morexGenes - Barley RNA-seq Database

Contig contig_61360

Source Contig contig_61360

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_61360 (4782 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_61360

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72278	1	945 bp	MLOC_72278.1	Available	Available	LOC_Os07g12080.1, FRAME:-3, EVALUE:1e-30, 13107.m01242 protein LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MLOC_72277	1	1028 bp	MLOC_72277.1	Available	Available	LOC_Os06g10530.1, FRAME:+3, EVALUE:4e-32, 13106.m01139 protein expressed protein

CDS Structure of MLOC_72278

CDS Structure of MLOC_72277

Contig Sequence (4782 bp)

>contig_61360 4782 assembly3_WGSMorex_rbca.fasta
ACAGGGTCGGGACTAAAGGGTAGGCCTTTAATCCCGCCCCTTTAGTCCCGGTTGATGAAC
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGCCCCGTCCCCACTAGTGTTACGAAT
ATAAGATGGACACTTCAATGGCTCATTTAGTAAAGAATTACACCCAAAAAGATGTATAAC
TATTTGTGTTTTTGTATTGTAATTAATAAATTGGTGTATTTTCATTATTCGTATACTGCA
TAGATCAGCTAATAACTTGGTGTGTGTTTTCTGTGCCACATCATAGTTTTTCTCACACGT
CCTGGTCCTGCCACGTCAAAGCACATGCACTATTTGCGCGCGCTTACAAATCCACGAATA
TATATATATGGATCGAGGAACACTTGTGAGGGTCACAAGCAATGAATGAGATAACAACAA
AGGCCATAAAACCACCGGACATATGAACAAAATATTGAGTTGAAATTTAAGAACCATAAA
ATGATCCTCTTTATTAATTAGTAAAGCAAATGTTGAGCAACGGGAGCTCACATATGCATA
TATATATGTGCATGCCACACATCCATGGACGGAGCATGCATGCTTATTCATTCATGAGCG
ACGGATCTATCTTTATATGTCCAAACCGAGGCAGTATGGGGCGTTGTGAACGGTCAGAAC
GTTGCATTGCCCCGGCGTAACGAGTACCTTGGCGAAGTCCCTCTGGGGCTCCTTGGGGCA
TCCGGGAAGGTCCTTGAGCACGCTCCAATCGGGGTGAGACCTCCGCCCTATGAAGTAGCG
CACCGCCTCGCAGCGGCAGTGCTGCGGAGCCTCGTCAAGCTCCTGGCAGCACCGATCCTT
TGGGGTGTCACCTGGCTCAGTGGATACCGGCGACCCGGCGATGCTGACGCCGCAGGTCTG
TTGTGCGACATACTCCCGGCAGCCTTCAAGCGGATTGCTCGGAAGACCCATCCCCGCGTA
GCAATATTGACCTGTGGCTGCGGCGGCGGCAAAGACGGAGGCCAGGACTGCGGCCAAGAG
GAGGGGGGTGATGCTGGACTTGGACGCCATATTATTCTTTCTAGCTTGGTCCGGTTTCTT
GCCTGTGGCTGTAAGCAATGCCGGCCACACTTGCATTGCCTGCATATATATATATATATA
TATATATATATACCAGAGAAAAGAGAGAGAGAGAGAGAGAGAGGAGAAGCTGCCAGCTAT
TAACTAAATCTGTTGTGCTATATGACGAATGTGGTGAGCTAGAGTGCACTTAATTAGTTT
GTTGGAGCAGAATTTGGAGGGAAATGCAACTGGCTTTTGTGTGGAAGCATTGAGATGTTC
GTAGCTGATCGGGCCTAGCTTTGCTTGTTATGGTTGATGTGGGCATCCTTTTCTTCTCTT
GTCAAGTTGTCACGTTGCCGCCATGGGTGCTTAAAGTGAAACTTTTAGCTAGTTTATACG
TGCAAACCTTGTTGAAACTAACAACAGAGTTTGTTCTTGCGCCGCGTGAGTAATCATGTG
AAACCTTGTTGAAACTAACAACAGAGTTTGTTCTTGCGCCGCGTGAGTAATCATGTGATA
ATCGGACAATGCGTGTGAGTAATAACTTCGCAAAGCACTGATTTTTGAATTTAATTGCAA
GTCAAGAGTATGTGCATACATAGATTGTCCATAACTCAAAACCCAGTTTCTGAAACAATG
GGTCCAAGTATCCGTTTTGGTCTGAGCCAGTAACACCACAAAGGCCTAGCCCATTTCGTT
TGATGTTATTTTCAAAAAAGAGGTCTTGTACCCCAATATATTGAACTCCGCGGTCTTGTA
CCCCTTAAGATTTTTCTTCCAAACAGTTTGGAAAAGTTGTTGTAGTGAAAAATCCACAGT
GTGAATTAGAGAGGGGCTAACTTATGTACTACTAGTCTTTTCGGCGAAAAAATGTATGTA
CTAGTCACTCACTCATCTTAGTTATGAGGCAACGTTTAAACAAAAATCGATAAAAATGAG
TCTAGGGGCAACTTTTACAGATTGCCCAAAAATTGAGCCTTTATATTGGCTTCAAAGGGG
CTCTTTAAAAATACCCACTCCGTTCCTAAATATAGCGTGTATTATATATGGAGCTTCTGG
AGGATCTCCCTCGTCCCAAGTTCGTTCATCGTTCACGGCTTCACACGGTAAGCAAGTTCG
TGCAGGTGTACAGGTGACATTGTCGTTACTTTGGTATAATTGCAAATTTGGTTTTCTTAA
AATTATGACCACGAAAAAGGTCAATCTTAGAGATTTTATTGTATTCAAGAAAAATTCTTA
GTTGTAGAAGTTATCGTACTCCAGTTTGAAAGCTGGCATCGCAAGTGAGCATGATGCAAC
AAAATTAAGACCTTTGACATTTTTCTTCTTCTTTTGACATATAAAAATGTCGCGCAGTCA
TGCCCATCTGCCAATTTTTTTTTCTTTGTGGGATAATAGATCCATCTCTATGCATATTGT
GCGAGAATATAGAATAAGCCTGGTGTACCCACTTCCCCAAAAATAGCTAAAAAACTGTAT
CTGTAAGGTGTGAAAATGGCACAAAAATCACGCACATATAAACTGGTTCGTCCGGATAAA
TCATGCGACAATTATTTAGCAAAATGGTAAAAAGAAAAAATGTCGACGCCTGAGAGATTC
GAACTCTCGCGGGCAGAGCCCATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAA
GCGTCGTTGTTGTAAGGATTCGCACATAAAACCACTCAACATAACGTAGCAATCATGTCA
TTTAGGAGTGTTTTCTTTGGCTATCAATTGCTTTTCGAGAACTATTACAATTCATTTTGG
CTTCCACATGATATGACAAAACCTCCCGTCTACACATCAGGCTGAGGAAGCAAAGCGATG
GCTTCCCTCGGTCGATTGAAAAAAAAAAAACTGACCACTTTGCACGGTCTCTTCACGAGG
GCCATCGCTTGACTCCTGGTCACTCGCCAGCCACAGAGCCACTTCTGCAAATCTCAGACG
CTACAGCTAGCTAGCTGCCTTGTGGCAGCAAGCAATGGACTTGCGAGCCAAGCAAGCGCA
CATGGCGCCGGCTGGACATACGCCATGAGCGGATGGGCCCATGAACGTGAACCACCGATG
AGCACGCGTTTGCTTGGCTTGCAAGAACGTTGCCGCGTCCGGGAGGAAAACATATGGCCG
CCGGCCGCCACGTGAACTCGCGTTATCCTGTCGCTGCCGCACTGATAATTCCAGCCGCTA
TAGGTCGGCCGGCAAGCAAGAAAGCGCCCGGAAATGGACAACGTTTCGCCGTCGATTGCT
TTGCTTTTTTGTTCATTTCGAGTCGGTCGATCTAGGTTAGCCGCAACCCGCAAGCAAATG
GAGAGTGCAGCTTTGGAGCCAGTGGGCAGTGGCCCTACGTACTATCCATGGGTCATGGAC
GCCACCTCAGAGACGATCGTCCAAGACGCAGGTCCATGTGATGAGCGAGGCTTCATTCAG
ATGTGGGAGCAAAGCGTGGAGGCTTGCACCACCTCCTACGCGCGCTTGCGGCTTGCGTGC
AAGGCTCACGCCGCCGGAAAAGCAACTTGACGCAAGCCGCGCGCGTGCCGCCGGCCACCT
CTATATATATAAACAACGACCAACCGTACACAGGACATACATACCACGTTCTCTTCGACT
GTAAGCTACACACATCTTCGATCGCGTACGTACCTCAGTACGTGGTGTCGACGACGACCG
CCGTCATCATCGGCGGCCAGTTGAGCTGGTTTAGTTCTTGGGGAAATGGGCAACGTGGTG
GAGGCGGCGGCCGCGATCTCGCCGGAGCTCGGCGACGCGCTGGCCAAGGTGGCCGTGTTC
GCGCTCGTGCAGGGGCTGGTCTACCTCATCCTGCGCAAGTCCTCGGACGTCTTCTCCACG
GCCAGCGCGGCGAGGTCCCTCAGCTTCCGGCCCATGCGGAGCATGAGCGTCCGGCGCGTG
CTGGCGGCCTTCTCCGACGTCCCCGTCGGCGTTCCCGACGATGCCGGCTCCTCCTTGCCG
CCGCCGGCGCCGCAGACTGGTGATGCTGACCGGAGGGCAGACTAGTTGAAGTGTTCTGGT
TGTGTTCAGCTAATATATGTAGCGAGTACTGCGTGCTTTCTTAGGTATGGTTATTACTAG
GGATTGTTCTTAGGAAATGATTGTACGACGAGCATAAGAAAGTTTGTGCATGTACAGTAG
ATTGAACTGCGCAATTTGTCATTCGATTACATTTGAAACGAAATCTGCTCCTCTTTCGCA
AACAAAAAAACAAAACAAAACAAAAACGTTCTTGCTCATCGGGGTCGATAGCTTTTATTT
TAGGCAATGGGGGTCGATAGCTGTTGGTTTGTGTTGAGCATAGTTTCATTCTTCAGATTT
AGGCGGAGTTTCTCAGCTCGGCCGGTAAAGTAAAAAAAATAAAAAATCAAAAAATCTGGA
AAAATATGTGATAGACATTAACAAATGAGCTCAATGTTTGGCACAAAACAATCCAATGTT
TTTCAAGATTGCTTTTCATCACGAGTTCATTTGAGCTTGCGAGCAGAAGGTTACTTTCCT
CTCTGGAAGGCTAACTTCTCTTTTCGCCGGAGAGCTCCATATTTATGGGTTAAATTGTAG
CTTCCTTTTTTTTCGTACAGATTATCAATCTTAGCCGGCCCATTAAGGCCCTGTTTGAAA
CCACAATAGATTATAATAATCTGGATTATGAAGATAGATTATATAATTTGGTTTATAAAA
ATAATCCAGCTGGGTATGTTTGGAGGCCAGATTATATAAACT