Map Locations of contig_61685 (9387 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_61685

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72453 7 4304 bp AK354895 Available Available None
MLOC_72452 5 4796 bp MLOC_72452.1 Available Available LOC_Os02g02970.1, FRAME:+2, EVALUE:0.0, 13102.m00261 protein expressed protein





CDS Structure of MLOC_72453






CDS Structure of MLOC_72452






Contig Sequence (9387 bp)

>contig_61685 9387 assembly3_WGSMorex_rbca.fasta
GGGAGCGGGGGCGAGGCCGGCGGCGGGGACAGGCGGGCGGCGGCGCGGGGGGAGCGGAGG
GTGTGGGTTGCCGTGGAGAGGAAGGGCGGGGGTGGCGGCAGCGACGCCGACGACCAGGCG
GCCGTGGGCGGGGGGTACGCGGGCGGGGACGAGGCCGGGGGGAGCATCGAAGGGGAAGAG
CAGCTGGAACCTGACGACGGCGAACAAGACGGCGATGCCCGGCGTCTCGGGGAGGAATTG
GAGGATTCTCTCCTCATCGCCGGTGACCAAGAGTGCCATGACAGTGACGGCGACCAGCAT
TCAAGCGAGGTAGTGGAAACCCCCCCAAAACCACCCCCCTCTTCAAATGATCTGTGGAAC
TGGATTGCACACTGCAATCACATCTGATTTGCCCCCAAAAACAATTCCAGCTTAACTTGA
TCATGTTTCTTGGCTATGCAGAACGCCATGTCGCAGTCGAACCAGTCACGGCGCCTGCAA
ATCAGAACACGCACAGGATGGATGGAATGCCGCCATGACATCGGCACCTTTGCCTCGGGC
CTGCTCTCCGTCTATGAATCCCTCAAGCCATCAGAGGAGCACATGTCCAAGCAGAGCCAG
CTCATAGACTCCATAACAAAGTCAGTGAGCAAAGAATGGCCCAACGCCCAGCTGCATCTC
TATGGATCATGCGCCAATTCCTTTGGGACTTCCCACAGCGATGTCGATGTCTGCCTCGAA
ATCGATATCGGCACGGGGAGCGAGGTGGAGCTTCTTCTGCGGCTGGCGGAGATCCTGCGC
GGTGATAATTTTGACAGTGTGGAGGTAAGTAAGCCTTCACTATATGTAGCTTTGCAAAAA
TCTGTTGTAAAAAATCATTGTTTATTGAGGTTGTTGGTTTGATCTTTATCATCCTTGCAG
GCGATTACCAGTGCTAGAGTGCCCATTGTGAGGATGTTGGATGCAGGGAGTGGCTTCTCT
TGTGACATTTGCATCAACAATCTATTTGCTGTCGCCAACACAAAGCTTCTCAAGGATTAT
GCCCAGATAGATGGTAGATTGCTTCAGCTGGCCTCCATTGTCAAGCACTGGGCCAAACTG
AGGGGTGTCAATGAGACATACCGCGGAACCCTCTCCAGCTATGCGTAAGTTAAATGATTA
TGATGGATTCATGTTTATATTAGTTTGTTTTTTAGATCATCATGTTTATATGATTTTCCT
CAAAAAATGGGGCCTCACTTGTTAATATGAAAATTGCAGGTATGTGCTCATGTGCATCAG
TTTCTTGCAGCTGAGAGAGCCCAAGATTCTTCCCTGTTTGCAGGTATGTACCTTACTTCT
GTTGCATCAACTTCTTCATGTATCATCTTCTTTGTGCCAATGCAGAAACCACTGAACTTC
CAAGTGCACTTTGTAAAATTTATCCAATTTTATAAATCCACTATTTTTCCTATTTATTTA
TTTTCGGTTTAATATAATATTCTTTTTCTTTTATTTTATGGTAGAATTATGTCCTCTAGT
CGTCATGGGTTTGCTCCATTTGACACTGTACATGAATATGATATGGATGATTGTATTTGG
ATGGCTCATCACCATCATTCAATTATGGTTTGTTGATTTTCTTTTCTTCTTTCTCTTTTT
ATTTTCAGTTTTTCTCAGATGTAGTAGGTTATTTTGTCATATATTTCATCATTTTTGGTT
TGCTGTATTTATAGTTACCAGGTAAGTCGGAAGGGAACATGAAAGTTCTTGTCCATGCTT
TCAGCTTCATGATATGCATCGGTCTGGTCCATTTCATCCTGATGCAACTAATGCTACCTC
ATTTCCCCACATTTTCAGGCAATGGAGCCCACATATACCATGGTTGTTGATGACACTGAG
TGCGCTTATTTCGATGAGGTTGATCAGCTTCGCGATTTTGGGGCTGAAAACAAGGAGACC
ATCGCGGAGTTACTCTGGGCATTTTTCCACTACTGGGCATTCCAGCACGATTACAGGAAA
GATGTCATCTCCATCTGCATGGGGAAGATAATCAGGTAGGTAATTAAGGACCAGCATTCT
TCTTCCAAACCAAGAATTCCATGTCGATTTAATTAATCTAGGTTATAAGTTTTTTTCTAA
AATTCTCACCTGGTGTGATGGCGCAACGACATGTAGCAAGAAGGAGAAGAACTGGACGAC
TCGCATCGGAAACGACCGCCATCTGATCTGCATCGAGGACCCTTTCGAGACCGGCCATGA
CTTGGGACGCGTAGTCGACAGACAGACAATCAGGATCGTCAGGGAGGAGTTTGAGCGGGC
TGCTGCCGTACTGCAGCATGACGACGACCCCTGCGCAACCCTTTTCGAGCCCTACAATTA
CGAAAACTGAACATCAAAAACACCTGAAAATTCAGATAACATTTCTGCCAGGAAGGCGAA
GGTTGTGATGATGAACTATTTGAACATTCTGGTAAACAGAAGAAATGAATGAACTGGGTT
TGCATTAAAGAAAAGATGAAACCGGGTCAGGTGCATTCACCTGCCAGAAGATGTGCCGTG
ATTCGTTGCAGAGAAAACTGATTTGGTAGGACTATGCTCTGCTGGAAGATGAGCTGTGCC
AGCTGCAGGCTGCAAAGAAGTTCACTGTGACCAGTACACTCTCATGTTCCATGCTCTGGT
CACCTGAAAAGAGCAATCTCAAACCCTTCTTTATGGCATGCAACTGCATGGATTCACAGT
ATGAAAACTCGAGGATCTCACTTTCCAGGATATTTTCAACATTCGTATTTGCTCATGTTG
TAACAAAAAACATGGACATTTTTGACCATTTTGTAATTCTTAAACCAACAAAATTCTTTA
CATGCTTGCGTAACTGCACTTTTACAGTCACCTTTTCTGCAGCAGTAAAGCGCGGGATGA
AGGTCCCTAGGATAGAAAGACACAATTACGAAAACTAAACATCAAAAACACCTGAAAATT
TGGCAACCCTTTTCGAGCCCTACAATTACGAAAACTAAACATCAAAAACACCTGAAATTT
TGGCTAGGAGACTGATTTCCACCCTAGAGCCAAATGGACTTTCCTAGCCCTAAAGACAAT
GAGCAGGTCTTGAACTTTGCTTCCAATGTTAACATGTGCAGCTCCTGCTCTAATCATAAC
TCCTTTCAGAATGATGGTTACAGGATTGCAAAACATGCATGTATTTGTCGTCCTCTTTCA
ACCAGTAATACATCCTCCTATGTGGCCTTCATTTTGACTTGCTCAGGCTGGTTGAAATTT
TCGTTATACAACATGCCTGTTGGAGAAACAAGCCGTTGTAGAGCGCTTCCAAACCGACTC
TGGAATTGGGAAAATTGTTCAAAGAGACCAGATTAGGGCTATCGTAAGACGTCGCATTCT
AAATATAACACATTTTACAGAAATGAACATACCCACTGGAAGAAGACGAGTACCCACCAG
CATAGTGTCAAGCTACTAAATTTTTCACGGACAAGCTTTAGATACGAAACAAGAAAAAAT
AAACCATCATTGTCAGAAGAGTATCCCATCGCAAAAAGTATGTATTACTGTAAAACTTAT
ATACTACAAAAAACAACTGAAAACAAAAGAACCTATTCAAGATGGCATCTGAGTTTTTGT
TCTTTTACTTGCTGGGTAGCGATCTAACAGCTTTATCAACCAACAACATTCACGAGCATA
CAGAGGTAGATAGATAGTTATCAGTACATAGCAAATTTTGGTCCTATTTTTCCATGGTTC
AGACCTGAGATTCAAAATATTCAGATCCTTCTTTTCTTTCTCGAGTTGGCATATCCTTTA
TCAATGTTATCTTTATTTAAATTAGAAAAATAAAAAAGTGATAGCCCAATGAGGTCTCGC
AGAAGAAGGAAATAAGGGAACAGACATTACCAGTAGAAGAAAGGTTCCAACGCAGAAGCA
TGCACCCATTGATTGACTCAAATACGTGAGATCCCTTCCAGCCTGAGGACAAAAAGAGAA
CCATCAGATATTGGAAAAAAAAGAAAAAAAAACATCAGAAATTTCAGGAAATCCTCCAGC
CAATGCTAGGTTCTCAACATTGATCTTATAAACTTAGCAGAATAGGCCCTTTAATCTGTT
ATAATTGTCACTGTAGTATCATAGCAAGTCAAGATGGTTACCGCATTAAATGATGGTTAC
AGGATCAGCCAAATGAAGTATACTACCAACTTACCAGTAATGCTCCTTCGAGGCTATGTA
CTGAAGGTGTCACGAACAATGCAGTGAAATATGGAATCAGCACTTTGTGCATCTGTTAAA
AATAGTGCAGCGGAATTATTAGTTTCTCACACAAAATTATGGTAGTCATGGAAATAAAGC
ATGCAACTTTCTGCCAAGAAACCAAGTTAATTCTCCAAAGAGTTAACAGACTGATATTAT
GAAGACAGCCTTTTAAAATCAAAATCAGAATTAGCAATAAATTAGTAAGCAGATTCGTAT
ATGCCATGGACCAGAGTTAGATGTCCCTGGATCCGGGTGCAAGCATGCCATGATGGAAGC
CATAGTGCAGTGGCGAGGAGGAAAAAAGGGCTAGATTGATATACTTTTTATTGCTTCCTC
AATCCATAAGAGGTCCAACGGGATCCCTTGGATAGGAGCGCTGAGTATTCAACAATGCAC
GATAAAAAAATGTCGATTCAAGAGATACGATACTATATATGGTGAAAGATAGCTTTTACA
ACAAGTTATAGACACTTGGAAACAACATGTACATAGACAACTGGCATACTGATTGTTTCT
GAGGAGCAATCCGTATCTGAAGTACTTCCACAACATGCAAATATTAAAGCAGTACTTCAT
ACCTGTTGTACAACCATTTGATCATTGGTAAACATACTAGGAAAAAGCCATGGAACAATC
GTTCCAGCCGTTCCTACAGTCAGTCCAGCTATAGCTCCAATAATTACGAGTGACTTGAGC
AGCATCCTTGCCTAGATTAAAGGTACCTTCAGTATCATTCAGAGTAATGAACATAATATT
CATACAGATTGATGTAGAAATAACTACGGTAAAATGCAGCCACTAATTAAGTCAATCAAA
GCACCATCAGTGCAGCACATGTTGATTCAAGTATGCGTAGTGGTGCTGGTTCACCAGCAG
CTTTTGCTCTGTTACAGGGAAGAGAAGGTAGGTGTGTACCAATTAAACATAGAAACCTGT
TACGCAACATGTGCAGCCTCATGTCCTAAGAAATAATAATCTACCAAAAATGCAACAGTA
TTAAACTTCTGATAGATTCTATTGAAATAAGATTATTAGAAATCTTAGATGAACTCCTTT
TTTCATTTCTAGGCTTTCAAAATGTCTTGTCAATGGCATAAGTCTTAGTCACATTCAGCT
CTGTTTTGACCAGATGAGCCTTCCCCCTAATAAAATTGATAATTACTTGTCGGCTTATCT
TGGCATCTGAAAAGGAAGCTCCTTATGAAATTAATCTGCTGAACCGATGAAAAGATGGTC
TGCATGTCATTGACACATTTAACCAAACAAAAGAGAAGTGTGAAAAATACAAGTGTCCAA
GCATACATGTTCATCAAACACAACTTTGGACAGATTCTCGGATATGTACTGATATTACTG
CTAAAAGTACAGCAAAGTAAAATGGTATGATATTCATAGGAAAATGAGCACTGTTGATAG
GTACCTTCATCAAATTGCGGTTAGCTCCGTATATCATCTCCGGCATAAAGGACTGTGCAG
TTTGTGACAGGGGCTCACCCCAAACAGTGCACATGCATAACATATTTACCATAACCTTCA
CGAGATAAAGTAAACAATATATGTTGTCACGCTTTTATCGACATGTCTTCATAGGGAAGC
CTTTCATAAGATAAAAAGTATGGACCTGATGGCCTGCAAGAGTTATTGCTCCCATAGAAG
TCGCGAAGTATGTAAGCAATGCATAAAATGCTACCTGAATAAGATTGAAACAATTAGTTA
CAGTAAAGCTAAGGAAAGGACACAGATCATTATACCCAAAAGAATGATACCTTGGATGTC
ATTGTCACGAAAACAGGAGCTGCGATTTCGAATATCTGAAGAAGCTCTCTTGTCGATGGA
ATTGTGAATGAGAACGCTCGAAAACCTCTACTGTTTAGATTTTGCATCATCATAAAAGCT
GCAACAATCTGAGCGTGTGTCAAAAGCTAGCTACTTATACAAAAACATGTGAGCAGCGAA
CTCAAACTTGCAAAGAAATTGGCAGTGTGAGGAACCTCACAAAAAGCTAGAGGTGGAGGC
TATCTGTGTAGCACAATTACAAATCATGAAGAGTGCAGAAATGGATAAGGAGATGCTGGG
ATTTCTGGAACATGAAATGCAACTGACAACAGAAGAGCATGTGATTCCATTTGGACAGGG
TGCAGTGTGCATCGATAAGTAATGTATTTGTAAAAATATGAGTTAACCAGGTATTGTTGC
TTAAGAGAAGGTGTGGAAACATGATTTTCAGCAATGTGGAGACATGTTCAGGAGACTGGA
GATATGTGTACCTGTGAAACCATAGTAGCCCAGGCGGCACCAGCAATTCCATAGCCACAT
ACAGAGCAAAGAAATATATCGCCAACAGCATTTATAACACTAGCTGCTGCCAATGCCTTC
AGAGGACCCCAAGAATCTTTCATGCCTAGACTGAATTACAGCAAAGATGTAATATAATAA
GAGAAACATCCGATAAAAAACACTGTAATACAACAACAATTATAAGACTTTTAATTGTTT
ACTGTTGCATGTACTATTGTACTCACGTAGGCATGTAATCCATACCCGCTTACTCAATGG
CAATTATAGCGATTGAACTAGAATACATCAATTAATGGCGAAAACATACTTAGAAATACA
ATTGTCAAAGACATTTGAGGCTTAAAACAGATGTCTACTAACATTCCAAATGAACATGTA
CAGTTCCACTAGTTCTTGTAGCTGCCAAGATAGATATAATAATGCAGTACCCCTAACGAC
ATGAATTCAAATAAAGACATTCAAGCAAGAGCTAACTTCATAATTTTATATTTTATAATG
TTGAGAAACATATTTCATAATTTTATTGAGTTGAGCTAGCTTCAATTTTGTTGCCCCAAT
GTTACATCCATTTGTGCATAAAGTACTGGAAGAAAACCATATTAGTGATAATTATATACT
TCCACAATCTGTAGTTCAGCAAAATAAATGGTCAAAAGAAGAAGGCATACAAGAAACAGA
AATTTGAAGAAACAAGTATATCCAATGCAATAAGAGACAAGGAATGGGCCGAGTTTGTAC
CTAGCACTTTGGGCAACTAAGCCAACGAGAACTGCAGGCCATGCAAAACCTCGAATCTGA
AATTGAGTTTCTGTTATTTCACATGAAACAGAGAATCCAATTTCATATCCTATAATAAAA
GGTACTGGAACAGTACTACAAGCATCCAAAATAAGATTCCACAATAGCCTTGAAGTCAGA
ATTACAAAATTGTAATATCACTAACAACGTAAGGGACCTATGCAGGCTGTCCAACCACTT
AATAATCAAATTAGAAAACAGAGACCAACTAGGTAAATTCAAAAATTAGTTGTATCTATG
AGATGGTGGTAAGCAATTTCAGAGCTAACTGAGCACACTGCATGGGATCCACAGTATAAA
AGATGCACATTGTCACACCTCTAGTTACGTTTCAATGAGCATGATCGTTAGGTAAGCTCC
TTTCCTTACTCATGTTTCATAGTTTCTTGCGCAAAACTATTACATTGTATTTCAGATACA
GCATGGTATTGAAGTATTCAGCCATATCCATTTATCTTATCAAATGTTTGACCGGATATA
CTCGAGTAGAGAAGGGCAAAAGCATAATGTGTCAGTTGTACATTAGAGAAAGATTACTGC
CCTTCGTCGGTCAACTGGAACTACTGAGAAACAGTCTAGATTGTGAAACTATTAAAACAC
AATTAACATATACAGACCTGTGCATATGTATTGGCAGCAGAAATAATTTCATGATTTTTG
GATCCAGTAAAAGCTGAAAAAGAATTTAATAAATCAAAAGTTAAGGTAAAATTAAGTAGA
ATACACCAAATACAAATTTTCAATAATGTAATGGATAGAACCACATCATGCATGTGAAAC
TCTAAACTGGTAGAACAAATACAGGGGCATCTGTTTCATAAGTACATGCCCTAATCAGGT
AATGAAGTCAGAACAAGCCAAACAGTTGGGATAAAAGCAATACATGACCCCAATTTTAAA
CAGCACTTGCAAGCTTAATTGAGTCTAAGGTGAAGGCTAAAGTGACTTTTCAAGTGAGAT
AGCAGGAAATTGCAGAATCTGATGACAAAAGTAGTCCTCCAGCACTTGTTAGAAAAGACA
AAATATCCAACACTTCAAATAAGATGATAGTTTCAAGTCCATTGAACATTTTGTTTCAAA
GACTTACCAGTCAATACTTGGACCCCCAAAATCCTAGTGAAGAAAAACATTCCTATACCA
AAAGTAAGAGCTAAAAATAGCAGCATAGACACTTGATGCTGTGCAAGTTCTTCATCCTGC
ATATAGTAGCGGTGACTGATTTAGATTACATATAGAGCAAGAAGGTGCATATAGGTGCCA
AGTTGCTGCAACAACGAGACAAATATCTGAAGAAACTTCAGTTTCTGATTATCTATAGAC
CATTAAATTGCCAAGTAAGTAACATCTTATATTTGAACGATGTTCTTTTCATTTTGAGCA
GCAAAGCAAATGTAGTTCATGAAGAAAACACAAACATATATCGACTTACTACTGTGCCAA
ATTTCTTCTGTAGAGTTTGTACTTTGGAAAGATTTAGCCAGCTTACTTTTGTGTCAATAA
AATATTTACCCAAAAAGCAACGCAAGGCCATACTCTATAGCTAAGTTGGTAATCCCTGTC
TCCCACTATTGCCGACGCACTGATAGTACACTTGCCCGCAACTTCGCAAGTTACTAATCC
AGCACGAGCTGCACGCACCTTGTTAGCTAAGGAGGTGGCCACCATGTTGGAGGTTGCGAC
CGACAGGAACATGAATATGTAGCACAGATAGTCGCAGAACACGGTCCCAGGCCCTGAAAC
CAGAGTTGAAATAAGCATACACCATTACACTTAAACTGAGGCCCAGCATGATGAGCCAAT
GCATTACGTTCATCCATTTACAAGTACATAATAATACTCCCTCCGGTCCTTTTTACTCCA
CATATAACATTTGTGATTTATGAGGTACAGCGCGCTTTGAGAACACACCTAGGGCTGCGA
GCTGGAGGGAGGAGGTCTGGCCGATGACCATGGTGTCGATGAGGCTCATGAGGGGGCCGC
AGATCCAGAGCCCGAGCGCCGGCCCGGCGAACACCAACACGTCCCGCATCTGCGCCCATA
TCCCGGCGCCCTCCGCCGCTATGGCCT