morexGenes - Barley RNA-seq Database

Contig contig_61954
Source Contig contig_61954
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_61954 (5929 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_61954

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72595	1	404 bp	AK367738	Available	Available	None
MLOC_72596	3	1097 bp	AK361271	Available	Available	None
CDS Structure of MLOC_72595

CDS Structure of MLOC_72596

Contig Sequence (5929 bp)

>contig_61954 5929 assembly3_WGSMorex_rbca.fasta
ACCTGAAATAATGCAAACATAGACACGCCATCAAATTCTGGAGAGGCTAAGCAAACTGAA
CTGAAATGCTTCAGAAATTGTAATCCTCTGTTTGGAAAAGAAAAAACCAAACCATTTTTG
GAATTCAGTCATGCTATAAGCAGAAGTCTAGCCTACCCCAACTTGTTTGNNNNNNNNGGC
TTTGTTGTTGTTGTTGTTGTATAAGCAGAAGTCTAGACCAAACAAGTTAAAAGAGAATCG
CCAAAGAGGTGTATTCAGATAATCAGCCAAGATCTACTAATCACATGATTGATTGCAGAT
GAAGTGAACAAGCAGGTCAGTTCTTAAGAGTATTTCTTGGTATGAGCTAAATATAGTGCC
ATACAAGACAAAATAAGCTGGCAGGTTTACATACAGAATTTGAACAATACAGACAGTGGA
GAATAATTACTCTGCAGCATATATAGTAAGTTACTGAGTACTCACCCATCTTTACTTTTT
GCCTCATAGAACTGGCGGAAGTGCATGCAGGCGAGCTTCACTTTCTGAGCGCCAACACTG
AAAAATGTCAAACAAACGCTGATCAGGAAATTAGAAAGTTCTAAAATCATGTAACTCCGC
GCATGTTGATACTTGATACACATAAGAAATGCCAAAAAATATGCTCAGAGCCTCGGTAGC
AAGTCATCAAATAAATGTTCACAAAAACGATGAAGTTATCCATCCCAGGCAATAAACCAT
TACACAAGACACTACTAAACTTGGCACTTCTACATATGGATATAGGGCAGGGCAAACGAC
GTGAACCGCGTGCCCATGCCGTGGACACCCAGCACCAACAAATCCAAATAGAAACAACAT
TGGTGCCATGGGCAGATCAGAAAAATCATTCATTGGAATTATGTAGAATAGCAGATCATT
AATACCAGAAATTTTGCAAAACTGCAAAACGACATCTATTCCCTTGCCAAGCTACAGTAA
TGCCATTGGCTAAATAGTATATCCCACAGCACCAGAAATGATCGCAAAATGACACATACA
CGCTTGAATAGAAACAACACTGATGCCATTGGTTGACAGACCAAAACATCACCATTGGGT
TACGTAGAATAGCAGATCAGTAACACCAGAACTGTTTGCAAACCGACAAAAAATTGTCAG
CGGCAGGAGCACACAGTTCCATTGCACGAAACACAGCTAAACTCGGCTCTCCTACTTATA
GCTATACGACAGCGGCAAACGACAGAAACCGCATCCCCATGACGTACACACACTGAACCA
ACATATCCGAATAGAACAACATCGATGCCGTAGGCAGACCAGAAAAACCAGCACTGCGTT
ACGCAGAACGGCAGATGATCAACACCAGAAATGCTCGCAAAACGACAGATCAGAAAAACC
AGCACTGCGTTACGCAGAACGGCAGATGATCAACACCAGAAATGCTCGCAAAACGACAGA
TCAGAAAAAACAGCACTGTGTTACGCAGAACAGCAGATGATCAACACCAGAAATGCTCGC
AAAACGACAGATCAGAAAAAACAGCACTGTGTTACGCAGAACAGCAGATGATCAACACCA
GAAATGTTTGCAAAACGACAGATATTTCCTCGCCGGGCCAGGATATTGCCATTGGCAGCA
ATACTGACAAATCATTTGCACCAATTGCGACTAAACTCAACTCTTCTATTTATGGCTACA
CGACAGCGCAAACGACACAGCGGCATGCACCGACACACCTGAATAGAAACAACATCGCAA
ACTCCGTTAAAGGGAACACAATTAAACGCAGATTTTTCTACTTATGGATATACGACAGCC
GCAAACGACACAAGCAGCATGCCCGTGACGGCACCAACACACCCGAATAGAAACAACATC
GATGCTGCGGGCAAACCAGAAAAACAGCCATTGGCTGTTCCGCGGAATACCGGATCATTA
TCACCGGAAAATGCTCGGAAAACAACAGATATTTCATGGCCGAGCCAGGATTTTGCCGTT
ACTGGCTGCAATACCGACAATTCCGTTGCGGGGCGAAATAAACTAACTCAACTCAGCACC
TCTAATTACAGCTACACGACACGCCAGAATCGCACGAAGATGGACGACGCAACAGAGAAC
CAGACACTATACAGTTAAAAATGAGCAGTGGAGAGGGGGGTAAGGCTTTTTGGCATGGTC
ACCTGGAGCTGCTCCCCTTGAGCTGGTGCACGTGCGCGTCCACCTTGTCGAAGTCCACGG
CGGGCTGGTCCCTGAACAAGCAGCAAAGGCAAAGGCAAAGGCAGACAGGATCAGCTCCCG
AGACGAGACGGCAGAAGCGGAGAGAGACGGTGGGCGTGGTGAAACGGACAGCAGGGCGGC
GATGTCGGCGATGATCCGGTCGGCGTCTTCGATGAAGAGGGTGGCGACCTCGGCGACGAA
GCCCGACGCGCTGCCCCCCTCCTCCAGCGACTGCAGCTGCTGGAACTGGTCGTCCACCAT
ACCCTAGATCGCAACCCCAGAGTCAGCCAGCCAGCCGAAACCGAAACCCAGAACACGACA
ATTCCAAACGGCGGCTAGATGGGGAGGCAGGAGAGGGGAGGGGGCTCACCGTGGCGAACA
TGGAGGCGAGGAGCGCGTTGAGCTGGGCCTGGAGCGCGTTGGCCGCCATGGCGAGGCGCG
TGGGGCTCCGATCCGGAGGTCCTGGGGTCCGCCGGGGCCGACACGGGGGCGCAGAGCACG
CGCGCGCGGGGCGGACGCCGGCGGAATTCGCGGCGGCGGCGGCGGCGTGGACGGGGACGG
GAGTAGGGTGGGGGGGAATGGATATGGACCGGACCGGACCCGACCCGTTATATGCTCGCG
TCGATTGTAAGCTGTGCCGTCCGACCGGCCGCGCCTTTTGATTTTTCCAGTTTTGGAAAA
GTTTTTCACCCTAGGCTATTTTCCCACCTTACTTACTTGGTGCTTCTTTTCCCCATTTGG
AAATTTTCAGAATCTTTCTTTTGGGTTCATCATGCTCTTCTCGATTACTCCTTCCGTCCA
AAAATATTTATCGAAAAAATAGATGTATCTAAACGTATTTTAGTTTTACTGCTTTTAACC
CGAAGAACATGCATGAGCATGATCATAATCCAGAACAAAACCTTCAACGACAAGGGCATG
ACGTGTAAGACCATGGAAGGACAAGCACTCGGACCTAGGGGTTTCACGGGGGTGGGGGCG
TGTAATTGTTCATTCTACGTTCACGCGTTGGTTCAACGGGCATGAGGTGAAGGAGAAGGT
ACGGCACGACAAACGTAAAGGGGAAGAGCTTGACGACGACACGTGATCTAGCTAGAGGGA
GGGATGGGTGGATCGGGAGGACGGCACCATGCCTCGCCCTAGTTGCAAGTGCTGGAATAA
AAGTAGGCATATCGAGTTGGCTACCGAATAAGAGGGAGGGCATGATGAAGAGGGAGATGG
CATTGGTGAAGAGGGGATGCGAGGCATAGGCTGGCCATAGTGGGGCTAACTTAGCTAATA
TCATGCACTTGGAACTAGCAAACACGCTGATATGACGGACAATTAAAGAAGAGAGAGAGA
GAGGGTTAGAGTAACATAAGTAGATATCGTATCATGCTAAATGATATGCTATTACTACTA
TGTTTCATGCATGCCAATAAATGAGATTATCTATGATACTATGCATTATAAATCTTCCTC
ATAAGCTTCATCAGGATCAGAAGAGACTGGCAAACGAAGTTACATGTGCACTGAATGTAG
CATTGATGTTTAGCTACACAGAAGGGCCACATGTATTGAGAAAATCTTGCCTCTTGATCA
TAACTCTGCACTAATGGAATAAGAACTTCCTTTCCCACCAATAAAAAATATAGGCGAAAT
TGATGACACATTGTAGGCAAAGGTTACCCCAGTATTCAAACCGACATAGAACATCTTAGA
ATGAAAATCCTTTTAACAAAAAAATTTATTGATATACACAAGACCTTTTAAGGTTCACCG
CCCGAAAAACATATCAATAAAACAGTTTTTATTTTCTTCATTCATTACAGGTACCTTGAA
AACACCATTTTTGATTGTACACAACTTTAAATGTACTTTTAACAAAGAACACAACAATGG
TCAAATTTCATATTTAGACACTGTCTTGCTGTCCAAGATCCTCATATATTCCCAAACAGA
GGAGCAACTAATAACAATGTGCACGGCAAAGCATCACCATCAACACGATGATTCCATGAA
TTTTATACTTGCTGCAATTAAAATATATTATCATGCCATAATCAGATCGGTCTCCAATGC
CGGGATATGCTCCCTGTTGGCCAGGGAGATCTGTCCACCACCATGATCCTCCTTTCGGTG
GAGCACATGATCCTCCTTGTCTCCATGCCTCTCTGTCCATCTGTCTCCATGCCTCTGCAA
ACCAATTTTTCTCTCCATGATTGCCACTCTAATCTCATTTCATTTGTTAAGGTGGTATGT
ATACATCGTCGTGGGAGCACATGCGGCCATGTTAAAATCACCACTAGGCTCTGTACTCGT
CGCCGCAGTCCCCGATGACCTCCATCAGGTTCCGGCCCCGCTGCGACGCCTCGGCGATGC
TGCCCATGTCCTCCTCGTCCAGCAGCAGCGACAGGATCGCGTTGGTGTCCCTGATGTGCT
CCGACAGCCCCAGCCTCACGCCCACCATCGAGCCCGCCACCGATGTCTGTCCACGAGGAA
GAATCACGGTGTCACCAGTCATGAGTTATGGTGAAATAATATCATCAGCAAAACAGAGAT
GAGATGGTAAATCTCGAGGCCAGTATGATGAAGATATTACTTTTTCCAGAGGGATTAGAA
TATGATGATGATGTGGAGGAGGAGGATGGAGGATTACCTGGTTCAGTATGTATCTTACGG
CGACGGTCGAGATTGGGACGCCGTGTTTCAGCGACACCTTCTTCAAGGTCTGGAGCAGAG
CCTGGAACAGGCTCCAGCCACCCCAAGCATCGATCATCTGCCATAGGATCAACAATGAGA
ACAGCAAGAGAAGACTGGAAGGTGGGCAACACATTCAACCGGAAAGATTACAAACTGCTC
ACTCTCTTGTACTTCTGCAGGGATGGGGTGTTCAGAGGAGGTGCAGCGAAAGGTATGTTG
ATGTTGGTGTCGAGGAACTTCTCAGACAATAGGCCACCCATCACCGTGCCGTACCTGCAT
CCAGGAACAATGCGTTTAAACTTCAAAATATGTTCTACTGAAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAAAAGGGATGGAGGGGAGGGCGCAGACGTGATAAGCTTGACTCCGGTAA
GCTCGCAAAGCTCTGCCATCTTTTTCTGCGGGCGCATATCCACAATAGAATGTTGAACCT
GGTAATTTCACGTCATCTCTTGTTATTTTATCGGAGGACCATATGATCATCGACGCTAGT
AGGGGAAAATACACAATACATGAGGCAAGTAAGGCAGTGATATATATATATATATACCTG
GTTGCTGACAATAGGTATTCCATTTTCTAGGATTATTTGCAGCCTCTCTGTGTCGAAGTT
CGTCAGAGCTACAGTCTTTATCTTGCCTTCAGAGTTCAGAATTTTCAGAACAAAAAGGGG
CATGATGTAAGAATTTATTCACACTGAAAAATCACAAGTGTACAAGATGAATGCACAAAT
GAAGTATTATTATCCAGTCAAGGTTTAAAATATTACCTTCCTCCTTCAGGTCTGTGATGT
GCTTTAGTGCATCTAGATATCCGGGATTTGCGTAGTCCCACCTGTTTTTGAATAAAGGGT
CCGCAAAAATTACCAGCTGTCGCAGTAGTTATATGATACATCCCCTAAACAAAGTACTTG
ACACGATAAACAATTCACAGGTTTTGAAGAAAATGACACTTCTCGCGTTTCGACAGTGCT
GACTGAATTCCTTCAAACTGGTCTCTCATGCAACACATCTAAGAGTAAT