Contig Data
morexGenes
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Map Locations of contig_61662 (4367 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_61662

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72442 2 1126 bp MLOC_72442.1 Available Available LOC_Os05g46480.2, FRAME:-2, EVALUE:4e-34, 13105.m04962 protein late embryogenesis abundant protein, group 3, putative, expressed





CDS Structure of MLOC_72442






Contig Sequence (4367 bp)

>contig_61662 4367 assembly3_WGSMorex_rbca.fasta
ATGTATTTGAGTTTCCAATCAATACATTATAGCATGGATAATAAACGATTATTACGAAAA
AAATATATAATAATTACTAATTTATTATTGTCTCTACGGCATATTTTTATGAGTCTCTCA
CATGCACTAAAGTCAATAATGTAGTTCACATCACCATGTGATTTTAACGAACAAAAACAG
AAAACCAAACAACCTTAAAATTACCCATCGAACCATCAAATAAACTGACAAATCAAACCA
CCAAATAAACCGACAAATCGGTTAATACGGTTCGGTTTTATAGTGCCCACCCCTAAAGAT
GACTAGATAATTGATACAAAACAAAGCCAAATCTGTCAAATAATGCTAAATCAGTACCAT
GCCTCGCTGAGTCAAATGTCTATCGGTACCATGCCTGCTAAGTGGTGTACAGTATCTTCC
ACTGAAAATGTATCGTAGAAAAACGACTCCTTCAAATGTCTATCGGTACCATGCCTGCTA
AGAATCGTAGAAAAACGTATCTACGAACATATGATACCTCTATGAACATATCATTCATCG
TAAAAAAATGTCTTCCTTGAAAACGTATCGAGGAATAATGGGTTGGTTTGCGTCATGTAC
CATGTCTTCAGTGTACATCTTAAAGTCATGTACAATGTCTCAAGTCAGTGTACATCTTAA
AGTCATGTACAATGTCTCAAGTCAGTGTACATCTTAAGTCATGTACAATGTCTCGAAGTC
AGTAGCTAATTTGCATATTTTAAGGGTCAGACTATTTGCATATTTTAAAGGCCACACTAT
CTATGAAACACAATATATGTTTTCATTGACACTACCAAAATACAGAAATTCGATCACATA
CAACTTTATTGCCGCCTTCGAGTGTCCTCGTTATCCATTTACACCAAAGCCCATGGATTA
TAACTCATTACAGAACCAGAGACGAGTACATCAAATCGGAGGCAAACTTACACTAAATGA
GCGGAAATCATGAAAGAGTGGAAACATACAAATATGAAATATGTAGAAGGCCCTCGAACG
ACCAAACACGACTAAAGGAACGGAAATTAAGCGCGAACGCATGCGTCTAGTGATTCCTGG
TGGTGGTGGTGGTGTCCTTGACGGTGGCGCCGGTGGTGGCGTCCTTGGTGGCGCTGGTGT
TGTCCCCTCCCATGCCCAGCGTGTTTGCCACGGCGTCCTTGGCGCCCACCACGGCGTTCA
CCACCGTCTCGCCGGCCTGCTGGAGGACGCTGCCGGTCTTGTCCTTGCCGGCCACCGCGG
ACTCCTTGGTGTACTGCGCCGTGTCGGACGCCTTCTGCTTGGCCGCCTCGGTTGCCTCGG
CGGCCTTCTGCTTGGCCGCCTCCGTCGTCTCGGCGGCCTTCTGCTTGGCCGCCTCCGTCT
TCTCGCCGAGGGCGCTGCCGGTCTGGTCCTTGCCCTGGGCGGCGCGCTCCTTGGCCGCCT
GCGCCGTCTCGTACGTCTTGTCCTTGGCCGCCTGCGCCGTCTGCGCCGTCTTGTCCTTGG
CCTCGGCGGCCTTCTGCTTGGCGGCCTCGGCCGTCTCGCCGGTCTTCTGCTTGGTGGCCT
CGGCCGTCTCGCCGGCCTTCTGCTTGGTGGCCTCGGTGGTCTGCCCCGCCTTCTGCTTGG
TGGCGCCCATCATCTGCCCGGTCTTCTCCTGCAACTCACCCAGCAGATACAGAAGAACAT
ATCAGATCACCGCCGGAGCAACGCCGCATGCGCGCGGCAGGCAGAGTATAGATAGACACC
AAGGAGACGACGGTCACCTCGGTGCGGGCCTTGGTCTCGCCGGCGTGGTAGCTCCCCTGG
TTCTGGTTGGAGGCCATCTTCGTCTCACGATCTAGCTCAAACAAACACGAACTGGAATCA
CCACTCGGACTCGCTTTAGGCTGTTGCTTAGCTCACTTGGAATGGATCGACTGCTTGTGG
AGAGGAGATTGGCGCGGGTGGCCTTTATAGGCGGGAGCGACGGGAGAGTCGCCGGGACAC
GTTGCGCGGCGGTGCTCGTACATGGCCGCCACGTAGGGAGGACACGCGTTGCCGCTCCCC
CGCCGTACCTTCGCGAAGCCCCGCCATGTCGATGGAGCCCATGTCGGGAGAAGAAGCAGC
CAAAAGGGGCGAAGAAGCTGCAATAATAAACAAGTGTAAAGGGGTGGCGCGTGTGCACGT
ACGCCGGCGAGCACAAGTTGGATGCGGCTCTCTGGCTGGTTAAACTAGCTAGGGGGTTGC
ACTTGGTGGCGGTGCGGTGGACTGGAGCATGCACGGGATGGACGCCATCGATCGTCGCCG
CCATGTGCGTCGGCATCTCGGTGGATCCGTACGTCGACGTGTTGCTCTCTATCTCGGTGT
GATTTGTTTGTGCCTGCGATGCTTGTCTTGCCGCAAAAGGAAACCACACGAGCCACACGA
ATAGACAAGGCAGCGTCGCTCCACTCGATGAGATCGGGAGTGCTGCTTCTCCTCCCAGAA
GTAGCAGCAGTGACAAAGGAAAAAAAAAGATGCACCGTGTGCACGCTCGGAAATATCGCG
ATTTAACTCGAGGAAGAAAGAAGAACATTTCGAAGCTCAATGCCTTACGTAACATCAAAC
ACTTCGCGTGAAGGACGCTCTAGATGGGAGGAGCGCCAGCTTCCTGGCGAACAATTTCTT
TTCCTGGTTACTTTAATTTATATTTCTGAAAGATAAATATATTTTACTTAATTTACAAAA
TACTCATTGCACATTTGAAAAATGTAATACAGTATAGAAAAATGCTCGCGCAACTTTCAC
AAACATTGGTATCGTTAACAAAATGCTTATGACATTTTATAACGTTTACGTGCGTCAGAA
CATGTTGGTGCCATTAGGAAATATTTGTACAATGTGTTTTTTCGAAATTCATAAAAATGT
TTCATACCATCCAAACAATATATGTGGCCTTTTGAATAACTGGTTCTCTCCTTTCATGCC
ATTAAAAAATTCGACGTGTATTTGAAAAGTGTCTAACATCTGTTAAAAAAATGTTATAAC
ATGTATTTATAAGAAGTGTACATCATATTCAAAAAATATTAAACGTTTGTATCAAAATGG
GATTCATGTGTATACTAAAATTTTGAAATGTGTATTAAAAATTATACATGTGTTGAGCAA
TTAAATTAAACAAAGAAAGTGGATGACTAAAAACCTTGATGAAAAACCGATACAAAAACA
AATAGAGACGAAGAAAGAAGAATAAACCACACGGAAGGTTCTAAAACTGTTTTTTAGACA
AACTTTAAAGTTTTTATTCAATCTTCATAATGTTTATAGGAATGAAATCAAGTCCAATGA
GCTGACCTAACCGCGTGGGGGCGCTTTGGGGTGAGAGAAGAAGCGACGTCTAGGGCATTA
CGGGCCTGTTTGGGACCGCTCTGCTCTATCAAAATCAGTTTCGCTTCACCAAATCCATTT
TAGAGCAATTTTATATAGGAGTTGCGACCATTTCAAGAGAATGTTTGGCTCTCATTTAGC
TCCAGCTTCACGAATGGAAATTTTAATGAAAAGGATCTATTTGATTAAATGAGAGATAAG
AAACGAAGGGGTATCCACTTACTGGTGCTAGTAGTGGGTAACTTTCTTCCAACTCTAGCT
TCTATAATTTTATAGAGCACCTCCTATAGAGTTTCAAAAAAAACAAGGAGTGAACCCCGG
ATTCTAGTTTTTTTACGGAGCGGTATATCGTGAAGCTACCCCGTTTGGCTTACGTTTTCT
AGAAGGAAATTGAATTTTCTGGAGTAGAGCAGTCTCAAATAGGCTCTACATAGACCACAA
CCAGGGGATGTGGTCGTGAGGAGGAGGGGGCGGTGACGGCGTGGGCGTCGGCGAGAGGGA
GAGTCAGCGGAAGGAGTTACAAAGGTGGGGCGGAACCAGCGTCTAATACGATGAAGACAT
GATTTTTTTTAGAAAAGGAGGCTTAGCCCCGGCCTCTGCATCGAAAGATGCATACGGTCA
TATATTAAAACAAGCTCAAGTCTTAACCGAGTACATCTGGTTCAAAAAACTGAAATAAAA
GGAATATAAAAGGATACAAGATGCCAAATGCGTCCAAAACCGGCGCTGACAATATATCTA
GATGCCTAAACACCTATCCGATTATTGTGACGCCATCCAAACCGGTGATACCCTGAGCTA
CCATCTTCCAACGGACACACCCAGTAACCATAGGCTCCCTGGCGTCCACATGGGTGAGTA
ATGACCACGTACAGATCAATGCGGTAACTCTGAAGATGACCTGCAAGAAGTTAAAGTCAT
GTCGGCGGTTAAAAACTATGTCATTCCTGCAGTTCCACACGGCCCACAATAATGCACACA
CTCCCACACGAATACATTTAGTAGTTAAAGTATCAACCCCCTGTAGC