Contig Data
morexGenes
Links



Map Locations of contig_61378 (4747 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_61378

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72290 1 1432 bp MLOC_72290.1 Available Available LOC_Os01g52240.1, FRAME:+1, EVALUE:8e-168, 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed





CDS Structure of MLOC_72290






Contig Sequence (4747 bp)

>contig_61378 4747 assembly3_WGSMorex_rbca.fasta
ACGACCTTTTTGTCCCGGTTCCAAAACCGGGACAGAAGACCCTTATGAACCGGGACAAAA
GGCCCTTTTTCTACTAGTGCTTCTTGCATTAATCTGACCATTTTATTGTGAGCATGCATG
GTTCACGAGAACATATCAATACTTCTGTGTGCCCTTACTTAACTATTGCCATATTGGTGG
AAGGCACATTTTAATTGATTCCCCTATTTGAAAGAGTAGCCGAGGTAAACATGACAGTGA
ATCTTCGCTGCTTTGACTGGATAATTGGTTTGACCATACTTTAGAAGAACTTTATCCTGA
GCTTTACTCCTATGCCATCAACTTGAATATCCTTTGAGTACTGCTTTGCAACTGCATGAT
CTAGCACACAAGTTTCATAGACCTATTTCTGCTCAAGCTCAGTCTCAGTTCATCCAAATG
CAAGAGAATATTACTGAACTCCAGGCTCAGGGAGACGCTGATCAATAGAATTATTCATGC
AATTTTGCCAATTACTCCAAGAAAATGTACAATATTCTTATGATGACTTTCAAGCTTGTG
CACATTTTAGCTGGCTTTGGAAGAGTGCCTGTCAACTCAAACGAAAAAAAAAATGTTGGC
TGCTCCATTGTAAAAGAGTTTTTTTTAGAAAAAAAGTATTACCCCCAGCCTCTGCATCTG
GACGATGCATGCAGCCATTTTATTAATTATTCACAAAAAACTTACAAGTAGTACATCAAT
TTATCCGAAGCCACTATCTTAACAACAACTATCGTTATTCCTAACCACTTGATGAAGGAG
TGTCGATAGTCCAAACATAATACCAAACAGACATCGCACCAAACCCTAACCTCTAAAACC
GGAGGCCCCAATCGAGCCACATACTGGGTTTAGGGTACAAAACAGTCCGAAGGACCCTCA
TGTGTCATCGTGGCCATCTTCCACCAATCCATCTTCAGAGTAGAAACTAACAGACCGACT
TGCCAGACCTCTCTGCCGTCGACATCATGACGCCAGACAACGTCCTCCTCCTGTGCTAGT
CCATCTTTTCACATCAGACGCCGAGCCTCCGCTGCGCCACGCCGTCGAGATCCACGGCCA
TCAATGAGTAAGATCAAGCACCGGTCCACCAAAGAAGCCGTCCATTGGTCCATCGAGCCC
ATGTACACCTCCAAGAATGACGTCCCCAAGAGGAAAACGACACCTGGGCGCCGTCGTCCT
ATGATCTACTGATCTAGGTTTTCCCTGGAGGTAGCGGATAGAGGTCTTGAGCTTCTCCAC
GGCGATGTCCTCAAGAAGGTAACGACACAAAAGAGTGCCGCCATCGCCGGTCTTAGCAAC
AAGCCGAGAATGAGATTTTCACCCGGATCCGCTCGACGAACCTCCGTATCGCATCGTGCA
CACAGACCACCACCGATCCCCGCCACCGCAGAGCGAGCAACCCACTCTGGCCAGTTAAGA
TCTGGCCGGAGGGCCAACCACACCGCCGCCGATCCGAGGTGCCGTAGTGCCAAGGCCAGA
TGCAACAGCTCCACCACTAGTCATCCGCCGCCGCTCGTCGTCGGGAGTGAGCCACCGCCG
CGGAGGCTCGGATCTGGGGGCGCACTTCCGCTCGCCTGGATGCCCCGCGCCACCCTCGCG
CGCAAGAAGGAGAGGCTCCTCCGCCAGAATTCTGGTGCAGTGGAAAAAACATGTCTTCCC
TCTCACGGATGTGTCCTTTTCCATGAACAACCTCAAGAAACTCAGCTTCATCTCTTCTAG
GACTGCAATTTTTCTTGGGCATGCTGGAATACTTTTATACTCCCTTCGTTTTTATTTACT
CTGCCTATTAAAATGCACTGAAGTCAAACTTCGTAAAGTTTAACCAAGTTTTTAGTAAAC
AATATAAACATTTACCGTAACAAATTTATATGATGTGAAGTACAATAAATAATTAATCTA
ATGATATTGATTTGTTATTCTATATGTTAATATTTTTATCTGTAAACTTTGTTAAAGTTT
ACAAAGCTTGACTTTGACCAATGCAAATACTCGGAGTAAATAAAAACGGAGGGAGTACCT
CACAAGCTCATCGGGATCTCAACCTTCAATGAAATTAAACTTGCAAAAATAGCCACTAAC
GCTCCATTTAGCATGGCGATAGTCATTCTATGCTTTTGAAACATATGGAAGATCAGGAGT
GATGAAATACTCAGAACTGAGAGGCCTTCTCTGGAAAGATGGCTTGGAAGTTTCAGCGAA
GATCTTACTCTGGTAGTCTGGTTATCCATGGAGTAAATAGAAAACACTTGAATAATTTTC
TGTCTTGCATAGAAATAGTTTGTAATTGTAATCTCTCCCCTTCCCTCTTCTGTATATACT
CCCTTGTAAATATTTTTATCAATATGCATGATTACATAGTAGGATCCTTTCCTACTGTTT
TTCGGTAAAAAAAACATACATAATGTGTTCAGACGAGAGATAACTTATATGCTCCTGCAC
TCCCGTAAATCTACGGGGCCCTGGGCGTGGCAGTATACATGTTTTATCATCGAAGCTTTC
TGTTCCGTGCTTATTCTTCAGGCTTTCCATCAAGGTAACCATCACGAATGATCTGAATCC
ATCAAGGTTTTCTTTCATTTCTTAATCTGCAACAGAACAGTGTGGTCAATTATATCGCAT
CAGTGATTTTACAGGACTCTCTGCATTTTTACTTTATAATTTGGACAATTCAGTAACAGA
TAGACATTAATCTAGTAATCAAGAATCACTGTTGGCTATGAGACTGCAGCGAACTGCACA
CGCACGTGCGTGTGCTTTGCATTGTACTAGGCTCTCCAACCGACCCATATTAATGGTCGC
TGGTTTAGGACAAAGTTAGTAAAACTTTGTAGCGACAATTAACATGGATCGGAGGAAGTA
CCATTCATGTGAAATATAAAGACCTCTGCAAAAGCATTGTTACATTTGTCCAATGCAGTA
GTGTAGTGCCTCCATCTCCATACTGCCACTTAATGTTTCTGAAACCTGGCCTAAGGCAGT
CATATAGTTAGTTTTGTTTTGTCAGTTAGAAGCCCCAAGATGAATGCAAGTAGGTCTAGT
TTATGAATCCAAATTAAGCACGGTTGAAACGTATGTTAAAAAATGGATATATCTAGCTTT
ATGTATGGAATTTGGCTCAATAATGTGATCTTTCACCACGACGAGATGGTACATCCTATT
TTCATTTTCTGAAATCCAAAAGATACATGAGCGCGACAGCTCGCCGAAGTGCGCGCGATG
CTTTCCGGTACATGCGAACCATGCAGATCTCACTCACACACTTGATCCAATCGGTTGTCT
CCAAGGAAATCCAATCACAGCCACTCCTGGCCACAAGTTCACAACACTACTCATTTCTCC
TGGCTCACACTGCGCCAAGTGTTCATAGAGCAAGAGATCTATGCAGCACCCAATGGGAGC
AAAGCTCAAGATTTTTCTCTCTATCCTTGGTTATCTTGTCAGATTACACACCAAATGGAT
TCCCTATGACACCTCCTGCTGCCTTAAGTAGTCACCTCCCCCCTCTTCTCTCAAATCATC
TCCACACTCACTCATCTCCTTGAGAACCCATACAGCGGACACTTTTCTTAGCTTTCCAAT
GGCGGCAGCCACCATGTCCCTCTCCTCCTCGACCTTTGCCGGCAAGGCGGTCAAGAACGT
ACCATCTTTGGCTCTCTTTGGGGAGGCCCGAGTCACCATGCGCAAGACCGCAGCAAAGGC
GAAGCAGGTTTCCTCCGGCAGCCCATGGTACGGTGCTGACCGTGTGCTCTACCTTGGCCC
ACTCTCCGGTGAGCCCCCGAGCTACCTCACCGGTGAGTTCCCTGGCGACTATGGGTGGGA
CACTGCCGGACTTTCAGCTGACCCTGAGACTTTCGCCAAGAACCGGGAGCTGGAGGTGAT
CCATTGCCGATGGGCCATGCTCGGGGCACTTGGTTGTGTCTTCCCTGAGTTGCTCGCCCG
CAACGGCGTCAAGTTCGGTGAGGCTGTTTGGTTCAAGGCCGGCTCCCAGATCTTTAGTGA
AGGTGGTCTCGACTACCTCGGCAACCCCAGCCTCGTCCACGCACAAAGCATCCTAGCTAT
CTGGGCATGCCAGGTGGTGCTCATGGGTGCCGTCGAGGGGTACCGCATTGCTGGCGGCCC
ACTTGGTGAGATCGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCTCTTGGCCTGGC
TGAAGACCCTGAGGCATTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGTCGCCTCGC
CATGTTCTCAATGTTTGGCTTCTTTGTCCAAGCTATTGTCACGGGCAAGGGCCCACTCGA
GAACCTCTCTGACCACATCGCCGACCCCGTCAACAACAATGCATGGGCATTCGCCACCAA
CTTTGTCCCCGGCAAGTAAGGTGTCTTGGGACTATGCTCACCATGAGGCGTGTTGTCCTG
TGGTCTGAGTTGCACTACCATGATGTAAATTACGAGAATTTTGTGCAAAAGAACGGTTCC
ATTTGTCCACTTCCATGTCCTGCCTTGCATCGGTCTGACCATTTTGTTGTGATAATGGTT
CACAAGAAGGGATAAATACTTCTGTGTGCGCTTACTTAACTATTACCATATTACTGGAAG
ACAGATTGAAAACTGATTCCCCTATTTAAAAGAGTGGCAAGATGTAAACCAGGCTCTGGT
GATTCTTTGCTGCTTTGACTGGATAACTGGTCTGACCAAACTTTACAACAACTTTATCCA
GAGCTTT