morexGenes - Barley RNA-seq Database

Contig contig_61606
Source Contig contig_61606
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_61606 (8455 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_61606

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72422	1	1658 bp	None	Available	Available	None
MLOC_72421	2	2578 bp	MLOC_72421.1	Available	Available	LOC_Os12g31340.1, FRAME:+2, EVALUE:7e-110, 13112.m03190 protein OsFBD15 - F-box and FBD domain containing protein, expressed
CDS Structure of MLOC_72422

CDS Structure of MLOC_72421

Contig Sequence (8455 bp)

>contig_61606 8455 assembly3_WGSMorex_rbca.fasta
GCGAGAGAGGTTAATCATAAGTGATATGTTTGTCCAAGTAAGGGCAGCACCCAAGCACCG
GTCCACACACATACCAAATTATCAAAATAACGAACGCGAATCACATGATCATGATGAAAA
CTAGCTTGACATAAATTTTCATGTATCCTAGGGAGGACTTTGCTTTATATAAGAGTTTGT
CCNNNNNNNTCCTTTGCTACAAAAAGGATTGTGCCACTTTGCTGCACCTTTGTTACACTT
GTTACTTGCTACCCGTTACGAATNACCTTATCACAAAACTATCTATTACTGATAATTTCA
GTGCTTGCAGAGAATACCTTACTAAAAACCACTTTTCATTTCCTTCTTATGGCTCTACGA
TAAATCCCCTACACTTGTGGATAGAAAAACGCTTGTTTTTGCTACAAAAAGGGTTCGACA
CTCTTACTTATCAAANNNNNNNNNNNNNNNNCCCTACACTTGTGGGTCATCAGGTTTGCG
TGATTCTCCTATTCGTTCGATAACCTTGGTTCTCACTAGGGGATATACTTATCTCTGTTG
TGTTGCATCTTCTCTCCTCTTTGGGAAAAAATCCCAATGCAGTTTACAAGTAGCACAATC
CTATTAAGGAATTACTTACTCCCGATGTTGAGCATCATGGGATTATTGATGGAGAAGGAT
TGGTAATGACTACGACAACGAATCCCCCTCTTCGAAGCTCCAAAGGGATTCCAGATCAGC
CCTCCCGAGGAAGAATAGGAGGTGGCAGTGCCTCCGTATCATAAAACAAGACGAAAGTTT
CTTCTTGATTTTTTATCCATGAGACAGTACTTATGGCGTTTGTTTTAGGTCATCCGAAGT
CCCGGGGGACCCACAAGCTCAGTGGGCGCGCCCAGCACGCTTGTGGCTCCTAGGTGGACC
CCCTCTGGTAGATCCTGATGGCAATATTTTTTATTATTCTAAAAAAATATTCTCCGTAAA
ATTTTTTTAGCTCAATCTGAGAACTTTTATTTCTACACAAAAACAACATCATGGTAGTTT
TGCTGAAAATAACGTCGGTTCGGATTAGTTTCATTCAAATCATGTAAATTATAGTCCAAA
ACAAGAGCAAACATTTTTGGAAAAGTTGGTACGTTTGGGAGCCATTGAGCTTATTTTCAA
ATGTTATGTCATTTTGCAAATGGTGTTTGGTCAAATGCCATTAAGGTTATTTTCAAATGT
TATGTCGTTTTTAGAGTTCGAGGGATGGTGAGCTACTCGACCATGAAGGATGAGTTGTTG
TGCAATGCGTGGCTGGACACATTTGCGGATTCGTATTTAGGACCACAGGGGAGCCCTTCT
CACAGCAAATGCGTGAAACATTTTATGCATGAAAGGACATTGCGCCCTATGACATGGACA
TCATTCAACCACGCAACATGAAGTCTTTGTCGTATCGCTCGCACATGATTCATGTCAGCA
TCACCAAGTTTTGCAACGTGGTTTGTCAGCTCGAGGAAAGGTGGCCATTGCACGCGGGAG
ATGAGGGACTCGTAAGTTTTTTGCTTCCTCTTGCTTAACTTGTTGATTAATTCATTCGCT
CAATGTTTCTCTACACACTATGTGTAGCCCGCATGCACTGTCGTGATGTGCCACACAAAA
AGGAACGACCATTTACGTGCACACGCTGTTGAATGAAGCTGAAGGGGCAACATCTGTGGA
ATGACATGGCCTTTTGATCACAAATTTGTTGGACATCTGCTTAATTTGACACCTTTGTTG
TACTCGACTTAATTTATATGGTATGTATGAATAGTTTGTGCTATTTTTTATCCGAATTTT
AATGAATATCGTCCATTTTGCATGATTTTTGTTTGAATTGTTAAATTCCGCTGAAATATA
TGCAACTACGGTTGGATGTCGTCCTCCCGAACCCGTATCCACGAGTTGGCACTTGCGCCC
ATCAGGTCAATACAGATGTGAAAATTTTAAGCAAGGAATGTTATTCGATGTGCCGTCGGT
CCAACACAAACTTGATGATCGACATGTACGTTTTTGCATATACATTTTTGTAAATAGGGT
TTATGATCCTAAAAAAAACAGAGGCCTGCTACGAATCATCAAACTGATTTCGTAGGGAAA
TCAGTCGGGTCCCCAACCATCGATCAAAAGCCCCACAAAGGTTGGATTAAGTTAAGTTAG
CCACGTCGTTCTGACGCAATACAATGTCGATGTGGCCTCGTCTTCCGCGCCTCACAGCCA
ACACAACAATTTGTTCACACCCCACCATGTCGCGCCCGCTAGCAGCACCGGGCTTAGCCC
ATTGTTGTTCCTCGCCTTGCATCGCGCTTGCGGCAGCACTACCCCTGCAGTACACCGCCG
CCGGCCATGGGAGCTCGCTTCTGCAGCATCGCCGCTGGTCGTGGTAACGACGTTGTCGAT
GCAACACCGGGATGACTCACATGAGTGTTGCATCGGAGAGCTCCATTGCAGCTCCGCTGC
CGGCAACGAGCGATCCATTGCAGCTCCTCCATGGGCGACGAGCGCTCCATTACTGCTCCT
CCGCGGATAACGAGCACTCCATTGCAGCTCCTCCGTGGGCGACGAGCGCTCCATTGCCGC
TTCTCCGCGGACGACGAATGCTCCATTGCAGCTCCCCTGTCAACGGCGAGTGCTCCATTG
CTCCTCCTCCGCCGGCAACGAGCGCTCCGTTGCAGCTCCTCCGTGGGAGACGAGCGCTCC
ATTTCAGCTGCGCTGCCGGCGACGAGCGCTCCATTGCTGCTCCTCCGCGGGCGACGAATG
CTCCATTGCAGTTCCGCTGCCAACGACGAGTGCTCCATTGCTGCTCCTCCACAGGCGACA
AACGCTCCATTGCAGCTTCCCCGCCGTCGACGAGCGCTCCTCCGTGAGAGCACGAGGCTG
CATTGCAGCGCAATCGAGGTTGCAATGCAGCGCAACGACCGTGGACAAGTTTTTGTGTTG
CATCCTAGTTGTCGTGGACGAGCTGCTTCTTTGCAGCACTGACTCGTGGCTCTCGTCCAC
GAGCGCCGTTTTGCATCGCCAACTGCAAACCTCGGACCCCCTACCGCTGTGGTGGTGTTC
GCCATGGCTCCCCTCCATGGACGCTTCTTTGCAGCTTTGCCGCCTCCAACGATGCAACCG
AGGAGCTTCGACTGCTAATGCCAATGGCCGATGTCCAATTCTTCTAATTCCTAGTTGTTT
TGGTAGTGCTGGTCGTGACTCCTCTCGTCTCGCGATGGATGCAAGAAAAAGAGACCAGAA
AGAAAAATGTGTGGAGGAGCAGCTTCGTAGAGGTAGAGAACTAGAGATAGGATAAGGTTG
GCTGATTGGGAGAAGGAGAAAGCGGTGGACAACCTGGGCACGTGGCGCTCGGAGAAGAAG
GCTTACGAGGAAGAGAGATCAGTCAGATGATTTTAAACGTTTTCCAAAAGAATAAAGTTT
ATGATTGTAAATAAAAAAATTTAAAGCATGCACGGTCATTGTCCGCCGACGCGTTCGCGG
CCGACCCAAATTTGCAGGTTGATGCTTAATCGAAGACCAAGTAATGCGGAGCAAATAATC
AAATGCGAGAGTATGTGGCAAATGGCCAAATGCCCTCATGACGAGTGTGTTACCGGACCG
AGATCCAGTAACTTCACTTCATGGAGTCACGCTGCAACTTTACCTTCCTAATCTCCGTCC
AATTCGCATCCTAAGTCCAGATCATACAAAGGCAAACGACCTCAGCACTTAGCAGTTTTC
GACGAGGGCGGGCTGAAGAAAATACTTCGCGGGCTTCTCTTTTGATATCTTTATGATGAT
ATGATTTAGTATCTTTAAAATTGTTAGGTAGTATTTTGGACAGTGTTAACAACAGTATTT
TGGGGGTCCCTTAGTCTTTTTTGGCTTAAATGTACAAGTGAAATGACATGTTTGTGTAAA
TGATTATTCAACGTTGGTACTTGTTGATGTAACATTCGGACATTATGCGCTGTGGCCTTT
TAATATCATGTTCTATCGGATTTGGTGTCAACTGCAATTGGTTTATTCAACTTTGATTGC
ATAATGCACTACCGTATAATCTATTCAATTTTGATTCGGTGTCAACTTCAGTTCTTTATT
TTTTGAGTTTTAATCTGTTTAAATAAAACTGAATTCAAGTGCCACTGCATCGTTGTTTGT
AGCTAGTGTGTATTGTTGTTTGCTGCTAGGCTGAAAACTAAGTGCTGTGGGTCTTTCCCC
TTGTGTGATCTGAACCGTAAGATGTTAATTGGACCGAGATTAGAAGGGTAAAGTTGCAGC
GTGACATGAAGTCACTGTCATGTCACTGGATCTCAGTCCGTGTTCGTGTTTACCATGGTG
CGGCAGCATCTACACAGCTCCTCCGCTCAGCTTTTCGCGCAAAGAAAAGAACTCCTCCGC
TCAGCTCCGGCGACTCCTGTCCTCTCTCCTACTGCCCCTCCGCACCGCCCTGCCCCTTCC
GCTTCCCGAGAAACCAAACCGTAGCCTCCTTCGACCATGCGAGATGGTCTGCGGCCGCGG
CGCCAGCCGCCTCCGCCGGCCAAGGAGACGAAGGCGGACGGTTCCGGTCCTAATACTTCC
AAGAAGAGGAAGCTAGCGGGACACCAGCGCCGTGAACAGGTGCCGACGGCAGCAGTGGGC
CTGGTCATCCACGAAGAGGTTCTAGCACCGCCGGCGGGGGCGCCAGATCCGAAATCTAGG
TCGACGGACAAACCGCCCGCCGGAGGGGAGGTAGACGGAGGAGCCGTCGACCGCATCAGC
AACCTCCACGACGATAACCTCCGCCACATCGTCTCCCTCCTCCCCGTCAAGGACGGCGCC
CGCACCCAGATCCTCGCGTCCCGGTGGCGCCACGTCTGGCGCTCCGCCCCTCTGAATCTA
GACTACCGTGAGTTCCCCTCCGGCTGCTTGCCCCCTTACAACGACACCCGCATTGCCGTC
ATCTCGCACATCCTTTCCTCCCACCCGGGGCCCGGCCGCCGCTTCTGCATCGAACCGCGC
TTCCTCCGCGCCGCGGAAGCTACCCTCGACGCCTGGCTCCGGTCCGCCGCTCTGGACAAA
TTGCAGGAGCTTGAGACCGGCTCTACTGTATGGATTACCCCGATGCCAGCGTCCACATTC
CGCTTCTCGGCCACCCTCTGTGTTGCCACCTTGAGAAAATGCAGCCTCCCTGACGACATC
GTCCAAGGGCTTCACTTTCCCCTGCTTAAGCAGCTCGGGCTTGATACTGTCCGCATCACG
GAGTTCTCGCTGCACAGCTTGATTGCCGGATGCACACCTGCTCTGGAGTGCTTGCTGATC
GACCGATGCTCAGGCTTCCGCAGCGTCTGGATCAACTCCCTTAGCCTTATAAGCATCGCT
GTGCGTCCTGGATGCCATTTGTTTCAGGAACTCATCATTGAGAATACCCCTTGTCTTGAG
AGGTTACTCCATCTTGATTTTTCCATTGGTATCCATGTATCAATAGTCTCCGCGCCTAGG
TTGCAGACCTTAGGCTGCCTTTCTGATATCACCTTGCCTACATTGGCGGAGAGCTTAAGC
GGCATTTCTGGTGGGTTTCGTAACTCAGATCAGGATCGTCTCCCCATGTTCGTGTTTGGC
TCCACAGTTATTAAGGTACCTTCCTGAAGCTTCTCGATTGCAGTGCTGTATGTACAAAAA
TCACATATCACTTGAGTTGTCCATGCATGAGTAATGTTTCCTTCATTCTTGATAAAGGGA
CCACGTGTTGATAAGCTGACAACGGCAGTGCGCACAGTCAAGATTTTAGCTGTACAGATG
GGAACTCTTAGTCTGGATACAGTTATTGAGTTGATGAGGTGCTTTCCATCCTTGGAGAAG
TTGTACATTCAGGTGAAGATTCTTCGTCGGTAACTCTTAGTTGTGTTCTCAACTGCTCTT
TTGATCTACTTATTACTTACTGATCTGAAGTGGTTGGTTGTTAATCTGTTGATGTTCTTT
TTCAGCCACGGTCAGAAGGGGAAAACAACGTGTGGCGTCGTAAGCACCGCAATTTCATCA
GAAGTTTTGATATCCCTATAAAGACAATAGCATTGGAATGTTATGCGGGCTCCAAGTCTG
AAGTTGACTTTGTCACATTCTTCGTACTGAATGCGAGGCTGTTGGAGTTGATGACATTTC
ACATTCAGTCCCATGTTTACACCACGAAGTTCCTTGCAGAGCAGGGCAGGGAGCTTCAGC
TGGAGAAGAAGGCTTCCAAAGGTGCTCAGTTTCATTTTACAGTCGGTAGATGTGTCCGCA
GTGTTTGGACTATGCATCATGTGCGTGATTTGGATTTAATTGATCCATTCGCATGTTGAC
ACTGAAGCCAGCTTTGGTCCATTTTGGAGCTATTCTTGCTTATCAACCTATCTTAAAAAA
AGAGAGGACGAATCAATAACGGTAGCTGCAGCCTAAGAAGATGACTTATGTAGATGCTCG
CTTTGGTTCCAGTAGAACATCACTAGGAACGACAGGTCGATAATATGATCTGTTGTAGTT
TATCATGGTCATTTAGGCTACTTGTGCTTGGAGTCACATTGGCTAGTCAATGGATATTTG
CATGCATGCATGGGAAATTTAGAACATTATATGGCAGTGAATATGAATGTCGTATGTTGT
TTCGTTGGGAATACCTGTCCATCGTTGGGAATACTATGATATAAACTTGAAGAGAAGAGG
TGTTTTAGATTGTAAAATGTTATTCATGAGATTTGGTTGCTAATCATGGCATTGACTGCT
TTGAGCATCATAACAGGAATTTTTTTCTCACATATAGCCTTTTTGTTTGTCCAAGAGTCT
GTCATGTCCATGGCTGTGTTTTCATGTTGCCTTGTTTCTGGGAGGATGTTTGGCTGCATG
ATGTACACTTAGCATCAAGTTTCACAGCTTGGATAACTTCACACAAGTAATTTCCTGCAT
CAATGGCCTTACCGAGCATGTTGCTGAACTGATCATCCAACTGGTCGTTGGCCGTGGTCG
TGAACCGCTGAGGCTTCCCATAGCAGTGGCCCTCGGCGTCATCGTCTGCCATGGCAAGAA
TCTGCGGCAAAGCATCCGGGATCCAATGACAGTTTGACCAAGAAGGAATTCCTGTTGTGC
AGGTTCTGGCCATCTTTCCTTTGTCTGTCAGATATCTCTTGTAGCAAACCTTCTCCGTGT
GCAGATTGTAATTTGTTTGATAATTTGTGGCTCAATGACAAGTGCTAAAGATGAAAATGG
CAAAGCTCGTTATTGAACAAAACTATACTTTTTGACCTGTGTAAACATGTTATTTGTGCA
TAAATTGTTCGAAATATTAGCGTTTTTTTGAATAAACAGTAAGCATAACAATCACAGTAT
GCAACTCATATGGATACCTAAGCATGTGAGCACATGCAGTACATAGAGCTGAAACATCTA
TGAACAGAACATATACAACCAGCACATGAACTAGTAAGTAGGCGGCAACATCGGCCTCGA
CGTCTGTGCCCTTCTTGACGGCGGCGTCATTGGCAATGGAGTCGATGCAAGGGAAGTAGT
CGAAGCAGAGAAGGACGTAGACGGGGATCGGTCGGGAGCAACCGCGCCAAGACTCTCCCC
AAAAACCTTATCGTCCTTCCGGAAGCACCTGCTCTTCCAACCAACCATGAACGCGGTCGT
CGAAATGGGATCGTCGGAAGCAGCACACTGAGAGGAATAGTAGGTGACAGCAAATGTTGC
GCAAGGAGGGGAGTGAGTGAGTTAGTTTTCGCTCCATAGGCCAATGCCTCCTTATATAGG
CCATCGGGTAGATGGGCCTGGGCTTAGGCCGATGACCGAGTTCGCAAACATCCCACGATT
CAACGTCTCGGATAGTGGCATTTTCGTTAGCGACTCGTTAATTAATCCATAACAAATTAA
CCATTCCCGACCAGCAAAAATAAGACTTGGCTGGGCTCGTTCTCGCAATCCGTGACGCGT
GCGTCGTGACGAGGCAGACGAAGGAGGACGAGCGTGCGTGTACAACTCCTCTTTCTAAGC
TTCCAATGGCATATGGTAGAGCAGCCCTTATAACAACTCCTCTTTCTAAGCTTCCAATGA
CATATGGTAGAGCAGTCCTTACAAAAGGATATCACTCTTACTGTATTAGCAGTATAGTAC
TCACTCCGTAAAAAAAAGTAAGATCGTTTAGACCACTAGCATTTAGGTCAATAGATGCTA
GTGATCTAAATGACCTTATATTTCTTTACCTAGGGAGTACTAAACTTCCTCCCAATTGCC
ATGTACCTAAATGAGACTTAGAGATTAATCAGAGATTATTATCTTATATGGACCAAAGTT
CATCTACAATCCAACATAAATACCAAATATTTCATCATAGAAGAAGTCATGTGTTCAACT
TACATTACCCAAATAAAAACGACTCATTTTACAATTCTAACCATTTTTCCAAATGATAAG
TGACACACATGTAACTCCACCTATGTTGTCTTAGCATAGCCGGTCCCAAGCCCGG