morexGenes - Barley RNA-seq Database

Contig contig_61716
Source Contig contig_61716
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_61716 (7361 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_61716

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72470	1	862 bp	None	Available	Available	None
MLOC_72469	3	1393 bp	None	Available	Available	None
CDS Structure of MLOC_72470

CDS Structure of MLOC_72469

Contig Sequence (7361 bp)

>contig_61716 7361 assembly3_WGSMorex_rbca.fasta
CCCATGCGACGTTCCACAACAGTTAGGAGTACTCAATTATGAAACATAACACCGGTACCT
GAAACTAAGGCGGCAACAACAGAACAAAACACCCAGCCTAAAGACCAAGCCTTCCGCCTT
CTACCAAGTATATAGATGCATTAAATTAAACAGCAATAATATGGTGATATAACAAGGAAC
CCATGTTTTCAATTGTAAGCAACTGCACCTGCAACTAGCAACGCTATAAGAAGGCTGAGG
AAGCGATAACATAGCGAAACAGTGGTTTGCTGGCTTGTGGAATGGTTAGAGGCTTTTCAT
GTGTTGGGAGGCTCATTAAAAAGGTGGTAGGCAGTAAGACATAACGATGAAATGAGCCAA
CTAGCATGGCAATGATAGTNNNNNNATCTGGAGAAATGGTCATCTTGCGTGTCATCCCGT
TTGGAAGAAGAACAAACCCGTGAAGCAGACGAAACAACATAGTCGAACGAATCATCACAT
TCCGACATGCTTGCAAAACTCTATCGAGAGAAGCAATCTGGAAACAAAAATCAACACACG
ATNNNNNNNNNNNNNTATGCATGACATGATGCACAAACACAGATGATGCATGCCCGATTT
AATTATGCAAAGCATGGCACATCACCACGATCGAATACTACAAATTAAGTGAAGCTAAAT
ATGCAANNNNNTGCATATTGACAAAACTCCATGTTCATATATTTATTTCACTCCTGTTTA
GGTAATCATCAAGATTAAATGTTCTCTAAACATGACAAGAGATGAAGCATAATTAAACTA
CATATCTAGCCATTTTAAATGAAGTCGGAAACAACTTATAGCATTTCCGAAATGACCCCA
TGTGCTAAGTTCGAAATCTGTCCATCTCTGAACTAAACACATTTTATATTAATTAAACTG
CAAAATAGACTTTACCATGTAATTCTACACGTCATTCTAGTCAATTTACATATATAGATC
ATCTAAAACGGACATATGGTTTAGAAGATATGCTCGTCACAAGATAATATGATATGGATG
CAAACTGCATGCAAAGACATCCACGAGCATGTTAATCATGAATGCAACAAGATGTTACGA
AGCTACAAGATATTCTAGGCAAGTTTAAATTAGGCCGGGACAACAAATAACAATTTAGGA
AAGTCTTTATATGTAATTTTGAATTTGCTACAGTTCTGCCTAAACTCAGTTTTTAGAGTT
GTTAAATAGGAAAATAAATGTCACCATGTTATTCTACACCTTTTCTAGCCAAGTTACATA
TGTAGAACATTTTAAGCAAAGCTATGGTTAATTGGATATGGCACAAACCGTTACAACATG
ACATTAGGCAAATTTTAGTGCAACATTCATTTATTTGTTTATATCACGCATGAGGATGAC
ATTTTAAGGTTAGATGCAACGGTAAGAAAATATGAACTAAGAATATGATATGTGCATCCG
TCGCCATGTCAAAAAGAAATGGGAGCCACGACGACAAAATGAAACGGTGCCACAACAATG
TTTCGTTTCTCACAACTCATTGAGACGTCGTTGCAAAAGAATAAATGTGCGAAACAAGCA
AAATGTCAGGGAGCAGATATGAGTGTGTGCAATATAAAAGGAAAACTAGATGACAAAATT
TGGGCGCCCTGGGAATTGACCCCAGGACCTCTTGGATGTGGGTCAACAGGATAACCAGAG
TAACATGTGCATGCTAGTGATTACAAAGTGTCATGGTTGTAGATAAAACAAATGCACTAC
TTGATACTCTGAAAACACAAATAAATGCAGAAGTAAAAAAACAAAGTTATGAAGATTTGA
TCTCAAGACCTTCAGGATGTAGCACTGTTGCGGTAACCATCTCGGCTAATAGACTGCTTG
TGGAGGATAACAGCAGTGACAATATAACATCAACATGGCAAAATGGATCTAGGAAAGAAT
TGAAGTTCAGATCGAGGGGGGAAGATTCTCATGGCGGGGAAACAATAGGGCGCCAACGTT
CGGGACTACAGCGCGGTGACAGGAGTCCACACGGTCGGGGTCGGAGACGGGCGTGAGGAC
TGGATTCGAGGGTGACCGTCCCGTTCCCAATGGCATCGGGGTGGTTGACGGTGTGCTCCG
GGCTGCAATGGCGACGCTGCATCAGGAGAGAGGTAGGGAGGTTAGGGAAGAGGGAGAGAT
AAGAGAGAGGGGGCATGGTGCTGGACCTGCGGTGCTCCGATGAGGTAGGAGGCTTTGGCG
TGAGGAGGCAAGCTCGTGCGACTTGGCTTGCCTCGGGCACCAGCGTGGGCGCACAGCGCC
ATGGCTGCTCCAATTCCATGCGAACAACAGAGAACCAGAGAGATGAGAGATCCTATGAGA
GAGAAGGAAACAGGGGAAGGTGTTACGGGCATGGAGGAGAGGGACGACATGGCCGAGGTG
GAGATGGGGTCAACCATGCTCGGGGATGTTGCTGTTTGGCTGGTCGCCGGCCATCGGAGC
AAGGCGGGACATGAAGGAGTTGCTCTCCTTTGGGCTTGGGAAAGGCAAGGAGGAGAAGGT
TGCGCTAGCTGCGAAGGAAGCAGAGGATGGCTGCGGGAGGACTGGTTCGGCGTGGAAATT
AAGGAGGTACATGAGGGAGGTTGTGAGTGGAGGCGGAGGAGATCCCGAAGAAGATGGGGA
ATTGGTTGGGTGGCGGCGGAGATGAGATAAGTTTGAGGATTTTTAGGGATTAGGTTTACT
AGGGGGATTATATAGGGATGGAACTATGGTGGGATGAATCGCGTCCGTTCGATGACGATT
CGATGGCCATGAATGGAGGTGGGGTTAGATGGGCTAGGTGGCTGTGTAGATGGGCTAGGT
GGGGATGAGAGGGAAGTTTGCCGCCCGTGACAACTTTTTTAAGCACAAAAACGTCCAACA
ATTTGACCGACTATAGTGCCGCTATAGGTTTTACGGTTCGGGTATCAAACAGACTCCTAT
TGTGATAAAATTTGGCAGGCGGACTATATACATAATAATAAGACCACACGTCAAGTTTCA
ACCCAATCCGAGAAAGTTTTATACATAGTTTTAAAGACAATATTTAACGATGTCGCATGC
TCGTGCGTGTGTGGTTGGTCTCGAAACGGTCAACGACGAAAATGGAGAGANNNNNNNNCT
AATAACGGATGCAAGTTTTGACAATTGACGTCAGTGGAGTGTTCATGCAATGCGGATGAT
GCGATGATGAACGCAACAACCAATTAAAGCAAACAACGATAACGGAATAAAAGGAGCATC
TTGTGGAGCGTCGGTTCCAAGCTGTTACAATCCGATTTTGGCTGGCCTAGGTAGTTACCA
GTATTGGTAGCACTCTTATGCAAAAGTTAGAAATTCCGATTTTAGGAAATGGCTAACCAG
GGAGTTGGTTAGTGTTTTTGGTCTGACCGAAATCAAACTTGGTGGTACCGAGATGCTAGG
GTTCGGCATATGTTGTGTCTAGGGTAAAACTTGGTGAGGCCGTTTCGGAAATATTAGTGG
CACCAAATTTGACTTTGTGGTTTGGATAGAATATTTGTGGGAAAATTTTAAGAGCATTTT
TGGTGGCTAATCTTTAAGCACTTGAGCAACCAGATCATCATAGTCACGTCATCCCCTATT
AATAGTATTGGCATTCCTATGGATTCAAATGTGATTTCTCATATAATATAAAATGTAGAG
TATTCAAGCTTGTTGCTTGTAGATGTTCCTTTAATGTAGGGGTTGTCCTGACAATCGTTA
GCCAAATCATCATTCAACTTTTCCTGACACTTATGTCACTGCACTAATATTTTAGAAACC
AAAGAGAGCAACAAAAAGCAACACACACACACACACACACTCTCTCTCTCTCTCTAGGCA
CGGTCTCCTTTGATAGCTACATAAGAAGTCAACATGAGAGCATCGACGCAGTCTTTAGCT
GATGTTCTCTGAGGTAGTGGTGTAGACACTATAGGTGTAGGAGCTAATGGAGCTGATGCT
AGGGCTGATGAAGACGGAAGTGAGGCAACAACAAATCTAGCTTGAGTTGTGAATTGAGTG
GAAGTCTGAAGAGAAGGACCATCATCATCATCATCACTTCTGGAGCTGGGAGTGGGCAAT
GCGTCAACCTCCTGCTCCAACTTGTTGATTGTAGTAGTCAGATCAGTCACCTTAATATCC
ATGTCATGAAACTTGGTTTCCATGATCCTCTCAAGACTCTTCTGATTCAGCAGAATATCT
TTGATGTTCTTCTCCATCCCTTGGATGGTGTTGATAAGAAATGCCATTTGATCACCCTTG
GATCTCATCAGTGGAGCACTAGTCGCTCTGGCAGCCTCTGCGTGGGCCTCAACATCTAAC
TCAGCTTGTGCAGTAGCTAAAGTCGGATGACTTGGGTCCATCACCATAATGTTATGGTCC
ATCACCACAATGTTATCCTCAAACTATGGCTTGAGTGGCAGGTGTTGATGATCAAGTAGA
TACACATTCTTCCCAATCTTGGAGTTGATCAATATCTGAATATATGGAGCGTATTCACAA
GACCTCTTTTGGTCAGTAGCAGTCCTTCTGATTGTCTCACAATTAAGTCCATCACCCTCA
TCCTGGTGTGAGTGTTTACATGGTGCGGCATGTTGATGGAGTACTCGTGGTAATCTTGTC
ATCACCTGATTTGGGCATCAAGGGGTACCTCATAATAGTGTTGGTCATGGGTAATCCTGG
TTGCAGAAAGTAGACTGAGCCTAGCTTGTGGGTCTCACGTACCCACTGGGCATACCCACT
GGGCACCCGGTTATACTATTGGCCATGGATTTGTGGTTCATTTTTTCCTTAGTATAAACG
TTTGTGTCTCGTTCTTGCACCTCTCGGCTCCTAAGATGGTAGCCCGCTCTTCAACTATGG
ATTGATACTTGGTGCCTTCTTTCATCCATACAATTCTACCATCTGGATAGAAGTGAGTTG
TAGAGTAGAATTGCATGATCATCTCATCTTTCCATGCTGTCATTTTTCTGCCAACAAAGT
CTTCAAAGTCTATGGCCCCGAAATTTTCTTGCACATGAGCGAAGTAGTCTTCATTCTCCT
TGATGTAGTCCCAATCTACATACATCATGTCAGTGACAACTAGACTCTTGTCCAACAAGA
CAGGCTCATAAAATTCTTGCTTGTCCTTTGTGTGGAAGCGAGCATCAAATGCAGTCCTCC
TCCTTATAGCATATGGATCAGTTGCTTTCCACTTCATGATCCCTTGATCCTTCCTTTCTT
TCATATTCTCTACCATGGGGTGTTCATCATTATGCTCTAGTAGATATGGTCTCAACTTCC
TCAACACAACAATTTCCTCTTCTTCTATAGCAGCATCCCTTGATGTAGAACCCTTGTTCT
TTTCAGCCGCAAGTATGTCTCTTGTAGTCCTCTTTGGCTTAGATGCTACAAGCATCTTAG
CCTTGGGAGCAGATGGCTTGGCCTTGGTAGCTGGCTTGCTGGGCATATCATCTCCCATGA
GCCTCTTCTTTAAAAGGAGGTGGGTTAGTTGGTTCCTCTTCCTCCTCTTATTCTTCATAT
GGATATTCAGGTTTAGATGGTTGAAGAACTATTCTAAGAAACCTGGTCCTTTTCCCCTTT
TGTCCTAGATTCTTGGCTAGTAATTTGGTCCTTCCAGCTCCACTTGGTTGCTATGAAGAT
TGAGACAACCCTCTTTTGGCTACAACAGACTGGAATCTTCCTCACTGTTGCCCTCTCTTT
CAACTTGAGAGAAGTGCTTTCCTCAGGGATAAAGTCAACATGTTCATAATCAGAGTTGAG
CTTCTTCCTTGCCCTAGTTGCTGCATTGGGCAAGTCATGGGAGCTAGGGGTGCGTGGGTC
TGACTCACTCCTCTCAGGACTAGTGCCTGAATCAACTTCCACACTTTGCTCTTTGTATGC
ATTCTGGGTGTCGTCGTATCTTGACATATTGACAAGTTGATCCTGTGAATAGTTATAGAG
GAGTGGGAAAATATGACAATCACAAAACACATACATTGCAAAATTTGAACTCGGAATCTC
AGTTTAAGAATTCAGCAAAGTAGGTTTCGGTTCCATCGAGTTTTGATTTTCGGAGACACC
GCGACAGACTTTCTCCTCAATAGAGACCTGAACATAATTTTTGGAGTCATGGAAATGATA
ACCCAGTCTCACCGAGAAAATTATCAGGGAAACAAAACCCAAATCAGTTGGACCAATTTG
CTTCCACTTACTGACACCGAGACGCACTTGGCAGAGCTCTAAACCTAGAATCCTTCAATC
GGCTAGACTATGAGATTTGTTTTGTGGATGGATGATTCACAAATATTGGTTAGAGGAAAA
CTAAATCCTAATGAGCATGATTTTTATGAATGAGCACAAAAGGGGCCGAAACAATACCCT
AAATTCGGTGAAGGTTCCACGACAATGACAATGGCGGGTGAGATTGCAATCGACGGTGAT
GGACTCCTACGGAGAGGGCACACGGGAGGCGAGTGAGAAGTCCATAGACACGAGCGGCGG
TAGCAGAGGGGTGTGGGAATCTGAATGATCGAATAATTTTTCGATCTCGTGTCCGCGAGA
TTATATACCCTCCTGCTGTCGGTGGCAACGATTCTATAATATTGGTGCCACCGAGTTTCT
TAACTATCACGGGTAGTGAAACTCGGTGCAGCCGAGATTATACGGTGGTACTGAGGTTCA
AAAACCAAATATACCCTAGTAATTCGGTGGAACCAAGTTTGTGGAGTTGGTTACACCAAA
TGGCACATGGGAGGTTTTGGAAGTTAGCTCTTGTCGAGTCAGAACTCCGAGTGCTCCTCA
CACAAAGGGTCTGAAAAGTGCTTGCTCAAATTTTGTNNNNNNNNATGAATAGAATTTGAG
ACAAGAAAGCATAGATAGCTAGAGAGGGGTATTTAGGCATTCTTGTATATACAATTGGCT
AAAGAAAAAAAATCCAAATAACAACAATTGGATATCATCGAATGAGTAGAAGTATGCATA
CCAACATGCTCACACAATAATATGTGAAATGAAACATGGCAAACATGCACAACCACTCTT
GTAGATACCAAGCACTTTGGTGATGACGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACTCATCGTTTAAGCACAAGTTGGGTTAC
CACTTTGGTATAAAGCTTTCATTGTGTTCACATCTTAAGAGATCCTTTGAGTCAAGTCAT
AGAAGAAAGCTCCCCCTTGATGTGATATCCCCCGTAAGAGGGATAATCTAACCTTGGGTT
TTGTCATAGAAGACTTCATGTAGGTGTAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTTGAGTTGGGATCTATCCTTGTTGTTTCATACTCTTCT