGTGTTTTGAGATAGGGTAGCTAGCTGGTTGT
AGTGGCTTTTAATTACTCACTGGATGCTCCAAAACTGCGTGAGCGTTACTATCAATGACT
TCCTGTTGGCATATAGGCATTTGTTTGTTACTATCAATGACTTCCAGTTAGCATATAGGC
ATTTGTTTAAAGGGAAATTTGACCATACCAAAGTAACCAAAACTTCACAAAAGGACATCT
AGCTCAGGATCAATTTTCTTATGTTCACATGGTTAAAAAATATGGACCAACTGGTAAATC
TGAGACTTGTGTGTAGTTTTGTAAATATATCTCTATGAACAAAGGTGCACCAATCGTGAC
CTGTACAGAGATCCTAATGAACAGAAACTCCCTAAACATTGGTAGCTTCAAATTGATACT
GTAGCTGTTTTTTCTTGGCCAAACTTGTGTCTGAAAATAGCACCTGCCGGGATCACATTG
CCAAGCATTTGCATGTTCCGCTACAGATTCGCAACATAAGGAAAAAAAACTGGTATAAAT
AAATAGGCATGTATCACGCGATGCGCGCGCGGGATCGGTGCTCACCGATGGTGGGGATGG
TGGTGACGATCTCGCCGAGCTTGAGCTTGTAGAGGATGGTGGTCTTTCCGGCTGCGTCGA
GACCCACCATCAGGATCCGCATCTCCTTCTTGGCGAACAGGCGGCTGAACAGCTTGGTAA
ACGTGAGCCCCATCTCCTCTCCTCCCGCGTAGGTGCTCTTCCTCTCGGTTTGTCTCTCCT
GCAACACAGAATCACGATCCCCACGGGTCAGACGGAGTCCCATTTCGCTAGATCTACACG
CGGCGCGCCAGATCCGGGCCCCAACCGAACGGCCGCGGGATCACCGATCGCCATGCGCCC
GGCCCCGCGAACGGCGCGCCGGGCACGGGATCCGCGGGCGGATCCAGCGCGCGGCGAGGA
CACGTCGGTGCGGGATTGGGCATGGATCCCTACGAGATCTACCGAACCGGCGACCCGCTC
GGCGTGATCCACCGCCAGGACGGACGGATCTCGCGAATGGAGGAAGGGAGGGAGGGAGGG
AGATGGGGTGGATCCGGGGCGGGGGTCGCTCACCTGATCGGAGGAACCGCTCGATCCGCG
GTGGGTTCGCCGGCGCCGGAGCCGGAGAAGGGGGGCGGAAACAGGGGGTCGCGAGAGAGA
AGGGGGGAGAGAGTGGCCAGGCGTTGGGGCCTGCGGCGTCGTATTTAAGCGACGCGAGGG
AGGAGAGCCAGCGCTTTGTGTTGTACGGGTCGCGTCGGTTGAACGCGTCTCGCTCTATCG
ACACCTTTTCCATTGCCACAACAATTATTTTGCCATGGGATATCCACGATGGTAAGAGCA
TGTTCAATGATGTTATATGGATACAGATGTTTTATAATAAAATGTAGATTAAGGTATTTA
TATTGAAGATACCAGCAATGTGACTCATTAAAAAATAAAAATAAAGATTTTAATACACAT
GCATCTATACTTTTCATTCTAACTTTTTCAGTTTTTTACATCGGATCACATTTTTTCTCT
CCAAGCACTCGCCTAGTGCAAAGATCCCGCTTCTTTATTCGAACATACTTTTCCTGACAT
CCAATCCGATATGACATACGAGGCATCATCGTGAGACTATGCATTGTACATGCCCTAAGA
GCAAATGCAACACCCCGATCCAAACACACGACGATTTTGTCCGTTTTTTGTCCGTTTGGG
TCTGTCATTCGCTTGGTGTCCGCACAATTTAAGATTTGGATCGACGGTGCGTCCAACACC
CGCGACCCATTTTATATCCGCACACACATTTGAAAAGGCCCGCGGTCGTAGATCAAGCCT
ACGATCATGTCGTCGCCCAAAGTTCATGTCGACACCATGCCAGCGGCCGACATATAATGC
CAGCTTCAGAAAACACCACACAGTTCATGCTGGCGCGTTTGCCAGCGACTAACATACATG
CGAGCACACAAAAAGGGACGGGAGTTCGACCACGCCATCACGATCGTGGTCATGCGAGCA
CACTTGCCAACATACAAAAAGGATGGCGCTCGCCGCCATAGATATCACTCATCGTTGAAC
TTGAGCATGTCGGACTGCATCTTCTCGAACCACGGCCTCTTCCTTGGCGACACGGTGTTG
AGATCCACCTTCATGATCTCCACTCCCGTCATCATGCTAGCGAGTGCCACTTCTTTCGCC
TTGGTCTCGGCATTGGCGGCCTCGATCTCTAGCATCTTGGCTTGCTCCTCCGCCTCCATC
TCAAGCATCTTGGTTTGCTTCTCCGCCTCC