Contig Data
morexGenes
Links



Map Locations of contig_61434 (6872 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_61434

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72321 8 2071 bp MLOC_72321.2 Available Available LOC_Os01g42630.2, FRAME:-2, EVALUE:3e-145, 13101.m04382 protein C-5 cytosine-specific DNA methylase, putative, expressed





CDS Structure of MLOC_72321






Contig Sequence (6872 bp)

>contig_61434 6872 assembly3_WGSMorex_rbca.fasta
TTTCTTGCATCAAGGGGCATCTTCACAAAAACCTTAAGCCATAGCATCTNNNNNNNNTTT
ATGAAATATACTTGGAAAACACATTANNNNNNNGATGCATATGTTGTGATCAATTAGCAA
AACCATCCTACGAAGCAATTGTTCTTTTACCTGCGCCCTCCTCGCCCAGCGTCGTTGCCT
CGCAGACAAGCCGGCGCTTGCAACGTCGCCTCCTCGCGGCCGCCAGCAAGCAAGTGGTTG
TCACGCCACCGTCCCCCACCCGCGCTTGCAGCGTCGCCGTCCGATGCCCGTGCGTACATC
ATCGCAGTCCCGCCACCGTCCCCTGCCCGCGCTTGCGGCGTCGTCGTTCGATGCCCGCGC
CTACATCACTGTCGCCCCGGAGCGCCACCCTCCCGCATCCCGCGCCCGTCGGCAAGGCAT
TGCTCGTCGCGCCGTCATCCTGTGCCCACGCCTGCAGCGCCCGTCGCCCTCGCCCATCGC
ACGCTCTACTTGCAGCGCCGCCGCCCACGCCATCACTGTTAGCTGCCGCCTACCCTTCCC
CCGAGGCACGCCGCCGCCCTGTGCCATCATCGTCGCCTCCCTTCCCCTGAGGCACAACGC
CGCCTCATCATCACCGTGGAGCTTGGGCTCGTAGACCACCGCCGAGCCATGCCGCCGGTG
CATCCAGTCGCCGCCGGTGCATCCAGTCGCCGTTGACTCTTAAGGAAAAGAAAAAAAAAT
GAAAATAGATGAGAGGCTGACTGATGGGGCCATCTTCCACCTCAACATATTATCTAGGGA
GGCATGCTAAATCAGCCTAACAAGTGGGTCCAACCCGTCAGTTTCACTGTTAGACGCGAC
TCAATTCCGGATTAGTGTTTCTTGTTACTCACTTCCCACAGAAGTGGTGGTTATTTGTGA
TTTTCGACAAAAGTGATGACTTTGGAGTACCCTTGCCACAATTGTGGTGGTTTTGAGCAA
TTTTCTCTGCAAATGACTACTACTTAACTGAAAACTTGGACGCGACTGGCTATATTGTTC
ACAGGGGTTGAACAGAAAAAAAAAAAGTTCAAAAGCCAAGACTCGTGCGTTGTCCAGGTA
CAGTGGGATTTGATTTGCATCCATTTCTTGCGCGCAATACGATATGTCATCACAAAGTAT
CAAATTACACTTGCCCTAAAAAAATATCACATTACTAACTGCACCTCAAAAATATGGTTG
TGGGTGAAAGGCACAACGTTGGACTGGTATTTGTATACGGAGTAGATCCAAAGGCTGAGC
TTCGTCCATACATACCACCTTACTTTGCACGCATCCACCTCTTCACTATAATTCCTGCTA
GGCCATCGGCAGATTGATCGCAAGTCTTCAAGCTCGGTAAACTGCATCGGGGCATGAAGG
ATGAGCATGGTCACATATAGGAGACACACAGAAAAAAAAATGATGGATAAACTATCGTAC
TTGCAACTCAAGTATGGCAAGATTTTTGACAAATATCAGATGGCGCACCAAGGTGAATAT
CACCTGCCAAATGATTGAGAACTTCTCTATGCCCCGGCAAACAGATAGCGCAGCAAAGGA
GCCACAACCGCTACACTAAGACTATTACCCAGCATGGCATACCTACAAAATGAGCAAAGC
GCCATTCAATAGTGGATAATGATTTCTAGAACAAATGACTCATTCTTTTACATTATTGTT
GGATGAATCATGACCAAAACATATCTTCCTCAATTCACATCACAGAGGGAAAGGTGGGAT
TAAAAACACTTACTGCTGTCTGAGGCCTATGTGATCCGGAAAACGGAAACTCGAGGGAAA
AGAATGCAAATTGGCGACCTGAAAAATAAAGGAATACCACATGCTATGAATCATAAGAGA
ACAGAAGTATGCAAATGTATGTGAAAGTGAAACTATGAGAAAGTATTCACCTCTCGAGGT
GTGAAAAAACGTAGACCCAACTCATTTAATGAAGAAATTTCAAGGTTCTCTTTTGGAACT
GGTCTGACGTTCTATAATTTGAAGAACATTATCACAAAATAAGGAACAGTGGAAATAATG
AGGTAACACCAGAGGGTGAGTGGTGCCAAAAAAAATGAAGACTGGAACTAAAGACAGGCA
AGAGACTGTACAGAAGAACCTTACTTTAGATGTAGCCAGTACAGAGCCTGTGCCCTTCAC
ATAGCGATAATAACTTTTAGTAAAACAGCAGCACCGTTTTGATTCAGGGTATACAATATC
TAACAAATAGTCAAGGATTCACCAACTCACCACAGTCAAGCATTAGTTAACAAAAAGGTA
GCAATAACATGTATACAGAAGTACATTCCTACTCATTATGAGGACAAGTGTCAAGAAGGA
ACTAAGGATACCCATAGCATTTCCCCACCGTTCAATCAAGCTTAGCGGAACTGTGTAGTC
CTGTGAAGCAGTTTCACTCGGAGTGCATCCATGAGCCTCCTTAACTACATAATAGACAGT
GGCGCTGAAACTATATTGGTGGACCTGCTGCTTCAAACATCCTGACAATTTAAATACAAA
CTGCAGGCATGTACTTACAGTCAGAGATGATGGCTGAACACTCCCCGTCTCCAATAACAA
TACTTTGTGCTTCAAGGAAGTTTCTTATTGGATTACATACTACTTCCAGATCATCTTCAT
TCTGGTCATAGCTATTCTGAGCTGTCGTAGCGTTCAATGTTAGGAATGTAGGTGTCCTAA
GCAGCTTCTCATTGACTGATGGATTTGGAAAACACATAGGTTCCTGTTTCGCCTGTAGAT
AAAGTATGGTTAAATAGTTATGGAATTCCTCAGGAACTGTGTCCTGAAGTTTCCCACTTC
TGAAGAAACTGGAAACCCATAATAGTTTCCTATGGTTAGCTATGATCTCTTCTAGGTGCT
TGGCAAACTCATATTTGTACCAATTATAAGCAACATACTCCTTGAATCTACTCAAGCTCA
TTATGCACATTTGGGGGCTTCAGGAGTGATGAAGAATTGAGATGATAACGGAAATAAGAT
CCATGACATGTTGTGGCTAAGATATGCCGACTGATTGCAATGGAACAACAGGCAGATGCA
CAAGTTCTTACCAAACAGAAGTAGCGCGGTCTAGAATATGGGACACCAAACTGCAAGGGG
CTTAGGATGAATTCTTGTGTGTTGAAATTGAGAGTTGAAAGGACCCCTAGCAACTGGTCA
TGTGTATCAGACACCTGTCACAGGCAACTGATATTGATAGAGGTCCAAATACTACAGTCA
ACTGTGTTTCAAATAATTTTAAGCTTAAAAAAACCTCGAATCCGACAACATTCTCCACAA
ATAACATTTGTGGAGGAAAGCTCATGTTTTGCATAAGGCTTAAAATCTTTATAAATGAAA
AGGCCCGGGCATCAGCTGAGTGCTTCTGAAGTCCTGCATGGCAATCCACCCATATTAGTG
AAATTTGAAACTGAAGCAGGTAATGTCAAAAGGAAGCTGCTCCAGAAGCAAACCTTGCCG
TGTGTATGGTTGACATGGAGGAGAAAGGAGCCATGCATGTGCCTTGTACTTGTCTAGATC
ACCAGCAGTGAGTGTTTGAATGTTTCCCTGCAGTGACATAACAGTACAGGTAGTGCGGTC
AAAATTAACATGTTCCTTCGCTGCAATATAGTTCAGTAAAAATCCAACCAGCCTATAGTC
AAGTTCTTTCTAACAATGTAGTCAGTTCAAATAAATTCACCAAGTATTCCTCCAATTTAG
TAATCACATACATGAGCAAATTATGCATAGAACACAATGCATACATGCTAAGAAGGGTAC
TTGCGGTGTCAAAAAAAGAATTTGATGCGGAGTTACAGTCCTTAATCATCGCTGCTAGTC
GAGATACTACCGGTATCAGGAGAATATATACCAGTTTCCTCGCCTAAAGTTTTCACCACC
ACGAATCAGTAGTGCTTAACACAGCAAGAAACTTCCGGTTTTCGCCTAGATCCATGTTTG
CTAGGGCTTATAGATTTCTGGGGGAACGGAGCGCACCTGGCAGGGGCGGTGGGCGAAGTT
GTGCTCGTATACGTCGTTGGCGACGTCGTTGATGTCAAAGGCCTCCACCACCTCCGCGCG
AACGCCCGACGATGCTAGGGAGTACCGCTGCGAACAAAGGAGGCGGCAAAACAAAACCCT
AGTCGCCGTTAGATATGCCGCAGGATTGAGGTGAAGTACGGGAGTAGAAGGGGGATATGA
GTACCATGCCGCCGATACCGCTGTAGAACTCGAGGACCCTCCATGGAGACGGCGTCTCCA
TTGCCTTCGGTGATCGCGAGGCGGCGGCTCGTCGGCTGGACTCTGGTTCTCGTAGGTTTC
TGCTGTTCTGCAGTGCCCAGTGTTACACAAGCCGGATGCAAGTTCGAGCCCTCGCCTGTT
CAGCCCAAGTGGGCCAGCTGTTTCAGTTGTCTATCCAAAATTAAATTTTAGCAGCTTCCT
CTATTGAGGCCATCGACTATCTTGCTCAATAAGATGAAGATGTGGATTCAAATTCATGAC
CTGCCAGAGTTGTAAAAAAAAAAAAGAATTCATGACCTGCCGGACCTCTTCTTCCATCTC
ATAAAAGCTCCGGGCCATCACGAGCCGATGAGTTTGTGTATGCTGAGTCTAAGTCTCAAG
ATTTTAAAGGAAATTGTTTGTGTGTCCATATAGATGGATGCCACAAAACCTTTAAAAAAC
GTTGTGTCTTTGGTCATTAAGAAGAAGAGGAAGATCTTCGTGGTCAAGTACGAAAGACTC
CTCGACTAGTGTGTTGTTTGTGGTTATCTTAACCATCTTCATAAGGAGTGCGGGAATGTA
ATCCATCTATCATCGACCTTGGTCTTTAAAAATCTTCGAGCTGACTAGTTTAGGGGCCGT
GATAGAGGTCCTCGAGCAGACAAAGGATTTCATGTGCATGTATTTGATAGTTTAGGATTT
GTAATCCGTCTCCTACCTTATTTTTAGGGGAGGCTTCTTATCCTCCAAATATGTGCTCCT
ATATATACCCACTCATGAGGCTTAATACAACAACCATCGATTTCACCAATCCTTCTCTCT
CTTCCAACGTGGTATCAGCCTAACCGATCCAACCCTAGCCGCTGCTCATCGCTTCCGCCC
AGCGCGTCGTCCCCGGGGCGGTCGGCCTCCATGATCGTCATCGGGGGTCGCGTCGCCCGT
ACCTAGGGTTCGTCCGTCGGTCATGTTGATCGGCTGTCATAGAGAGTCTTTTTCCCGATC
TCTTGATCCGGGGTTTCTCTCTTCCGCCGGTCTATTTGATCGGCGTTTTTTTTTGTTTGC
CTATCTAAGGTCGGTTTGCATCGCCCGCCACCGTCTTCGACCCCGCGCCTCTACTCCGAC
ACTGACGCGACCAGTTGGCCTCTACTCCGACCCGACGGTCTTGCGCGTCGCGGGCGGCCC
GTCACGACCGTCGCCCGTGCATCTGCCCGCCCGTCGCTCTATGCCAATCTTCGCCACCCC
GCATCAAATAGGACGTCTGCATCACCCACCTACCGTCTTCGTCACCACTCGCCAGCCGCC
TCGGGATCATTGGCTGCATTAGACTTGCCGACTATCGGCTGCCTCAGCTTGTCCGCCCCC
TTGTCGGCTGCCTTGGGTCTGCCGGTTGCATTGGGCTTGCCAGTTCTCGGCTGCCTCGGG
CTCACGGCCCATCGTCGTCCTCCTCCCGCACACCGCTTCCCGCCGGGCATCGTCGCCTTG
GTCTGCTCGATCACCCCCACTTCACCGTCCACGACATTGTCATCGTCACCAAGCAGCGCC
CCCGTCCTCGCTTTGTGATCGGATTGATCACCCGTCCACCACGATCGACTCCATCCACAT
CGTATGACTGACATGATCAGTCGGTTGCATGTGCCTCCGTAGGTCCTGTGAAGGTTGTCC
CCGAGTTCAATGTGCCCCTCCATCGATCGAGCAATGGGCTGCCGTTGTGTCGCCCTGTTA
GGCCACAACGTCGTCGCCCCGTGGTTCTCCCCGCGGTTGCACTAACCCGGGAGCTGCCTC
TACAGACCCCTTCGGGCTATAGCGTTGCGGCGTGCAGTCCCCGCTACCGCTCGAGGCCAT
CCCCGTGACTGCATCAACCCACACATCATCGTTGTATCACCCCTTTTGGGTCGTAGCGCC
ACGACAGGCGGTCCACACTGCCGCCCCGAGGTCTTCCCGTCAACGCCACGACCTACATGA
TGCCGCTTCGTCACCCCTTTGGGACATAGCGCCACGATGCGCGATCCACTCCATCGCCCA
CGCGCGTCGACTTCTACACGGCATGCGTCGCGCTGCCTCCCTAGACGCGGGAACGCTACC
GTCCGCGTCGTTCTTCGTCATGCTATCGGGTTCTTCCTCGCCTACTTCGAGCATTGCCGC
CGCGCTCCTAACTAGCTGTTTCTGCTGCCCGTCAGGCCGCTGCCGCCGCTCTTCTTCGAT
GCTGTTGCAGCTCGCTCACCTGAGTCATGCTGCTCGTCCGACCCCTTCATCTTCTTCCAG
CACGAGCTCATCACTAGTGTCTTCGTTGTTTTCCTTGACCACTTCATCTACTTCGACCAC
TGCGGGCGACATCGGCCCCCCGCCGATTTTCTCGCAACCATCGCCGAGTCCTTCTCTGCT
AGCCTCCCCGACATGGCGTACTAGTTTGTGCATGTCCCCGTTTACGCATGCCCGGTGCTG
GCAACACCGACGCGTGCCTTAGTCCCTGGCGTGTTCCCAGACCTCGCATACCTGGAGCGG
CGCATCATCAACATCACCTCTGTCTGTCTATGCATGTCTAGTGCTGGCAACTGTTAGGAA
ACGTTGCATGGGAAACAAAAAAAATCCTACGCACACGAAAGACATATCCATGGTGATGAT
CATCGACGAAAGGGGAGATCGGATCCACATAC