Map Locations of contig_61453 (9078 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_61453

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72337 1 257 bp MLOC_72337.1 Available Available None
MLOC_72338 1 650 bp MLOC_72338.1 Available Available LOC_Os01g09510.1, FRAME:-1, EVALUE:5e-28, 13101.m01011 protein 60S acidic ribosomal protein, putative, expressed
MLOC_72336 3 1019 bp AK355094 Available Available None





CDS Structure of MLOC_72337






CDS Structure of MLOC_72338






CDS Structure of MLOC_72336






Contig Sequence (9078 bp)

>contig_61453 9078 assembly3_WGSMorex_rbca.fasta
CCCATGTAATTTTGAAATACCACTTTATAGGCTGTTTTTAGAGTCCGTACGTGTGGGGAA
ACGAAGTTAGGGTTGGTTTCGGACCCCTCCTCCAAAGGGTCACGAAATCCCCCTCCATTC
CCCCATATATACATCCCTTAGGGCACCGTTTAGACNNNGGTTTTGTTTAGATTACAAGTT
CGGCATAGCTGCAACTTGGCGTTCTTCGTTTGTGTTCTACGACCACAGCAAGACGTCATA
GAAGCCCACTTTCATCCATAAAGCTTTCCTCTTATATTCGGGATATCCAGAATGCAATTT
CAGTTTCTTGTTTGTTCTTCGTTCGCGTGTAGGAAAAAGACCCTCGTGGTCACGTTGATC
GTGCTCCGCATGGTCAATAACCTCTCGGAGTTGGTTTAGCGATTGCTAAGCGCGACGACT
TCGCACGTTAGTAGTCGGATCGTTAAAGTCTACCTCATCAAAAACGATAGCCACCATCTC
ATCGAAAGACAAGGACAACTTCGCCTCTATCACCCCGTTCCAATGGTGTTTCTAGCATCG
TCGGAGGGTGTGTGGAGGTTTATCTCATGTGGATCTCATGGAATTCGGTCGGCGTTTGTT
TTCGGTGGATCCATGTGGGTCCGGTCTTCATTCATGTGTGTCCGTGTTTCTATAGGTTGG
ATAATTTCGATCTACCCTTCTCTTCATCGACGACGGTTGTTGTTCTCATGCGCTGGTCCT
ATAGGGCCTTAGCACGACGACTTCTAAACTATCTACTACCACAAGGTTTGCCCAGCTCCG
GTGACGGAGGGGCAATGACGGCGGCGCACCTTCACCTTGCTTGAGTGCTTGCATTCGTCG
CTAGATGGTCTACGAACCTGAATGTATTTTTACTTCTGGTATTCTTTGTACTTCCTTCAT
AACTGATGAATAGATTGCAAATTTTCCTCGCAAAAAAAGTTGAAGGCATCTTCAACAACG
AATCATAAATTCCCTCAGGTATCCCACCTCCGAGGACACGGCGGACCAGTTCGCGAACAC
AAATACACGAGGCGGCCATCCAACGTTGCACACATACATTTGACATGCCTATTTTTTTCT
TTTTGGAAGGCTGTAGGTTCGAATAGCCGCATACATAGAGTTCAGGTGCTTAAAAATAGC
CTCATATGTAGAGTACATACGTTTAAATAGCCATATAAATTTTAAAAGTTCAAATACTAC
GTTCCAACAAGATCTTCTTTCAACTACTCATGAGTTAGACTGTGCAGTTCAAGGGTCGGT
CTTGGTCCGAAGCAGTTCGAGGGTCAGCCTTGAGATGCCGTTACTAATTTGTTCTTTCAA
ACTGTACCAACCTATGCTCCAAGTTTACAAATGTTTCAAATTGAGCTAACCTGTGCCCTC
AAAACGATGCCGTTACTAATTTGTTCTTTCAAACTGTACCAACCTATGCTCCAAGTTTAC
AAATGTTTCAAATTGAGCTAACCTGTGTCCTCAAGACAATGATCCCAATTGTATTAACAT
CTGCTATGATCCGACTGTATATGCTTCCAAGTTCACAGTACCAACCTATGCTCCATGTTT
ACAAATGTTTCAAACTATACTAAGAGCAAGTACAATAGAATAGTCAGCTGCTGGTTATAA
GCCATGGCAATCAGTTGCTAGTTATAAGCCATTGCCATGTCATCTATAGTGAGCACGTTC
TATAGCTGGCTCTTAACTAAGATCCCGCTTACCTTCTCTCTCCTCTTCTCTTTCCTCTAA
CTAAACAAAAATATATTAGTTTACGGTGATCCAATTGTATTAATATCTGCTATGATCCCA
ATGTACCAACCTATGGTAAGTATACATATAGGATTAATTAGGCTGTGCTCTCCTGAGACG
AAACCACGGATGGGGGAGAGATAGCCACAAAGAGAAGCTCAACCACCTAGCCATAAAGTG
CATCCTGTACTAGTCGGAATCTGTTGCTCTGTAATGACGATGACACAGAGCAGTTTCATA
TAGGAGTTGCAACCATTTCAAGAAAATGTTTGGCAATCATTCAGGTCAAGCTGGACCCCA
AATTAGTTTTTTGCAAAACAGTATATCCCGGAGGTAGCCCGTTTGGCTTACGTTTTAGCA
AAGCTGAATTTTCTGAAGTAGAGCATTCCCAAACAGGCTCTAAGAATGTGCCAATTTACA
AAGAACTTTTAACTTTGTCAACCAAAAAACTAGCATACAACAGGGGTAAGCCAAAGAGCC
GACAAAACATATCATAACAATGCATTGTTAAAGCACCAAAATTGGATAACAAAGGTATGG
TTCACCAGTAAATCAACCAGCAACCAGAGGCTGAATTACATATCAAAACATTGTCTTGCC
AGCGTTTCACAACTCAGCTAAATAAAGGCTAAAACATCATTGACTCTAGTTCCTGGCCAA
AGATAGATACTGCAGACACAAGATACCCAAGCATCTAGTCGAACAGACTGAAGCCCATGT
CCTGCAAATAGAGGCACATACAAACAGTTAGAACGTTATCATAAATAACTACAGAATAGA
CATCAAAACATTAATATGCCCAAGTTCATCATTTGCAAGGCCTATTAATAGAGATGACAA
GTTCCTAACGAGAGGATATGCGAGAATAGTGATCTTACATCGTCGCTCTCTTCCTTCTCC
ACGACCTTCTCTTCTTTCTTTGACTCAGCTGCAGGGGCAGCAGCACCTCCAGCAGAGGGA
GCAGCAGCTGAAACAGCCACGCCACCACCACCAGATGGAACCGCAGCAAACTTCTCCCTG
CCAGCAGCCAAGAGCTCGGTGATGTCCTTGCCCTTCACTTGGCACAGCATGAGTTCCATC
TTCTCATTGTCAATTTCACAACCAACTGCAATGTAGAAAGGTAAAAGTAACATTAGAAGC
TGACACTAGAAAAATAAGCACATTCTGTCCAATATCAATAGAACTTATGCAACATTGGTA
ATGCACACTACAAGTGTAGTGTACTATTGGTAAACATGACATAATAATACAGTAATAATT
AGTAGCACCAAATGTAGGAACCACAGATGTATTTGCAATAGAAGAAAACCGCAGAACCAA
AACTAATATAGGCCACCCGGTTAGACAAAATTACCAGACTCAAGAATGGATGTCAGGTCC
TCTGCAGAGGGGCTGGCGTTGCCAGAGAGGTAAGCAAGCAGATAGGCAGCAATGAACTTC
ATCCTGGACAAATAGCAAATAAACAAAATAAGCTTGTGTGACCTCAACGTGACAGGCAGC
TACAAAACTGTGAAGTTATCAACCATCTGACAGAAAACAAAAGTCCCAATCAACTCAGAA
CATAATTGCCGAAGCATCAGTGATGAACACGAACTAGAATCTACATCAAATCTAAGTAGT
TTTTTCCTTCAAATCAAGACAAATAAGAGCATTTATTTGGTAGTACAATTTACGATGACA
AAGAAAGCTATCTACATTCCAGCAAGAGCCACGTAGTGCACATTCCATGGCAGTAAAATA
TTAGCATAGCATTCATTCATTATTGGATCTACGAAACTGACTAGCAAACTTGCAGCAATC
ATACTAAAAATGTTGTACTGAAACCAGAGCCTAGTGACAAGGTACATCTAGAAACCGGTC
GGGAACAAGAACAACAGCGGACACGCAAGCAAAAACTGCGACTTCTTATCACAAGGCCAA
ACTAAAATACCATTTCATCAACATCTAACGGAGTGCAGCACACTAACAACACCAGCAAGT
AGCATATTTTGCGTCCAGCAAGAAGATCATATCGACGGGCGGAAGTACAGAAGCGCAAGG
GAATGAACGGGACGTTACTTGGATCGAGAAGGCTGAAGGCGCAGCGGCGGCGGAGGGCTC
GGGCGATCTGCTAGGGTTTCTGCGAGTAAGGGGATCCCGTGGCTGCGGCGGGGCTGCTTA
TTTATATAGACCCACGCCGGGTCGCGCTGCGATCTGCGCCGTCCGTGTGCCATTTAGTTC
CTGCCCTAGCCCCCGCCCTGGCGTTCCAGCCGTTGATCTCAGCTGATCGACCCCCCTGGT
AGTAGAGGAGTAATAATGGGCCTTCGTGCTGCTATCTCGTCTACTAAAACATTCGGCCCA
GTTACAGCTTTTATAGGCTTTTGAGCCGTTTACTTGGCCCAGCAACCGTTACTCTGTGTT
TCAATGAGAAAGCAGCCCATGAGTGTGTCACTGAGGCATCAACCCCCTGTTTCCTCTTGT
TCCTCCCCTTCGGCCTCCGGCGCGGTTGGTTGCCACGACGAGGGGCGGACCCACCCATCC
ATCGGACGAGGTCCGGCACGGGGCATTCCAGCCGGCGGTGCGCCAACGGAGGCAAAGCGG
TGAGTCCCTCTCCAATTTCCACTGGTTCGGCTGAGATGATTTTGCCCGAATTCTGGAGCC
GTGTGTTCGTGCACGTGAGGTGTTTGACGGAATGGTGGCTGTGGGTGCTGATGGGTCTGT
GCAGTGGGAGCTCGCGGCGACGTACAAGGCTGGGTGACAGTGGAGCTTGAGACGGACAGC
CAACTCCGGCACCGGCCCCCTCTGATCTATTTCACCGGCAACCGCTGGAGCTGGTAGCCA
TATCTGCTGCTTAGCTTCCCTTCTCACAGAGTGAAACGAGCCTAACTGTTGTTTTGTCCT
TGGCGGACTGCAGGAAGTTGGTCAGCGTTAACTGCTTCAGGCTTCTCGCCGGCGTGAGAA
GTTGCTAGGTCACCATGGACGGTATGCGCATACTGCCTCTCCCACCCATTACTTTATGTT
ATTGTTACTCGCCATGCATAACTCGTGTCAGTTTTGGTGGTTGATCATGGTTTACTGCGA
ATGTGCATTTTTGTAGTATGTGTAGTAGGCCTGGGATGATTTCTTGATGGGCGCCCTAGT
GGCATGTTTTATCCTTGAGCTGTGCCTAGTTCATCTTGGAGGTAGGAACCACAACTTCTG
GGACATTGGGGTTATAGCTGCATACTAGTAATGGTTCATTGCTCAACGAGAAAAGAAGAG
GGAACCGTGTCCACGTTTTGTCTCAGCACATCGAATGGCATTTTTGGTTTCTAGAAACAG
TAACAAATGGAAAAATTGAAAATCTGTGAGTAATAAAAGGATGCTCCTTCCGCTTATTTG
TGAGAGAATTAGATTCTTGTTTCTTCAGTTTGCTACTACATATGCTCGCGCCTATTTTTC
ATTTTCTTCTTTTCTGGGGAATGCTTATTTTTGTCAACAGTCGATAGACAAGAAACGATG
GAAGAGACCATTCTCGTCGGTGATGATCTTATGCGTGGGCCACCTTCTCCTGTCGTACCA
AAAGAGATTGCATCCCATGTCCTTGAAGGTGTTGAGCTTTGTGATGGCATCCTGAAGAAT
CTTTTCCTATGTGAGTAACTGTTTACTCTGACATCACAATATGTTTGTCGTTTTCCATAT
GTAAATATGTATGGACAAAATGACTCCTATTTCTGCTGTCCAGGCTTGCAAATCAATGAT
ATTGAGCCATTTTGTCAAGACGAAATTGTTCTATACAAACAATGCGCTGAGAAAAGGGTC
AGTTATACTAAAACTATTTGAGGCTGCAGCTTCATTCCTTTTCCTGTTTAACCAGCTGAC
CCATTTTCTGACTTATTTTTACAGGATAAGGAAATAAGGGAACGGCTGCAGGATAGTGAA
TATAAATTGGGTTTCTCGATGCCCCTTGAAGATGCAAAGGAAAGAGTCACTCAACTCCAA
TCAGAACTCACACTGCTTGAAAGGTAGCCTTAGTGCTGGTGGTCTTTATCATAGATACAT
TCCTATAGATGTGAAACGGGTTAATAGACTTCTGTTCAACTTCGTAGATTAACCTTCAAG
GTTCATTTTTTCCTTTAGAATTTTATAGACTGTGGTAAAATGTGCATATATCAAATTCCC
TTTGCCCACTTGCCAATCTGCATCAGCAACTAGATTAAGACTTAAGGGCGTCGAGAAATG
TAGGGAGATTTCTTATCCAACCTCCTTCATATCTCAATTGCTTAAAGTGGATAATGATTT
TAAAAGCTTCACAAGCATCCAGTCTTCATATTTACATCTTGTTTTCTCATTTCATTATCG
CCAGAGGGCCAGAGGGTCACCACTTTTACATACTGTTGCCATGATAGTGTCCATAAGTAC
TGAGTGGTGTAATAACCTCCTATAGTCATTGGATTGTCTAAGCTTGCCTTCATTCATTGT
GATTCCTCAGCAGCTAAGGTTATTTTAGTTTAAAATTCGTCTCTTGAAGTCATTGGTGTT
AACACACTGGATAAATATTTGTTATCTTCATGCCTGGGCTGTTGTACCTACTGCTTGGGC
TTGTTGAGAGAGAGGGATGGATGGAGGGAGTCAGACCCAGTTAGCAAGCTCCCAGTGTCA
GTCAGTGTACGAACAGAAACAAGCTCCTGGTAGCGCATGGTTAATTCTTAATTGCTTAGT
CATCATGTACCTAACATTGTAATTTAGGCCATGGTGTTCTACTTGACTACCTAGAGGCTA
GATATAGGTGAGAAGAAAGGCTTATAATTTTCTTGGGATGTTCATGCAAAAGACTTTCAT
GTACACATCAGTATTCCCATATTAATTGGTTATAGCATTTGGTATTCCCCCCATCCGGAA
GCTGCCAGAGGTGTTCTGTGACATCAGAGACTTGAGATAGCACATGGTTCTGCTGGCAGT
AGTTTGGTAGGTCTTCCCTATTTCTGGTATTCCTCGCTTATGAGCAGCACTAGTTCTCCA
AAAGGAAGGTACTTCTGGATTACTTTGTGACCATTCTTCAGGGCAGTACTAAATGGATTT
ACAGATTTTTAAAGACCACTTTGTTGTTCCCAAGATATATTTATTTTGTTTGTTACCTGG
ACAAAAGGAAGCATCGGGTTATTTATTCATAAATTATTTTCATAATTATTTATCCAATAT
TTTTAGGTTTGCTCCAATTCCAGTCTGATCATGTCCTTCTATTTTAGGCGCATGATTCTT
GCTACTGGTCTTCAGGGTATGGAAGGATTTCGCCAACGATGGAGCTTGCATGGACAGCTC
GGCGATACAAGGTAATTGTTTAAGTAGTAGAACGAAAATATAAAAAGTGTGTTTGCTTTG
AGTCTAGGTTTGCCCCACCACATATTTGGCTAGCCAAAATATTGGTCAAGGTTTTGTGTG
CCTGTGGGTTGGCCGACTTTGGCTAAAAATATGAAGTACAGTTGGTAAGGAGCCATTGGC
ATGCCAAAATATTGGCAACCATCCAAACCAACACCATAACCGAAAAATTGGTAAGGTACA
TGTTGGCTATAAACCAGACATACTCTTATTACTTTTCTCATTTGTATTGTGGCCAAGGAG
GAAAACTTTCTAATTTTGCAGTTTAGGAGATAGAATACTCATCGGTAAACTATCTATTAT
GTTTTCATGCTGCTGTCAAAATGAGAGTTCTGCTTCTCTGTTGTCTCCTTAAAAGTAAAC
TTGACAGTGTATTTATTGGTCTGTGATTCTTCCCTTGTGGCTTCCTCTGCTTAGTATTGT
GAAGGGAAATGATTTTAAAACGTTAGTATCCAACATACCATAGATTATTTGCAGGGCATT
TGGGTAACGCAGCATACCATAGAGCTCTTGTAGCATTCCAGGTGCTGCATACCAGAATAT
CATTGGGGATTACAAAACTGTTTCGATGTTTAGTCCAAATAAAATTCTCAGTATTTCAAG
GGCAAAATGAACTTAATTATTCTGTTTTTTATATGTCCAACTGGTGTTTTTATTTATTTA
TGTTGCTATTTTTTTCTGCAGGAAAAGGTTGGAGGCGCTGAACAGTGGCATGGCAAAAAG
AGAGAGCCCAAGTCCTCCAGGCGAAGGCACAACACCTGCAGTTAAGAAGAGGTGGTTCTT
TTAGTATTTTTTTCCGACTTGCAAAACATTGTCACTGATGTCGTGTTAATGGCAATGTCA
TCCACTCATATATTGTCTCCGTCCCAAAATAACTATCTTAATTTTGTACTAACTCTAGTA
CAAAGTTACACTAAGGTTAAGACACTTATTTTAGGACAGAAGGAGTATTTATTTGGTGTT
TCTACCTCCAAAGCAACTTCTGTACTGTGTTTGCTAACAGTGGTTTCACCACAGCTGCAC
TTTTTGGTTGAAAATATGGAAATACATGGCCTGTAAACCTTGAACATACCATTTGGATTA
CCCACGAAATGATGATATGCAACTCTTCCCCTCTCTTGTGCACATATACGGACAGTCTGG
ATTGTTTCTATCATCGGTGGAGTAAATTGACCGATGCACTCAATCCGTATAGTGGTAGTG
TAGAAGCTGCTATGTGTGGGGCATAGTAATAGGGTTTAGTATTGTGGAATATGCAAGCTT
CATCCAACTGTCCGATTAATATTGATTCAGATGTAACGGACGTAGCTTGGAGCAACTTTC
TAAAGCAAGATAACAACTTGACACCTTGTGCTCTGTTAAGATGAACCCTAACCATGTTCC
TCTAAGGTGCCTTTTTCCATGAAAATTGTATGTACCCTACTCATGGTCCTCTTCTTGATT
ACCTCCAAAGTCAGTCATATATAATCCTCCACAGGTATATAGTGCAATCTTTGGTGAGCA
TGCTATATCTGAATCTTGGTTTCTTTCTGAAGAAAATGGAAGCAAAGTTTGTCCAAGCTG
GCCATGTAGATTATGTTTAGCCATAATAACGTAGAGCAGGTGGCACTTGACACCAAGATC
GAGACCAAGCGCCCCGGATTTCAATCAACCGTTCGCCGGGACGGCAAGCGTGGAATCGTT
TCATGTGATGTGGCCGGGGACTAGATAGCCGAGAGATCCATCAAGCGGAGTTGACTTGCC
GGGACTTGATAGGTGAAAAGCCATGCGTGGTTCCGACGACACTCGTTTGGTCAGCGGCAA
TGCGCCCTCTTCCCGGGCTATAAAATGAATGCGTTCCACGCCTTGCATCACCACACGAGC
CACGAGCACCCGCAACAGCTTCACTCAACCAGCAGTGAAGGAAGTGTGAAGATCACCCAG
AGACCGCCTAGCCGTGATCGATGGCGTCCGTCCGGCGCTCGTGTGCGGTGGCGCTGCTCG
CCTGCGCCGCCGCATTCC