morexGenes - Barley RNA-seq Database

Contig contig_61665

Source Contig contig_61665

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_61665 (4731 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_61665

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72443	1	1120 bp	MLOC_72443.1	Available	Available	LOC_Os02g56610.1, FRAME:-3, EVALUE:5e-65, 13102.m06506 protein DUF640 domain containing protein, putative, expressed

CDS Structure of MLOC_72443

Contig Sequence (4731 bp)

>contig_61665 4731 assembly3_WGSMorex_rbca.fasta
TATATATATATATATATATGCATATGAGGTTACACTAAACAAATGCACATTTGAGGACTT
TTCAGACCATGATTTCGTAGCCCTTTGGGGTACCAAAGAAGATGGGAAGGCAATAAAGTA
GTCAATAAAGCGAGAATGCAATGGTGTACCAAAGAAGTATTGATCAATTGCTTTGCAATT
TTTATTTTCAAGTATGGAGCTTGCTGAATTTTTGAGTTTTTGTTGAAATTTGATACTTGC
AGTATTATGAACTTAGTAGAATGAATATTGAGAAAAAATCATTTATGTCTGTGCATGGAT
GGAAAAAAGAAGTGATTTTTAACGACCAAAACATGGGAAATATACATGTTTTGTATTGTT
GTGGGGTTATGAATTATGAATAAGCACAAATAGATTTTATCTAGCAGGTCAAATTAATAC
TCCGGTTTTATCGCATAAACCGAAGAAGCAACAAACTTGCTAGCTAGTCGGTTCTAAAAA
GAAACATATTTGTATTATTCTCTTTCCAGAATCGTTTGATAGGATACTATCCTGCAGATT
GCTTTGAAAAGATTTACTATGAGTTGTATTCGGCTACAGTACTCCAGAGTCTTTTGGAAC
TATATAGTATAGTTCTGAACGGTAACGAGTCTTTCTAAACTACTCCCTTCGTTCTTAAAT
ATAAGTTTTTTTATAGATTCTATTACATACTACATTTGCTTCTATATGTATAATCTGTAG
TAGAATTTCTAAATAGACTTATATTTAGAAACGGAGGAAGTATAAAGCTCTAACAGTTTG
TTCTATATAGTGGATGATGACCCACATGTTAGTGAGAAAGCACTTAGCACAATGATAAAA
CGTGGATATATCAGTAGTCGAGTCAAAATCATAAATTAAGTGTGTGTACGAACTGTGTAT
GGTGTGTTCCCGAAAAAAAACTATATATATATGTATGGTGCAAGATAAGAATGTTTTCCT
AGTTGTTGCCAACATGTAGCCCAGGACCACGTACATGTCAGTTAGAGATGCACGTACAGA
ATGGCAAACCCTGAAACATCATTCGCACTATTCAAATCTGGACCGTCACATAGCTATTGC
AGGAGTACATTGTTGAATTAAAGGAGGAAAATGGAGATCTCGTCATGATTTTTTTGTCAA
CTCACAGGAAGTTTGTTGTACGTGATATAAAATGTGAGAAAAACACAATCTCTTGTAATA
TACTCCCTCCGTTTCTAAATATATGTCTTTAAAAAGATTTCAGTACAGACTACATACGAA
TATACATAGACATACTTTAGATCATATATTTATTTATTTTGCTTCGTATATAGTCCGTAG
TGAAATCTCTTTAAAGACTTATATTTAGGAACGGAGAGGGTATAATCTACTCCTGGATTT
GTCCATATCAAAGAATTAATGCACGGTGTACAACGTGCATCTTGATGCATGTACCATGCA
TGCGTGAATGTAGGTAAACAGTTCCGTTTAGCACGTCAGATGCTAGAGCACAGAATGTAC
ACATATGTACTACTACGTCTTATATTAAGTTACAGAAGGTGTATACTACATTATCTAGAT
GCTACATACTTACCATTCATCCATGTACCTACCTATCGAGTTATGAGATTGAAACTCGAT
AATCCTACGTTAACTACTCCCACCATTCCATATTAGTTGTCGCTCAAAAAAGCAAAAATA
GATGTATCACTTTTAGATACATCTATTTGAGTGGCAACTAATATGAAACAGAAGGAGTAC
TATAAAATTACATCAAATAAGGAACCCCAAAAGGGAATAAAAAAAGGTATGACTTCATGC
AATTCTATATGTTTTGGTCAGAGAACTTCAAGTGGTAGCTAAAAAAGCCAACACAGTTAA
TAATAGTTGTGGACATACAAATCCAGATTTCACTTTCGAACATGTGTAGGTATAAATCAC
TACTCCCTCCGTTCCTAAATATAAGTCTTTTTTTAGAGATTTTACTAAGAGACTACATAC
GAAGTAAAATGAGTGGATCTACATTTAAAAAAAATATCTATATACATCCGTATGTAGTCT
TTTAGTGAAACATTTAAAAAAACTTATATTTAGGAACGGGGGGAGTAGTATTTCTCTCTT
TTTTCCTGCAAACAACCACCTACTGGAAATTGTTACTTTCCTACATCTGCAGCAAATTTA
ATTATGATAAAATCGTTGGCCAATGAAATAGCATTTTGACAGATAATGCTAATAAGACAT
TCATATATAACTTGACAAAGTTTTATCTTCACCTTGGATTTGGAAATAAGCACATAACCT
AAGATGAGATATAAGCACAAATATTACTGTGATGCAGGTTTTAATAGACGTCTAAAGATA
TAGGAACTTTTTTTTTGTTATATTAACTACAGCTAGCAGGCATACCTACAAAGTATAAAT
TTATAGTATCAGCTTATTGTTTAATTTCAAGAATTAATATATATTCTGTGACTTACTCTA
GAATATATAGTGGATTTGTTTCAGAGATAATGTCAAAACCCCAATCCAAACTGTTTGGAG
CTAGTACAACAGTACAGTCAAGGAGGCAGATAGTCAAAATATGTAGAATACTGTTCAGGG
AGGCTAAAAATTCAGTCATGCATGTTTAGTGGTCTATTGACATAAATCTACATGAACATT
GAAGCTATGTGTTAAAAAAATTGAATCCTAAAGTTCCTTCAGGAGTTACCACAATAACCA
ATGCAAGCAGCAGATCATATCCTCTTGTTATTTGGTTGTTTATGAAGAAAAAAAGAAGGT
TATACGAGATATAAACAATGCATCTGATCATAAACAATACCCTTATCAGAGTAGCAGAAG
GAATAGGATAGATTTTGTCTGTTCCCTCTCCACATCAAAACCCTTTTCTCAACTATGCAT
GTATTGAAGGGACAAGCAAAATCTAAGATAGTGGTAGGCAAGAACTGTTTTAAACAGGAA
TCTGAATGTGCTCTAGAATCTTGACTTGCATAGTTTTCAGGCAGAAAGAATAATGTGTGA
GGCATAACAAGGATAGCAAATTAACTTTAACCACAAAGAGTATATATGTGTATATCTATT
TCTTTCTTCAGCTTGAAGATTGATAGGAAGTATATGCATGCATGATGAAAATGTACGTGT
ACATACATACATATCTAGCTTCTCTACTATTCAAATCAGGAAAGGGACAGGCCAAGACAA
ATCAAGCCAAATCCAGTAATCCTAGCATGAACATGGGAAGAGAGCCAGGAGCATGAAAGC
ATGGGCTAAACTAGGGGTGGCCAGATAATATTGAAACCATATATATTTCTAGTGCCTGCC
CGTCTTTCTTTTCTCTGCTCTTTACGAAAGACTCCTCTCTTTCTTTCTTCTTTTGCTTGG
CTTTGTTTGTTTCCTCATCTATCTGTTGCCCCTTTGCAGTTTTCCACAGTACTGCAAAAG
TGAAGCTTGCTGCGCATGGCTAGCTGGTACTACATATCGTTCAAACTAGCACTACATGTC
CTTGCACATTGGCTATTGACTACTGAGGAAAGAGCAAGCAATGATTTTATAATTTTTGTG
ACTATAGCTAGCTAGCACAAATCCAAAGAAACATGTCATAGCATATAACAAACAATATGA
TTTGCAAATTGGGAAATATATAGATCATATGGATGCTCAAGGACAAGTACACTTTTTAAA
GCAAGACAAGTACACAAACACATGTTGTTCCTGTCTTTAGCTACCATGACAAAAAAATCA
CTCCACTGTGCCTTTTTAGCTCTCCTAACAATGGACAACCACCGGCAGTAGTACAATCAA
TGAAGGAAGCATTGCTGCCAATACAACAAGTACTTGTGGCTTAGTTAGCAAAGCTCTTCT
CACGAGAGCAAATTATATATAGAGTTCGTAGCTAGTTTTGTTCTTGCAATTTTCTCCAAT
GCCAAAATGGCTCACTGGTCACTACCACTAGCTAGAGATTCTCACGAGGAGCTAGCAAAT
TGAAACAGGCAAAAACAAAATCAAACTCAGCTACCAGTTGATCCCAAAGCTAGAGAGAAT
TAACAGCAACAAATTAGTACTCGTCACGAATGAACTTACTTGAAGTGAAACAAATGGAAA
TTAAGGTGGGGGGAAATCCTTTGCAAAATGCAAGAAGCCAATTGGGAAGGCAAGTAAAAG
AACAATGGCGGCCTTGGCGTAGTTGATCGATGAACCAGCACTGGCATCCCAAAGAAGGAG
AGAACTTGCGCGGCGGCTAGCTAGCTCAGATGGATCGCCTAGCAGCTAGGGAAAACTCAC
GGTACGGTCACGGCATGATGAAGTGTGGCGACGCCGACGTGTCGCCTCCGCCGCTGCCGG
ACGGGCCAGCAGTCGGGCTCCCCTCGGACGATGGCCCCGCGGCGGCGGACGTAGACGACG
ACGGCTTCTTGCGCTTCTTCTTCTCGTAGCTGATCCCCCTGGCCCGCGCCTGCGTCTCGC
GCACCTCGCGCAGGTAGAGGCGGACGGCGCGCGCGCCGAAGGGGTTCATCTCGGGCGTGC
CGCCGTTCTCCTCGTAGGCGGCACGGAGGCGGCCGATGAGCGCGTCGAGGGAGCCCCAGG
CCTGGCGGAGTGGGCACGGGCACGGCGCCGGCGGGTTTGGGTGGCCGTAGAAGGGGCACA
CCGCCGTGTGCACCTTGGTCTTGCCGAACTGGTCCATGTACTTGAGGAACTCCAGCACGT
GCGCGCCGCTGCACCGCGACAGCGACAGCGGCGGCCGGTGGTTCCGCAGGT