Map Locations of contig_61834 (10115 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_61834

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72531 1 973 bp None Available Available None
MLOC_72532 3 3109 bp MLOC_72532.1 Available Available LOC_Os05g44210.1, FRAME:-2, EVALUE:0.0, 13105.m04666 protein trehalose-6-phosphate synthase, putative, expressed





CDS Structure of MLOC_72531






CDS Structure of MLOC_72532






Contig Sequence (10115 bp)

>contig_61834 10115 assembly3_WGSMorex_rbca.fasta
AAATAAAACAAATAGTTATAAAAGATANNATACCACATCCGAATCATAAACCGGAGAAGG
ACCGATGGGACAAATATCAAAATCATGGCACTATATATAACAAACAATCATACAAGTAAG
AAAATTATACAAGTAACNNNNNAAATCATACAAATAAGATTTTTTTACAAAAAGGATAAG
AACAAGAGGCTCACCAAGGCGGTGCCAGCGACGGACGGCACGGACGATCGACGGCGGTGA
GAATGGGGACGGGAAGACACTAAGTAAACCACACCTACACATATGCAAACTAAGAAGTTA
ATTTGAGCTGAAATTGCATATAAATCAAATAAAATCTCACATAATTACTCCCAAATTTAA
ACCCATAAATCACTATACTTATAGAGCATGAAACGAGCTAAACTAGCAATGAGAGATGAA
AGGATGAAGTTGCTAACCTTTTAGAACCCTTGAATAGATGGGGTGCCGCCAATTTTGATA
AATCTTGGCAAAAATGGAGGATCAACTCGAGCTTGGGGAAGGAAACAGAGAGGAGAGAAA
TCTTGGACTCAGGTTAGACGAAGCAACTTTATATAAGGAAGACTTTAGTCCCGATTGGAT
ATACCAAACGGGACTAAATGTCTATCTTTAGTCCCGGTTGGTGATACTAACCGGGACTAA
AAGGACTCGCAGGGCCCCCAGCTTGCCGTAACCCCTTTTATCCCAGTTGGTATCACCGAT
CGAGACTAGAGGTCCCATTTAAACTGGAACTAATCCTGGTCGTGCCCCCGTCTGCCCCTA
ACAGGGACTAATGCTAATGCTCACATTAGTCCCGGGCCCAAACCCAACCGGGACTAGAGC
TCTGGAAGAAAGGTCTGTTTTCTACTAGTGATGTTTCCTAGCCGCACTCAAATGCCTCCA
TTAAATCCGCATGTGTGCCAATAAATAAACACAACGTCGGACAAGCTCCTCGCGCCCTCC
GCTATTTAAAGGAGGCCAAACGGAGGAAAAGAATCACACCACTCCTCGACTCTCCATATC
CTCATTCCATCAGTTTCTTCGCCCTTTCAATGGGATCTCACAAATAGGAGGAGTAGTTCT
CCGGTATAAAAGTCGGTTGGGTAGCCCGACGAGCCCGCTCGATACGAGCGAGGCAACTTG
CGGCTCCATCTTCCTCACCTAGCCCGATGGAGCAAGTTTCCGCTCCATGTCAGCGCGTGG
TTCAGCAACTCACCGCTCCAAGCCATCTCACAGAGGAGTGGCAAATTGCTCCACACAAGC
ACACGATGGAGCACGGTGGAGCGTGCATCGTGGCTGGCATGGACGAGGCCAGGCGGCGTG
TCATCCGCCGTCACCATTGGCGGAACCGCGCCCGGTCGATGGAGAAAGAAGTTGGCAACA
CGGAGCTCGACGAGTCGATAGTCACCGTGTCCGCGTCTGCCGCCAACACCGAGAAAGTGT
AGAAGATGGGAGGTCGTCGCCGCTTTGGTCCCAAGATGGCCACCGGAGGCGAGTCGCCGA
CATCCACAGCCGGTGTCTCGTCCTCTCTCGTAGGCCGTCGTCATCCTCCACCCAAAAACA
AACAGGGATCCGCGCTTCGCGTAAGCGGATGCAACCAGTTCCCTCCGGCAAAAGCACCCC
CTTTACCACTCCGACGAGCGGCGCAACTAGACATAGGGAACTTATGAGGGAGAGATGTAT
CTCCGTGGCTCCGAGCAGTCTCACGAGCAGGCTGCCAGACATGGGAAAGACAAAGGGATT
GGCCGCTCCGACCGTACACTTGTGTAGCATATCTGTATTGTGAGAATGAAGCTTCGCACG
ATCGAAGGTGCACATAGTTTTATCTTTTTAATTAAAATATGTTTACAATGTAAATGTTTA
TGTATGAAATTTGATGTGTTTACATGAATTTTAAATTGTTGTTGACATGTACGTGAACAA
TGTTGGATGGCGGCCTCCGGCATTTATATATGTAGATTGGTCCCCTGTCCGTGGAGAGAT
GTTGGGAGAAATTTGCAGGCCGTCCTTGAAGATGCCCTAGTATTTCAAGGTTCAAGGTTC
ATTTACGTGTTCGAACGAGTTTAAGGTTCAGAATTGTTCAATCGCGTTCGTCTGGGAGGA
AGGGGTTTCCAAGCTGACAGATAGATACATCCATCCATCTACTTGCGCATAAATATACGA
TTGACAGACAGCGGCATGTATGCTTCTCTTTTTTTTCTTTGCGATCAGGCATGTATGCTT
CTCATGCCTAATGCATGCCCTGGCGGTTTGTTGGCCCTGCAACTTGCATTGCAGCTTGCA
AGGTCGTCGTCTTTGCTCTTCAAGAAAAAGATGGAGACGCGAAAAGGTCAGCGGATACGA
TCGCCCAAGCCCTGCGAAAAGGTATCCACGGATTTGGTGCGCTTTGAGAGCTAGTTCGTG
CACATTGCACGTGCACCCGAGCAAGAAAAGGACACATTCCCACCTTGACAGTACTATGAT
TTCTACTAACACCTATCCTGTAATTCGGAAAATTTGATCACAATTACAACACCTCGTTTT
TCCAGAGCAAATTTGTGGGGAAAATGGAGCAAAAATGGCGATGGGCTGAGCAGGAGCTCA
ATCCATTCCTATCGATCGACGGTGCACCAGCAGGGCCCTCGGGCGGCAACGGCGAGCAGC
GGCAGCTCGGGTAGGGATATCGATCGGAGACGACACCAAGGGCGCTCTCCACGATCCACG
GGTACCCCCAGCAGCGGACACGGCACGGCCACGGCGGTGGCCGGCGGCAGCACCACCTTG
GTCGCAGCGGAGCCACCAGAGTTCCTCTCCGCCGGCACCGCGCTCCCGCGTCGCGTAGCC
GTCGTCCGGCCACAGCACGTCCGCCTCGAGGAACTCCTCCGTCATGTCGCCGCCGCCGGC
ATGCCCGCCGGCGAAGGTGGAAGGGTCGGAGAGGAATCCGCCGGAGGAGCCGGGACCGAG
CGGCATCACGCTCGACGACGACGACGACGACATGGAGCTCGTGGACGAGGACGCGGCAGG
GCGGTCGTCGTCGGTGGCGAACGACTCGCACGAGAACTCGGCGGCAGCGGCGGACTCCGG
CAGGCGGCTGCCGTGGTCCGTCGACGGTGGCGTGTCGGGCCACAGCACGTCGGCCTCCTG
GAGCTCCTCCATGGGTGCAGTTCAGGCTAGGAACAAATCTATTTGTGATAGCTGGAGGCT
GTGCCATCCTTGTACTTACATGGGAATGGATGGCGCGAACCGCGTTGCCGTGACGTAGGG
GGCACTCTTGGGCTGTGATTAAATCTGGATTAATTGCCCAGCGCTCTGCTAAATGACAGA
GTAGTGTATCCAAGTACGTGACGTCTCACTCCTGCTGTTCTGTTTAATGCCGACTTTAAC
TATCGAATTATATGTGCTGGTTTGTGTTAGCCACGAAATGCCAAGTCATATTCAACAGCA
AGCCATGCGGTGCTTGTGAAAGAAACAAGGCGATCGATATATGTCAGTGAAAACGATTTT
TGCAGAAACATATCATTCCGTATCTGCTTCTAGGACAAGAGATGGGGAATAGAATAGGTT
GATGATGGAGTGACGGAAGCAAGCGTGCATAAGAAACGGCAAATTGGCTTAATCCGGTGG
GCAACCAATCATTCGTGAGCTGATATGATGCTTGACCGGGCAACGCGGACAAGGCGGGAT
GCGGTTAGGGAGCCCCACACAGCAAGTCATCCTCCCAGCTGGATGGCCACGGCTCACGCC
TGCATGGAGTATGCAACTAGTTTTATTTGCCTACTACAGTATGCAATTAGATTCCGTCAG
GAGCTAGCTGCACCTGACCCTTCAGTCTCACATCACTCCAAGACTTTCGCGAATGAGATT
AGTTTAGATATTTGGGAGGATTAATTAGGGTCAAAGTAACTACGCAAATGCAGTTTAAAA
CTGACGTACTTACCTATGTGGCCACAGTGCAATTGGATAATGAATCGAAATTAGTGGCGA
CAAACGACAAAATCCAAAACCAGTCGAATGAAAAGTCAAGAGCAGAAGCGCAGAACTTCC
AGAAACCAGAACTCAAAAAAAAAAAAATGACCATCAATACTGAGATTAATCATCACAATG
ATAAATATCCATCAATTTCATCTAAGACAAAACTCTCCAGGTCACACAGTCAAGGAGCGC
CAAAGCCTTCCTCTCGTTTGCTGCGAGAACCTCTCGCAGTAATACCAGGAGCTCAATTAT
ACTTTGTACAGGATTGTACACCACGCCGCGCCGGCCAGACAGCCACGGCGGCTACTCCGG
CGCGCGTAAAATGTTATTCCGCGCTATTGTTAACTCTTCTCCGGTGGGCCGCCGGGCCGG
TGATGATTAGTAGAGAAAAGAAACTTGGCTTACTGCCTATCCAAGAACATGTAATCAGCG
GCGGCGCCAGGCTGGAGGCCAGCGGCGCGGGGCGTCGTCGACTCTGCCATCTCCTTGAGG
AAGGAGACGACGTCCTCCGACGAGTTGAGCAGGTAACGGGCGTTGGAGCGCTTCCTACCG
ACGGCACAGGAGAAGTAGTTGTCGCCGTTGAGGTCCAGCACCGAGGACCCTTCGCGCCAG
TCGTGTTGGTTGTTGTTGTTTCCCATGCCGTGGTCGGACGACGAGGATGACCTCTCCGGC
GGTGGCTGCGGCAGCGGCGCAGCCTGAGGTTTCGGTGTCCTGGCCTGCGAGTTCCTGGAG
CCGCTCCGGCCATTGGATGGCCGCCCGTTCTGCCTCCTGTCGACGGATACCGAGGCACCA
TCCGGTTTTACCTTTGATTCAGAAGAAGGGTATTCGGGGTCGAAAAACACATAGATGTCC
TCGTCCTGAAAAAATAACATAGGATGTTAGCAGGGAAACTAGTATATCCATCGAGTAATG
CTACACCTACAAAGACTTACGTAAAGATTTTACGTATAAACTGATGTGTAAGATTGTGAT
TGGTAATTGAGGGATGAGNNNNNCCACCCCCACTGAAAATCAGGGGGGAAGAGAAGAGTT
AGTTTGGAAGGTTAAGTAAATATTTGTAAGTTTTTGTATGTCTAGCATTATTGTATATCC
ATCACTACATACCCGCATCTATAGTTCTATACGGTGCAGGAACAACGTGAATAAACTAAA
CAAGCGAATTTCCGCAGGATTCCAAATGCATGTATACATTGTCCAAATTGAACTTCTTGA
ATTTATCAATAAAACCCAAGCTAATTTCCGCAGGATTCCAAATGCATGTAAACTCCTTGT
ATCGATGTCCTTCAATTTCCCGTCGTCTAGTCACTAACTCACTATACAATGTGGTTGAAA
CTTTCTTCACCAAAAACACTACATGTTTGTATTGTTGGGTCATTCGGTACAAAAAGAAAT
GATACGTATCTTAGAAACTCTATATCTTTCATTAATCATACGTATAAAATTTCTTAATTA
TCCTACTGTCACACACACTGGAGGCTGAACTAGAAAGGAATGCGAGAACATAAAGTCAGT
GCAGAAAATTACCTTTCCAAGGAAGTGGCCTATACATAGTACATAGTCAATCGGGGTAAC
CATGCTTTTGCTGTGAACTATCTCTCCTAGAATACGATCAATTGCAGCACCCTACAGAAC
GAAAATGAATAATTGGTTAAAAGAATCAGTTAGCTAAATAACATGAAAAGCTTTCACTAT
GTTGAAAAATCACACTGCCTAACTGACCTTTGTAACTCCAACAGAGCGAACTTCAACTGA
CCGGCTCCCTTGAACAACATCGACAGCTGCATTTGAGATTGGACCGGTCCACAAGTGCTG
CAGCATATCTCTAGCTTGGAGCCTCCCAAACTCAACATCTTCACAACAGGCAAGTGCAAA
TAGTATTGGACGTTTTTGTTATTCACAAAATAAAAAAAAACTAAGCATGAACACCTCATC
ACTTACCAGCATACTTGTAATTCCACACAAATGATGTCTCGCGATGTTCAAAATGGGACC
TTGGGGTTCTTTCTGTGAAGTACTCAAAAACATGCTAGAAAAGGGTAAATGGTGTGAGAA
GGTACACATTAAGGGTTACAGCATTAACGTTGTTCATCAAACAGACATACCTTTACACTG
TCAACCCAATCCATGTTCAGATGTTCAGGCATTGTTGTCATCCATTCTCCATCAGTTGGG
CGCAAGAACATCCCATGCTCTGCTGCCAGCCACAAGTTAAATTCTCCGAAATTCTGCAAA
GGGGAGGATATGTTGATTTCAATACCAGATAAATAATTACAGAACACAAAATGACAGGAG
TCGTAATATTACTTCATCAAGCACACTCCTGTCGCTTCCACTGAGAACGATAACTGTAGT
GCTCTCGTCCTCGCAGAGGGCCCTCAGAGGACCCTTTAAGTCAGGACGCAACTTGAGTTC
CATCTCCTTGATTTGATCACCACCCCTTCTCCCAGAGGATTCAACTGGCTCGGTCAACGT
TGAATTGAAACCCTATATTCAGTCATAGGTGCAGCAACAGAAATTGTAAGGTCATTCTGT
TTTGTTGGAGTGCTAAGTTCATTGGGCTATGAAAGAAAAACTATACATATTTGCTGATGA
TATTCATTTAGTTCTAAAAAATGCAAGGTAAATAAATGAACTAATGTGGTAACATCTCAC
CATGTGGAGAAGTTATTGCCCAAGAGTAAACAAGCAGTTTTTGCATTATAAAACCTAATG
ATTACCAGTATAAACAACTTATCAATAGAAAAGAAAAAATATGGTATTTACCAATATGAG
CAAACGATTTTTTGACTGCAGATATTTCTGGATAGCCGTTCGACTAGGAAGATCAGGAGG
AACTTGTCTTGTTCTCATCAGAGCTTCAGCAACTGTATCGTTTAGCTCACTACATGAAAA
GACACAGTGTGATTACGAGAAAGTCTGGCAGCAGCTAACAAAATTACATTTACAATGAGA
AGGAAACAGCTAATCTACTAGTATATTCTGGTTAATAGAAGTACAAAAGAGACAAAGTGG
AAACGAGCTCCTCACCATACAAAAGTTTCAGCCCAATCTTGGGCGGTATGAGTTGTTACA
TGCGCGTAGTTATGCCTGTGCCGCTTCTCTCTCTCATCAGATGTCATTGTCAAAGCATGT
TTTATTGAGTCTGCAACTTCTGTAATGTTCCAGGGATTTACAAGAATGGCACCAGCGCCA
AGAGATTGTGCTGCACCGGCAAACTGAAATTGCAGTGGCAGAACTTATGAACCAAAATCA
GATATATTTTCAAGAGAGTGTGCAAAAGAAAATATAGACAGACACATATGAATACCTTGC
AGGCTAGATTTAAAATCAACTGACATTATTAATCATCATAGCTGATCACTTACCTCACTC
AATATCAGAACTCCTTTTTTTGATCCCTGGCATGCAACATATTCATAGCTTACAAGATTC
ATTCCATCTCTCAGTGATGTTACAAGAGCCACATCTAAGCAAAACAGAGGAAATACACAG
CTCAACCATGATAAAAGCAACAAGATTTTGAACAGAAGAGTGCTAATTAAGTCCAACTTC
AAATATCAAGTGAGCTGCCAGAAATTACCAGTAACTGCATAAAGAGCACACAAGGCATGG
AAATCAAGAGATCGATCCTGCAAGGAGCAAATTATTTTAGATGAAACAAAACAGTTTGCC
TCAGAGCATTTCACACATGGAAGTTTTTTGTTTTGAATAAAAGGGGTTCCCCCCCTGCTC
CACTTTTATTCACACATGGAAGTTAGGTCATAAGTTAGCACAAAGAGCTATTTAAAAGCT
GACCAGATGATGAATAGGAACAGCAGTCAATGTTCCAAATCGTCCATTTATGCGCCCAAC
AATTTCATGCACTTGGCTTGTAAGCTTCTGATCTGCTCGAGAAACATGGAAGTGCTATAA
GAACAACAACTAAATCTATATTGTTTAGGAGGAACGATACTTTAAAAAGGGACAGCAAGC
TGATAAATTGAAAACCACGCATGTGAACAATCGTATCTCAAACATCTGATGCAATATATA
TGCAGAGTGATAACGACAGGATACAGAAATGCGCTTACACTCAGGGACATCTGTTCTAGT
TGGTACGGCAATTTGAAGTAGAACGACTTTATCATTCCATTCAGGGTTTTCCTCAAGAAA
TTTTTCAAAGGCCAAAATCTTTTGTGGAATTCCTTTGATCATGTCAAGTCGATCAACACC
AAGCATTACCTATGACAAGAGCAAGGAAAAAATACTCTGTAAGACTGCAAGAGACGTCGA
TAAATTATAAAATTGCAACAAAAGAAAGATAAATCAAATCAAAAGGATGTCAATAGTATG
GTTTATAAGGTTGCAAATCAAGATTCAATAATAACAGGACAGAAATGTAGGTGTGACTTG
CAAGGGGGCACTTATGAGATAGAAGCCTAGAACCACTAAAATGTACCAGGTAGATCTGGA
AATTTCAAAAATACAATATCAGCGTCCTATCAGCAAAGAGGTTAGGCCAGAGTTGCCTTT
GAGCAGTACTTTTCCACCTTATTAAGGTCTGTCACACTTGAACCAGTCCGATAAAATTGC
ATCTGGACAGTATTTGAAAATAAGCTTGGAATGCAGGAATTAATTGTTATGTAAACAGCA
CAAAAATGGTGGGGCTAATTTTGTTGTAAAGCCAGATTCCATAGCAGCTCACATAAGGGT
AATGATTCCATTTGTATGTTTATATGTTGATAATGAATCTTACTATACTTTTTGTCAGGT
TACTCAGATGAAATATTTGGTTTATTAATGTTCAATGATTAATATTATCATAACCAAGGA
AAAAGAAGTCGTATATTTTTAGAATATCTGGGAGCATGAAGCATCAATGTTTTCTCACCT
TCCGCCCTGCAAATCGCTGTGTCAATTCAGTGACATGTCTTCTTACTGCTGCAATATCCA
ACGCTCTTTTGAAACGCTCAGAGTCTATCCCAATAGGAAACTGAAGATTTCAGCCAAGGG
AGTCAAAAGAATCACCCAATTTGCAACCAAACATGTCAGATGATAAAGTAGCTAGATAAA
ATAGGAAGTTCTGATGTGTACCGCTGCAACCCGTGTTAACTTTCCCTGATCCTCCACACC
CTCAGGGGTACCCTCGAGTCCAAGTATTCTGGTACATGCACTCACGAAATGCCTTGCATA
ATCGTATGTATGAAATCTGAAGAAGGACAGTAAGAAGTAATAAAATAAACCACCATAAAA
TTCAAAAGTGACGCAATAAACGCGAAAACAAGATGCATGCTCACCCGACTAGATCAGCGC
AGAGCACGGAGCGAAGCAGCTCAGAGCGGGATGGCAGAGTACGGTAAATCTCCGAGGAAG
GGAACGGCGTGTGCAGGAACCATCCGACCTTCATGTTGATGTCATGTTCTTTGAGGCACT
TGGGCAGGAACATGAGGTGGTAGTCATGGCACCAGATCACATCCCCTTCCTGGTAGTGCT
CATAGACGACGTCTGCAAACATCTGATTGGCTCGCTTGTACGCGTCGAACTGCGACTCGA
AGTTCCTCGTGGTCGCCAGCCTGTCCTCCTGCGGCAGCCCCAGGTAGTGGAAGAGCGGCC
ACAGTATGTTGTTGCAGTACCCGTTGTAGTACTGGTGCACAATCTCCTCATCCAGGAACA
CTGGTATGCATCTCTGTTTTGTTCAAAACGATCATGGATTCAGTCACTACTCACTAGACT
TGTGAAGAAAAACAGAAAGCACTGTTCTATTGGTTCAGACGACATCAAACATGTCCTAGA
ATCTGTAGATTGCAACGAACCTTCTCGGCGAGCGCACTGGTGAGAGCCCGCTGGCCGACC
TCGTCGGGGACATTCACACCCGCCCATCCGATCCACTTCGCGTCGACATCCTTCACGCCT
GCGGCGTCAGAAAACTCAGTACATGTGCGGCGTCAGAAAATTCAGTACATGCGTGCAGGA
TTGTGATGCATGCATCGCTGAAACCGAAATTCTGGGGCTGAGGATTACCGAGAAGGGCGC
TGACGAGGCCGCCGGCGCTGATCTCCAGGGACCACTGATCCTCGCCGCGGCGATTGGCGG
AGACGGGGAGACGGTTGGCCACAACGAGGAGGCGCTGCTTCATGCCGCGGAGGCCGAGGC
GGCGGAACCCGTTGCGTGGTCCGGAGAGCGGCGGG