Contig Data
morexGenes
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Map Locations of contig_61471 (5180 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_61471

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72347 1 617 bp MLOC_72347.1 Available Available LOC_Os05g12580.1, FRAME:+1, EVALUE:3e-15, 13105.m01366 protein conserved hypothetical protein
MLOC_72346 2 2065 bp MLOC_72346.1 Available Available None





CDS Structure of MLOC_72347






CDS Structure of MLOC_72346






Contig Sequence (5180 bp)

>contig_61471 5180 assembly3_WGSMorex_rbca.fasta
TATGATGTGAAAATATATGCAGTGATGCATCCAATGATATAGATTTGGTGGTGTATATGT
TAATATATTTTCCTACAAGCTTATTGAAAGTATATAAAGTTTGACTTTAGACAAACCTAA
TATACAGAACTATCATGTACTACTTATGAACTAGGCATGTCAGAATTATTGACAATTGCA
TCTGTAGAAGATTACCAATTCATTCATTGCTAGCGCTATATTTTCTTCTTTTGTGATAAG
AACAACAGGCCACCTTCTAACTCCATTAGTATAATTTCAAGTATATGTTATGGCTGAAGT
TGCATCTTTAGTTTGCACACATAGAACTTGTTATGCTATTTCTTGGAGCTGCATCTTCCT
TTCCATAAACATTAGTATCATTTTTAGCTTCCCAGGCTGCTTAACCTTTTCTGAATTAGT
GTTTTGCTAAATAGAGGCAATTTTTTTCTGTTTGCGTGCGATGGTACTACCTTCCTGTTT
TTTTTAATGGTGATAAAACAAGGAATAAGACATATAATGGAAACTTTCTTAAATTACTGT
TAGTTTTATAGAACTGTGTCATTCTGAAGGCTTTGAATCTGGAAAAATGTCTGTCTTGAG
GTCTTTAATAGTTTCTGACTTGGCCATTCCTTTTTCGATCTAAACAGTGGTGTCTTTAAT
AGTTTAGTCACGATTGATGACTTCATGTTGTGTGACACTAAGGATAGTAGACTACATGTG
ATTTGCTCCTTTTATTTGTATCTTCAGCCTAGTTTGCATCGTTAATAGACTATATATGTT
TCTACTGCCAAGCAAAACTTCAGATGATAAATCTCTCGTATCTCACTTGTCAACCATTTC
AAAGATAGAAATAATGGGCCACATATAATTGAACTGCAAGGACTGCCTAATTCAATTGCA
CAGGGTGCTCTGCCGCCGTAGTTCATTCCCAGTGCACCTTCTCTTTGTCAGTGGAAGAAT
GGATAGACCTTTCAAATCACATGACATGTCTCCATATTCCTTAGATTGAATCCATGGATT
TGGGCTCAGAAATTCCTTATGTTGCCAACGCCAGGAGTTAAGAAGATGTTTGTTAAGACT
GTGTTCGGCACTCCTCCACCAGGGAGCGGAGCGCGGAGCACCCTATTAGCTACTCCCTAA
ATTACAACTGCACGGCGCTCCGGAGCTGCAGAGCGGAGGGAGTCCGAACAGGCTCTAAAT
ATGATGCTGTGCTTGACATCTCTCGGGTTTCTTGTTAGTTATATTAGACTACCAGTGCCA
GCACAGTGTCAGCCATCCTCCAAATCGATCTGGATATGGTCGTTCCAGTTGAATTAATTT
CTGCGGATGTATATGAAGACATGGCGAGAATATGACACTGACCTTTTGAGATTTTTGTTT
ACAGGACGAGAAGACGCGATTCGAAAGTATGAAGCAGGGCTACTAGGCTGGTTGTGTTGG
ATGCGAATTAACGTGAAACCTTCCTTGCTAGTCGATGAGTCTCTGAACTCCTAGAATGGC
ACGTGCGACCGGGATTGTGTAAGATTGTACGGTCGTTAAACATGTGTTGGCACTTGATAC
ACCTGCTAGTTGAATTGCTCGCTCTTGTGAGGTTGGATAGTGAGACTATGGCACGTGCGA
GATGGGGTGATCTTTACAAAACTGCGTGGATTCTCACATGTGATCATGGAAACCGACTGC
TTGGAGATTGTAAATCTCTATAAAATTCGTCACTATAGCTTATCTGTGATGGCACCTTTA
CTATTAGAGATGAGAGAGCTAGTTTCCTCTTTTTCTTTTTTTGATATTCAACATGTAAAT
CGGTCATCCAATGTATCGGTCCATCTTTGTGCTAAGTTTGCTTGCACGCTGACCACCGAA
AATTGGACTGACTCGAGACCATCTTTTCTGCTCACCAGCCTCTTGGCTAATGATGCCAGG
AGTTCTTTTGTTGAATAAAGCTCTCTGATTGGAACAAAAAAAAAAAAAGGTACAGACCGA
GTTTGGAGGGAGTCCTTGGATCATTTCGCACTGCGTGAATTTTATGAAGATGTATTGTAA
CTTGGCTTAACAGACTGTTCGTCTTGTGGTCGGACTTTGTTTGCTCTGCGACCCCAGCGC
AGGCGTGAGCAACGGCCGCTGGGGCGAAAATGTCTGCTTAGCCTGGATCACGAAAACTGT
TGATTTGATTTTCGTACTTTTGTACTCCAGCTGCAAGTACACGCTAGCAATATAATGCGC
ATTAATCAAAACTTGAACTCTATCGGTGAATCTGATTCGGCGTCTCGTCCAACCAAACCA
GTAAACAAACGGGAATGTCTTTGCGGCCAGATGATTGCGAGCACAAAGGAACACACAGCC
AGCCAATCTCAATCCAGGATCCAGACTGTAAAGACGTTAAAAGAAATTCGGCAACGGTCG
TCCATGTGAGCGGGCCCCGGCGCTGGCGCAAGACGCCATCGCGATCCCAGCGAGGTCCAG
CCAATTCCAGGAGAGGGGAAGAGAGCCGTTATATAATCAATCAATTATCAAGGGAGGTTA
TATAATGGCACAAGAAGCGGCAGAACGTGAGGACAAGGCAGAGAGCCCAGGAGAGGGATA
GAGGGCATCTGTTCATCCAAGATACGCCGCGGCTGGCATGGCGAGAACCCTCTTTGGTTT
TGTCGCCGCCGCCGTGCTCCTCCTCGCCGTCCTCATGCCGGCCCTCGCCGCCGCGCAGGC
CCCCGCACCGGCGCCCACCAGCGACGGTGAGCCATCAGACTGTGGCGTCTTCCCTTCTGA
GTTGCTTCTTTCCTTGTAAATTTCTTCTCACTTGTTTTCTTGCCAATACGTGCAGCGTCT
TCGATCGACCAGGGCGTCGCCTACCTTCTGATGATCGTGGCGCTGGTGCTCACCTACCTC
ATCCACCCGTTGGACGCCTCCTCCCGTTACAAGCTCTTCTGAGCCTGTCTATGCGCAGAG
GGTTCTCATTCTTTTGTTCATCTTTCTCTTGTTCGTTGATCGATAAGCTAGTGGATTCTT
GAGAGATTCGTTGTGTGAGATTCGATTTGGATTCATTAATTTGTTGTTCTTGTACTCTAG
TGGATTCGCACGCGCGCGTGCATATTTTTGTTTCACCATGTGCATGTTGTTCCAATGCTT
TCTCAGGTCTGTCGTCACTAGTTATGCGTATATTAGTCATTAATCCGTGTCACAGCACGG
GCTGGCAATTCATGAAGTATGCAATTCCATAGAAGAATGGAAATATAGGTAGAAAATTTG
AAGAATATTTTTTAAAATGGTTAACATTTAAATATGTAGCAGTTATTCTGGTCATCCATG
GGCCAAAAAAAGGGAATTACATTCTTTCAATTTGGTTCTAATTAGGGGGTATTAACTGAA
CTGGAGGAATGACGATGTAGGTCATATGAACAATACTTGGCTCTTGGCGACTATAGAATA
TGGAAAATATATCCTTCTCTTGGAACAAAATTAGAACTTATGTTGAAGAACCATGCTGGA
CATGAGTGGTACAAATGCAAACTTTAAAAAAGTGGTTTTCAGTGTAAATAAATGAATTAT
TACAGTAAAAAAAAATCAAACTTTTACTGCTAATTGATTAAAATATCTTTATACTGGCAA
GATGATGATAATACTAGTAGATTTCATTAACACGCGCCTTCGCTAATTCTGTTGACGAAC
CATGTAAATATAAAAAATTCGTGTGTCAATGTGAACTGAAAATTGTGATGTTGAATTTGC
ATGTTTGGTACAATCAAATATATACATCTATCACTCATAAATAGATGACTTCCTAAAATG
TGCATTTAAACCTTTTCAAACTTTCAGTACTGATTGGTAGAAATATGCTTATTTTGATGA
GATGAAAAATTGGTAGAAATATGTTTATTTTGATGAGATGAAAAATATTATCATGTGGGG
ATCCCGATCCTAAGTCACAGAGATCTAGCATGTAACACCTCATATGGTTTTATGGCCTCA
CGCACGGTACACAACGGCTGCCACCACAGAACCCGGGTGGACATGACTAGTTATAAACCC
AAGTGACACAACCGTACATGAGCAAACATACATAACCCAACAATGCAGGTGTCGGTCATC
AACGTGTGTAGACAAGTCGTAGCAAGCTATACAGACTCCATTACACCGCATGCCATTTCC
CTCTAGGGACAAACACAACAACAAAGAAGGATACANNNNNNNNNATCAATGTGTCCGGAG
CAATAGCAAGTTACCATGGCTCGGTGGAAGCACAAAGAGCCATTTCCCTGTAAAAAAAGA
CTACCATAGGCACACAACTAGGTGTCGAATCCCCACACATACCAATGCATTTCAGACATA
CACACAATATGCATGGTATGTGTAGATACAACACGGCATCACAACTTAACTCTACAATAC
AACATTTATTTAGAAGGCTCCGAAGAGCCAACATAGTATAATGTTAGAAGAAGGGGTCAC
GAGACCCAACATTGAGAGCATACAAACAGCAAGTGGAAGTTACATGTCTGGATACAGTCA
TCTACTAAAAACAGCTGGAGGAGTCTGAAAAGCTACACCGACCCTACCAAAGAAGCCACG
CTACTATCTCGGTTCCCAAGCTAATCGTCGATGTAAATAAGCAACAATGAGTATGAAGGT
ACTCAACAAGACTTACATNNNNACTATCTACATATGCATCATGTATCATTGAACGGGGTT
GTGGGGTTTACTACAGAAATGCCAGCTTTGACCTTTGGCTAACCTAAACTACAACAAAGT
ATCCTCCCTCTCTCGTCTCCCTACGAGAGAGCGCACACGAGTCCACATACTCACCACATC
AATACACCACTATGGACCCACTCCTGTCTTCCTACGAGAAGGCCATCCATATCGCTCACA
CTTATCTTGCGCATTTTATAGTATCCATTAACGTTATCCATGAACCATGTAAGTTTCCAA
GTAGTCCATATCTGCGGACGCGGCTATTCGAATAGATAGTTTACCATGTAGGTGTGTACT
TCATCACACACGCTCCCACCACTCATCGCCCTTTACATGTCATGTACTCGAAAACCTTCA
AGCGGAAGCCTGACATGGGTGTCGGCCAGAGACGCTAACTTAAATGACTCACTTTCAAGG
TAGTCACCTATCTGAGTTGGAACCCATAATGGAAGTTTGGCCGAGGTTTCCAACATGGCC
TCAAACGATGCGAGCAGGGC