morexGenes - Barley RNA-seq Database

Contig contig_61776
Source Contig contig_61776
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_61776 (9140 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_61776

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72495	2	1986 bp	MLOC_72495.1	Available	Available	LOC_Os01g46840.1, FRAME:+3, EVALUE:4e-29, 13101.m04818 protein expressed protein
MLOC_72547	2	2372 bp	MLOC_72547.2	Available	Available	LOC_Os09g28620.1, FRAME:+3, EVALUE:1e-133, 13109.m02824 protein gibberellin receptor GID1L2, putative, expressed
CDS Structure of MLOC_72495

CDS Structure of MLOC_72547

Contig Sequence (9140 bp)

>contig_61776 9140 assembly3_WGSMorex_rbca.fasta
AATTAGGACCGCGCTTGCATTTAACTTTATAAAATTATACTAAGCTTAAGACACTTATTT
TGGAACGGAGGAAGTATGAGATAAGTAGGCAAAAATGAGTATGAAATGATGTGAGTATAA
TCAGTTTAGGGGAAAAATCAGTATGAAATGCAGGCAAGCGTATAGAGACATATAGGAGAG
ACATATAGGCAATCAGATAGAGATTCGCACGCAACAATCATTTAGAGAATAGGCAATACC
GTGTTTGTGTTTTTATTTTATTTTTTGAGTTTATTTGATGATGACCAACCAGGCTTCAAC
TTTGGTGTCCATCTTGGTGTTTTGGATTTGGATGTAGTAACGACGGACTAAGTTATTTGT
CTGGTTTGCAAGGATGGATGGGATGGTGCCCACGGAAAATTTTGTAGGTTTTAGCGTTCA
ACATGAAATAAAACCAAATTAAGCCTCCTTAATTGAATCAACTTTTTTTAATCAAATGAA
GGCAAATCTGTTGCCTCTGTTTTCGCAAGGAAAATACGCAGCGTATGTTTGGCGTGGAAA
CTTCATGCTTCCTGATATGTGTGAATACCTTCTATGAAAATCTTTTTCGATCTATATATG
TGTGGATACCTTCGTCATTTTAATTTTTGCTGCTTGCTTTTTTTGTCCATCGTATCATCC
CAATAGCTTCATTTTATTTTGCTACCCCTCATCAACATCATTATACACCTGAAAACTCAC
ATTCATGAGAATTTAGTGAATTCATGATGCTTTTTTGTGGGTACTATATATCTCAACAAT
GCATGTACAATAAAGGGAGGGGCATTTCTATGTGTTCTTTTTCCTGTGATCGTATGCGCG
GTCCCAAAACTGAAGCGGATCCCATATGCATCCCATATTTCTTTATGTTTTTTCTGTCTA
GGCAAGGTTTTGCCTCCAGTAGTCGGCAAGCCTTTTTCAACACCAGTTTCTTCTAACTCA
ATTTCCTTTTTCAAATGCAGGCAAGACAAAAGTGAAAAACAAGGTGTTGCTCTGCCATAT
GTAGGCATCTTCATTTGTATACTAGGCATTTTGTTTCAATTTTTTTATTTAGTAGTCAAT
TTGTTTCAGCCAAAACACTAAATCACCCATCTCACAATTTAACCACATAGTTTCAGTCTA
CTTTCTATGCAGGCAACTAAATCATTTTCTACCTGCAAATTTACTCGACCAATCCGACAC
ACAAAGTCGCTCACCACCAGGTGCTACGTCGCCTAGCCCGCCGACCTACTCGCCAACACA
CACACCCGCACCCCTTGAGAAATCACCTAAGCCGGCCAAAACGAATTAGTCCACACCCCC
CTGCTAGGTCGCCTAACCCGTCGACCTACTCGCATAAACACCCCACCCCCTTGAAAACCC
GCGTAAGCTGGCCGAAACAAACTTGCCCATCCCCATGTGCTAGGTCGCCTAACCTGCCGA
CCTACTCGTCTACACACACTCACACCCCTTGAGAAATAGCCTAAGCCGGCCGAAACGAAC
TCGCCCACCATCGGGTGCTAGGTTGCCTAACCCGTCGGCCTACTCGCCTACACACACACC
CACACCCCTTGAGAAATTGCCTAAGCCAGCCGAAACGAACTTGCCCACCATTGGGTGCTA
GGTTGCCTAACCCGTCGGCCTACTCACCTACACACACACACACGTTGAAAAATGCCTAAG
CCGGCCGAAACGAACTTGCCCACCACCCGGTGTTAGGTCGCCTAACCCGTCGACCTACTC
GCCTACACACACCCACCCCCATTGAAAAATTGCCGAAGCCGGCCGAAACAAACTCGCCCA
TCACTCTGGTGCTAGGTCGCCTAACCATCCGACCTACTCACCTACACGCGAACCCACACC
CCTTAAAAAATCGCCTAAGCCGACCAAAACAAACTCGCCCACCGCCAGGGTGCTAGGTCG
CCTAATCCGCCGGCCTACTCGCCTACACACACACACCCACACCCCTTGAGAAATAGCCTA
AGCCGGCTAAAACGAACTCGCCCATCCCCCGGCGCTAGGTCACCTAACTTGCCAACCTAC
CCGCCTAAACACACACACACCCCCCTTGAGAAATAGCCTAAGCCGGCCAAAACGAACTCG
CTCGCCACACGATGCTCGGTCGCCTAACCCGCCGACCTATTCACGTACACACACTCCACC
CTCCTTGAAGAATTGCCCGAGGGGGCCAAAACCAAACTCGCACCCCACCGGGTGCTAGGT
TGCCTAACCCGCCGACCTACTCGCCTAAACACACACCAACACCCCTTGAAAAATCGCCTA
AGCAGGCCGAAAATGAACTCGCCCACCACCAGGTGTTAGGTCGCCTAACCCGTCGGTCTA
CTCGCCTACGCACACACCCACACCCTTCAGAAATTGCCTAAGCCGACCGAAACGAACTTG
CCCACCACCCAGTGCTAGGTCGCCTAACCCGTCGGCCTACTCGCCCACACACACCCACAC
CCCTTGAGAAATCGCCCAAGCCAGCCGAAACGAACTCGCCCACCACCCGATGCTAGGTCG
CCTAACTCGCCGACCTACTCGCCTACACACACATCCACACCCCTTGAAAAATTACGTAGG
TAGGCCGAAAACGAACTCGCCCACCATCAGGTGCTCGGCCGCTCGGTCGCGTAACCCGCC
GACCTATTCGCTTACACACACCCACACCCCTTGAAAAATCGCCTAGGCAGGACAAAAGAA
AACTCACCCTCCTCCCGGTGCTAGGTCGCCTAACCTGCCGACCTACTCGCCTACACACAC
CGACACCCCTTGAAAAACCACCTAAGCAGGCCGAAAACGAACTCGCTGACCACGGGGTGC
TAGGTCGCCTAACCCGTCGGCCTACTCGCCTACACAGACCTACACCCCATGAGAAACCGC
CTGACTCGCCGACGAGGTTCAACATTCAGGTCCAAAAATTAAAGTTGCAAGCAAACTACA
CAAAAGATCTTGCTTGTTTTCTTGTACAAAAATAGGAGGGAGGAACCTTACCTGGTCTGG
CGTTGCTGGCAAATTGTTTTGTAAACTTTTCTTCTTACACCAGATTTGTTGCCTCATCAC
ACACATATGTAACACAATTTTCCGTCTTCTCGACTTTTCTTTCTTTGATTTTTTGCCTGG
ATTCCTATTGTTATTGCTCGACACGAAGCTCCCCTCCCCCATCTAGGCCATGACCTCCGG
CGGTGGCTGGGGAGAAAAGTGGGGAGGAGAGGGGAGAGAGTTACACGGGGTTTAGGAGGG
GCATAGGGTTTCGGTTGGAAGATCATGCGTGGGCTGTACCATCGCTGAATTTTCTCCTGA
CGGGACATGCTCATGTTTGTGGGAGTGGATGGAGCTTTCCTATTTTAGGAGGGGACTGCA
GGTGTCCTTTCTAATTTGGGCGATCGGTGCATACTATCGTACAACGCGCGTGTTACGTAG
TATCGTTCATAGAAAAAATACAACATTAGAGTTAGACTGGATATGGGTTCACTAATTTGA
GCGAAGAGATTTTCATCAACAAATCACAAAACTTACAAAAACATATAGAATGGTACAAAT
TTGTTTTAGTGGGAGAGGCAAATGTTTTCCACGAAAAAAGTTGGATATTTTCCGTCGAGA
TCGGGTTAGTTATCATACTCTTTCACCGTAAGGCTACTCCCAATGCTCCACCTTATACAG
GTGCTAAGGCTGCCACATAGACAAAAAATCTCATGTGGCATGCTAATTAATAGAAGAGAG
ATGAGTGTGGTGATCCAGGAAGAAACAATGCTAAGCGCGTGAACCTAGGTAAAAAAATTA
AATGAAGAAAATGCATCAATGCATGCACAACTTTAGTTACAAAAACATTAAATAAGAAAG
CTTAGCTACAATGCTAAGCAGCTATGTATTGAGGACTTTAGTTGCTAAACTATTCATGCT
TAGCACCTTATCTTAGCGTCAATGCTAAGCGTCGTTTCCACTCGCTCCCTGATTCCCAGA
CCAGAAACCCCATCCCCCCCTCCCCTGCGGACCAGAAACCCTCCACCCACCACCACCACG
ACGAGCACGACGAAGGCCCTATGCCCCGAGGCAGCTCGCAGCGGTGCACCGCCTCCGGCC
CGCCGGCCTCGATGGTCTCCGCCTCCGCCTCCGCCTCCGAGGACGAACTCTCCCTCCTCA
CCGGCCCGCAGCTCGTGATCCACCTCACCAAGACCCACCGCAGAGCCGACTTCGATGCGG
TTTCGCGCATCCTCGCCGCGCGGGACCACGAGAAGGCCACGGCCGAGGCCAAACTGGCGG
CTGCGGAGGTCGAACTTGAGGCAGCGAGGGCGCGCTTGATGGGGGTCGACAAGGTCCAGT
CTGACCTAGAGGCCGCGCTCAGGGCGGTCCACGCACAGCAGGAGAAGATAAAGGCGTTAG
CTGGCGCGTATCGCTGGCCGCGGGACGAGACCGAAGAGATGGCGCTCGTGCCCGGTGATG
CCGCCCCTGAACCGGTGCATCAGGACGAGGGGCGCGTCAAGGAGGCGAAGGAGGGGGAGG
GGGAAGACGACGGCATCATTGACCTGTGCAGCGACGAGGAGGAAGAGGAGAAGACGGCGG
TGGCCGGCGAGATGGAAATGGAAGGGAGCGGAGATGAGGACGACAGAGTGCCGCTGAGCC
AGCGCTTCAAGCGTCTACGGCGAGCCGAGCCCGGTGAGTTGGAATCGGGGAAGGGGGGTG
GACAGGGGCAAAGCGATTCGGTCGGTACTCTGGGAAATGATCAGCAGAAATCTTCGTCCG
TAAAGATGGAGGGGCAGATGACAAGAACCGGGAAGATGACATGTATTCTTGAGGCTTCAA
AGGCGGCAGCTTCCGTGCAGGAGAGTGGAGTTGTGAAATCAGAGAAGTTTGATGATGAGA
TGCCCAGGACAGTGCTGCTTCCTTCTCGGGGGCTTCTTAGCACGAGCCCTCTACAGAAGG
CTTCCTCCAAGAGTGACTATTGTAAAGCTGGAATTGGCGAAAAACAAGGCTCATTTGATG
GTGTTCCATCTAGTGGAGTCAGTCAGCTATTGAAGGGGGATGCAAAAATGAACCAGGCAC
CATTGGTTGGATCATCGAACAAATGTGGCACCAAGGTAATTGGTGCTGAAAAACATTCAC
CTCTATTAAGACCATGTGAAGAGCGGATGATAACAAGGGATGTAGTTCCATTTGAACCTT
GCAATGGCAACAGCATGTATGTCCAGGTAAAAAGGGAGGCGGGCTCATTGCCTTCAACAA
TTACCAGTAAATGGGAGTCTGAAGGACATCTGTGTAGCTCAGTTTGCAACCATGTGGAGA
TAGCTATGCAAGCTCTCTGTGCTCTCTATCGCCAGAGGAAGTTAGCAATGGAGGATGCAA
GAGAGGAACACAGGTGTGTTAAAAGTTGAATTTGCTGAATGTTTAAACAAAAAAAATATA
TTATATTGTTGCATATCTTGTGTATATCAATCATCACTGTTTTTGTTTAGCCCATGCTAG
TAATAAACCTTAAATCATTTCAGATTGTGTTAAGTTGTAGAAATCCTAAATATCCGGTAG
TCAATTGTATTAGAATCAGAACTGACATTGAGTATGGTTATGAAAGCCCCATAGCTTTAG
AAACAGGAGAGCAGGACAATATGACATCTCTCACTATTTTATGTCTCATAGCAGCTACAT
ACTTCTCTATGGTCTTATTTGTTTGTTATTCTTCTGTTATAATACTAGTATATTAAAAGC
ACAATACGACGGAACAAAGATAGACGAGTATCCGACCGTTAATCCAGTGGACCTCCTTTA
ATTAGTTATTAACCACAACTGATAGATCTTCATAATTGTACGTAGGCAGACTGCAAGCGA
TAGATTCTCATTATAGTATGTAAATAGATAGCATTTGGTGGATCTTCATAACTTTACCTA
AATAGATCACATCCGATAGTGTATACCTGTAATTCCCATTTCCTTACGAAAAAATAATTC
CTGTTATCTCTTCCGATTAACCGTTTCTTTGGATCACAACCTATGACAAGCCCGTGAGAC
ACTGTAAGTCCAGCTAAACATCCTAGGCTAATGAATTGGTTCGTACAGACTTACACCCCT
AGCAAATTGGTTCCTGAACCGATACATATTTCATCACATTGACAAATTCGGAACTAAGAC
CACCATATAATATATGAATATTGCAGGTATGCATCTGTGATCTGTGTGGATGGTATAAAA
TGACATGAGTTATCAAGATATACCTTGAACCATACAGAAACTAATTTAATTCTGATCTGC
ATGCTTGTGCATGAATTGAAGCATGATGGTTGTTCCGAGGATGGACATAGTACTTGTAAA
TGATTTGTGCAAGGAAGAAAGAGCAAGGAATTAGGTCTGGATCACCGGACGTCCCCTGCA
ATAAGGCGGCGATAACAAACTCATTGTAGTTAACAATAGCCGTGCCCTAGAATCTACGTT
ATTCCTGTTTTGCATCCTGTGAGAAAAACTGCTCAAGTTTAATTATGCATGCATATTGAT
CTTATATCAACGATCAGCGTTCTGAACACGTACAAGAGATACAGCGGCAATCTGCTAGAT
TGTGATGAGAACCTTAATAATCCTGTGTGATACAATATCATCTACAAACAATTTATTGGC
TCAGACAACGACTGGTTGAGCAGCCACATCAAATGTACGAACCACCAATTGTTTCACCGA
TCCAAATTTTGATGCACTGTACTAATTCAATATCAGTATAAACTATAAACATCAGCTTTT
GCACAATCAGCCCATTACAAACGGCTGAGCAATCAGCTTGATATATTTCTGTACTTCTTG
ATATAGTCAACTTGATTAATTCTGCGTACTGATGTAATGACACGTACAAATTGTTAGCAG
TTAGGTCTCCTTCTCACGTAGATAGCTGACCAGGACGTGCCCATTGCACGATCCCCTCTA
ACCTGCACACGACGCGCACGTCGTGCTCCCTGTAAACCAGCGCTCCACGCGCCCCCTGTA
ACCATATATAAACACGTGATATGGATCGGCAACACTCAAGGTGCTCTTCGCCCCCTGTAA
CCATATATAAACACATGATATGGATCGGCAACACTCAAGGTGCTCTGCCTAATCCTTCCT
CCAACCTACACAAATAACCCACTGGCTAAGGTTCCGATCTTTGTTTTCTTTTAAGGAATC
AACCGCTCGGTCCTGGTACAAAATTTCCTTTTATTTGCGTACAAGCAGAAATGAAATATC
TGGTTCAACGATATACAGTTTCTGCAGATTTCAGAAGTTATGCATGCCAATGCAAGTTCA
ACGATATTTGAAAATAAAGATGATATATATTTCCTCGCAAGCGCTGTGCTAGTTTAAGTA
ATAATACACACCTTTTGTTGATATATATCGAAACTTTGTAATCGTCTTGTCAAGTACTAT
ATTCTTGACCAATAATTATTTAGAACTATTTTTTCTTAATGCACAGTTTATAAAATCCTA
AAATTAGACAATTGTTGAAGGAATTTAACCATTCTTATCTATGGTGAATTTCATTAGCTT
TTAGTTTTCTTTTTTTGGGTAAGCAAGAGATGGGTTTTGATTTCTGCAGAATCGAGGAGA
CATAATCAATTAAATAAGAGGTCGCAGAATAAAAGCTGATATTGATACCAATATTTCATT
TACTTTGTAGTGTATTACAAGGTCCAGTAATGTCCAACGTTTCTCTCGAAAATAAAACAA
AAACTAATTTTTGGTAGTCGATCTTGTATTGCTCCATCGGCACATAAGATATTAGAGGGC
AACGTCTTACATGTTTGAACTTTCTACTCTGTCTTCTGTTTGATGTATTCAGCATCACCA
GGTTGCTTGAAAATATGTTAACTTAGTAAAAACTTGATAGGTTAAGTTCAACATCACTTA
CCCAGTTGGGAAGTCACTCGAACAGAAAAACAACATTTTTTGCTTTTACTCCGGTCACAT
CACTCAGCGCAGTCTTAAAATTCTATTTTAAATTTTGCAACTAGGTTCTGAAGCCAAGTT
GCAATCTAAAATTTTGAATTTTGTAATGTTTATTCCTCACAACTGTCTTTTAGTATGTAA
TTTTTGGTTGAACTTTGGCAAGTCGACAGCCTTCAATTTACTCATGCAATATTGTTGTTA
ACTCACCACACGTGTGAAAGCATCCCTGTACATATTGTGGTATATCGTCTATGAATGCAG
TTTTAAATGCTGTAAAGCATTACTAGAATAAGGCATTTTAAGTAAAATGCCCACGTTATT
TGTCTGTGCAACCATTCACTTATATAAAACCATTAACTGCCATTTATAGGCACTTTCTAT
AGAGGGAGTAGGTGATTCCTGTTATACCACCTTGGTATGTGTGCATTGCATTTTTCTTAG
TAATACTATATGTATGTGATACTTAAGTACTGTTTCATGACATTGATATCTGAAACTATA
CTTGTTTCTGCTGTTTCACTTCAGGGCACATACTTTGGCGGAGTTTCTTTTGGATGGTGA
TCTGCAGGGACCAATGAGAAAAACTGTTGCGGAACTAGTGAATCATGATGAGACAAATCC
ACCTTTTCTTATTCAAGTAACAATCAGTTGCTCTGGGCAGTTGTACGGCATTTTCAGGAA
CAAGGAAGATCCATACTTCTGCTGACAACAACGAAGCAGCAAGTACAGTATGTGGGTAGG
ATGCAGACTCCGTAGCTTGTACCGAAACCAAACGGTATGGATTAGAGTGATCCTAGTTAG
TTCCTCGTCGAACCATGGTTTGAACCCGTTGATGAAGAAGCGTAGCATAGACATGGCGGC
CCTCATGCCGAGCTTTGTTTTCCGCTAGGGTTTGAAATGCTGATGCCTGGGGTGTATCTC
TTTCGTAGTACTCCCTCCGTCCTAAAATAACTGTCTCAAGCTTAATACAACTTTATATTA
GAGCTACTACAAAGTTAAGACATTTATTTTGGGACGGAGGGAGTATGATGTAGTCACGTG
ACTCCCTTGCAAAGGGGCGCTCTAAGAATCCGCTGGGTTGCGGATTTCGTTATCATCAGT
ATGACATTGCATTAAGGCTGGCTATAGTGGGGAGTATGATATAGTAGTATCATGCATATG
ATCTTCATAATGCATAGTATCATAGATGACCTTATTTATTGACATACATGACATATAGTA
GCATAGCATTTAACATGTTA