Map Locations of contig_61237 (5252 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_61237

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72205 3 1040 bp None Available Available None
MLOC_72206 1 158 bp MLOC_72206.1 Available Available None





CDS Structure of MLOC_72205






CDS Structure of MLOC_72206






Contig Sequence (5252 bp)

>contig_61237 5252 assembly3_WGSMorex_rbca.fasta
AAAATATACAATGTTGTTTATACAAGCTTTACATCAAAAATGGCTGAGCTTTGATTTTTC
ATATATATAAACTGTTTTGCTAATTATTATATGCTATCATATATCAGCAAGATAAAAATA
ATGTTCTAATGCATATGTTATCATTAATTAACAAAATAAAATTGCAAATGAAACTGTTAG
TCATAGAAATTAATTAATTATAAAAAAAATTACAAGGGTCAACTTCTATTAAATTTATAG
CCCGTTGCAACGCACGGGCATTTGTACTAGTAGAGAGTAAATCGAATACAAACTGTTTGC
ACTGCAATGGACTTTCCAAACTGAACAGATCCTTAGCTAGCGGAAACGAGTCTGAACCTA
ACTAAACCGGGCAGAGGTCAAGGTGACATGGCTGTGCGTCGACCCATTCTCCATCCGGAT
CCAGGAGTTGACAGAGAAATGCTCTTCTTCTTCAGAGATGTCAACGATCCTCGCCCCTCT
TGGCCAGTCACCGTATCCTCCGTGCCCCGTGTGCCGCGCGAAGCACAGCCACAGTTTCTC
GTAGGGGCAGCACCAGTCCAGCCCGTGGTTGTGCCCCACGAAGATCGCCTGCACATTACA
AGATAGACGTATCATGTATACAGCTCGACAGGTAACCAGGCACCGCATTCAGAGTTTTTT
CAGAATTCAGACGCAGTAGTAGACTAGTAGGTGAACCTTGACGGAAGGCCTGTGGGCAAG
AGCGTCCATCATGCCCCATTCGGCCGCCTGTGGCGCCACGTCTTCCTCGTTGAGGGAGCC
GACGCATGGCTTGCTGATCTCGGTCGTGGCCTTTGGAGCCACCTTGACGTACGCCGTGCT
CGGTATGTGCCAGAACACCAGCTCAGGGATGCTGCCATCTGGGTTGAGGAAGCGAGCCTG
GCTGTGGAACCACGCGGCCTGCGCGCAGGATATGACCTCCGGGTAGGATCCGCCGCCGGA
GTCGAGGAAGTACATGAGCAGAGCAGGGTCCCGTGGCCGCTCGCGCGAGAGCACCTGCAG
CACGTAGTTGGACACGCCGGGCCAGAGCTCCCGCGGGCCGACCGAGGAGCGCGACAGCCC
GCCGCCGCGGCTGAGCTCGTCCGCCATCAGCTCGACCCGCGGCGTGCCCCGGAAGCTGCA
CCCTGGGGCGGCGGGCGGGCAGTGCACCGGCGGGACGCCGGCGGGGGATAACCACTCCGG
CGGCCACTCGAAGGGCATGTCGTCGTGGTTGCCGAACACCGTGGACCACGGGACGCCCCT
GCGCCTGGCCGCGGAGACCGCCCGGTCCCAGTACAGGCTCGCGTTGGCGACCGGCACGTT
GTTCGCCGTCACGAGGTCGCCCAGGTACACCACGAAGTCTGCGGACGACGATTCGGTGAT
TTGGAACGGGAAGTGGCTCGGATCCGCTTGCGCAGGGGGGAGGGAATGGGGCGGCCATCG
GGCTAGTACGCACGCTCACCTGGGTTCTCGGCGTCGAGCACGGCGGCCATGACGTGGTCG
GAGGCGGCGTCCTGCGCGGGGCCCCAGTCCGTCCAGGCGTTCTCGCCGTAATGCAGGTCG
GCGAACAGCACCACCTTGAACCGGCCAGCCGGCGAGAACTGCAGCGGCGCCGGCGAGCGT
GGCCCCGCGGCGCCCAGAGCCAGAACGGCGGCGACCAGGGCCCCGGCAGCCGAGAGGCGG
CGCTGCCACGACCGCATCTCGCGCGCGCTCGGTGGCGGTTGATGAGCTCTGGAGTCAGGC
GTGGATGGATGTGGCAGCTGGCAGCAGACCACGATCCAATGTTCGGAGAAGGTTTCGAGA
CAAAAAAACAAAATAAAAAAGACTGTCTCTGCACCGCAGATGCTCCTCGATCGGTCACGG
TGACTGTCGGCGGAGAAGCAAATGATCAACGTGGCACCTCATCTCGTAAAGCTCGTACGT
ACGTGAAAACGAAAGGGAAAAAAAAGCTGGAATATGCGGCTCCATGCACCGAGAATATTC
TCGGTCGGCATCCGCGGGCTGATCGCTGCGGACATTTTTTTTTTACCTTTTGCTCCGATA
AATTTCAGAATTAACTTTATCTTTTAAAAGTTCGAATCAGATCTTTTATGATAACGTCAA
CGTCCCTCGTGTTTACTTTGCATTGGAGACGTTAAATTCACTTACGTCTGATATAGACTC
GTATAACCGGCTGATCCGTTGAGTCTCTGACGTGGCTTGATACCACACGACACGAATTCT
GGCGTTTGGTTCTAGACCAGATGCGAAGGACCTAGTTGTCTCATATCAAACGTCAAAAAC
TTTGGCGTCTGGTCCGAACAGATCTCACAAATATGTTTTTTATAATATGTGTCACATCCT
CCACATACCAAGGTCTTTGATGTTTGGTGCTAGACGCCAAGGTCCTTGGTGTGGGTTCCT
CGCGTGTGTTATGAAGCCACGTCAAAGACTCAACGGGTCATCCGGTCATACCAGCATGTA
TCAAACGCTAGGGACTTTGACGTCTTCCATCCAAACGAGACGCGATGGATGTTCGCGTCA
CCAAAAGAGATGGAATTCAAACTTTTTTTAAAAGAAAGGTCAATTTCAAAATTTGTTAGG
GCAAAAGGTCAAAAAAATAATTTGTTTGACCGCTGCTTGCGAGTCGAGTGGAGACACAGC
AGTCCCTGCCGAACACCGCCACGATCAAACTTTTTTTTGGGACGTCACGCATCTATAAGC
GTAACTTGCAAATCTAGTCCCCAAGAGCAACTACAACCTAAACAAACGATGCTTTTATCT
GTTCTCTGTTTATTTGGGTCGATCATTCACTTCGCGTCCGCCCAGTTTAAGATTTGGATC
GGCAATACGACCAATGTCCGCGATCCATATTTACCAGTGTGGCCAGTTGGCCATCCTTTT
CCAAAAAAATGCACACGTTTTACATTATTTGACAAGCACACATATAAAAAAATAACATAG
TTTCACAATCAAAGAAAGAATAGTTTTTAAATAAATAATATAGTTTTACAAACCGAATAA
AAATTAAATTATCTCAAATACATATGAAGAAAGATACATCTATTGGTTGTCAACATGAGC
CCACATATGCTCAACCAAATCACTTTACAGTTGCATGTCAATTTCCCAATCACGCATTTA
ATAATGAAATTGGACGAACTATTCAAACCTTACAGCTCTTCCATGCTCAGGCACAACATT
CCCACCGTGAAACTGAAATCCTCGATCGTAGATACATTCCGGACGCTCATGTTCTACGAT
CATATTGTGCATAATCACACAAGTTGTCATCACCTCCCACAGCTTCTTGATGCTCCTAGT
CATAGTAGGGTTCCGAACGATGCCCCATCTAGATTGCAAAACACCAAAGGCACGCTCGAC
GTCCTTCCTAGCACACTCTTGCTCTTGAGCAAATCTTTTCCTCTTCTCTCCAACAGGGTC
GGAGATTGTCATCACAATAGTAGTACAGTGAGGATAGATACCGTCACCTAGGTAGTATCC
TTTGTCGTAGTTGTGTCCGTTGAGGTAAAAATCACCAGACACTCCGTATGCTATCATCCG
GATGGCTGCAGTGCATTTTTGATAAGATGAGAAGTCAATCTTTCCAAGGGAGTCCTCTTT
GCATTCAAAATAGTTATCATATCCGACCACCCCTCTCTAATAGGATTGAGAACATGCCTA
GCCATACGTAAACGCCGTCGGAATTTCTGATGTTTGAACAACGGATTGGTTGCGTCAAAG
TAGTCAAGCAAAGAAGGAAATGACCGATCTCTCAATTACGATTAAACGCTGGAAGGGGGA
TAGAGCCATGAAACAAAGGTCGTTGTCTATTAAGGTGGTGATGGACAAAGCACGACAGCC
AAGATCTCCTCATCATCATTGGACGAGGAATCGTCGGAGTCGCAAAGGAAATTATGGAAA
AAGAACTCGTCGATGTATTCTATTTTGTACCTTGGCAAACTATCGAACAACTTGTGGGCG
GCGTCAAAGGAGCTAGCCGACGAAGAGATGCGCGCCTCCCTTGGACCAGGTGGCTGGCCT
GGAGAAGTCCTCGCAGCGCCATGATGGTGGCGGCGAGGTGGCAACGTTGGGGGAATGTGT
GCCGACATCGACAAATGAGGGTGGTGACGATGCGACGGAGGCGGGCGAGGGTTTAATGTC
GATATGGATGGGAGAGGATGACCAATGTGCAACCGACTAGCGTGCCAGGGGGAGGAATAG
GCGGGCGCCGAGTGCGTCCGTCTCGTGTCCACGCCGACGCAAATCAGGCTTAAAAATGGG
CTGGGAATGGGTCGACGGGCGGATAAAAAGCGGACGCGCGTCCTTTTGGGTCGGCGCATT
GGGCCAACTTTTCTGCCCACCGCGGCCCAAACGGACGCGCACACGAAATGGGTCGGCGCG
GTGGAGTTGCTCTCAAACACCCGCGGACACGACCGGACGTGTCTGTTTTAAATCCCTACT
TTTCCATCCACGCAGCCGCACCTTTTATATTTTTTCTCATATGTCCGATCACTTGTATTT
GATTGGTGGAGAAGAAAAGAGATAAAGAAAATAATGAATAAATAAAGAGAAAAGGTGGTC
CGGGATGAGGCCGCGTTCTACATGACAGACCGATCGGACATGTCCGGACGCGTTCACGAG
CCCTCATATCGTCCTCATATTTAAGATGGACATAAGGGGCGTCGGTCAATCGAGGCGTTC
CAGATGGGTATGAAGGGTCCAACCGGGTCAACATTTTATGATTGCTCAGTTACCAAACGG
GCTGCCCAGGCGTTTAAGGCGGGTTTGAGGGATCCGGTTGTAGATGCTCTTAGGACCCTC
TTGGTTGTTTTTCCGAAGTTCGAAAACCGAAAATTCAAGTCAAAATTCAAAAACGGAGGT
CGCGCAAAATATGGTGCTCACTTCGTCCTAAAATATAGTGCTTATTTTAGACATTTTAAG
CTAAGTTGTTGTACTCCCTTTATTTCATAATGTAGTGCGTATGTCATTTTTGATATTTAA
GTTTGATCAGAAATTTAACCACATGAACGACTGCAACGGGACTAAAAGTTATATCATTAA
AAACTTTTTTTGAAAACGAATTCAATGATATAATTTTTTGCTTCCAACAGAGTCGTTCAT
ATTGATTAAGATAATGATCAAACTTAAATCGTCACAAGCGCGAACGCATTACATTATAAA
ATGAAGGAAGTATCTTTGACCAGGTTTAGATTCCTTTATCAATATCTAGAATGCGTTAAC
TGAGTCTAGCGAAGATGCGATGATCATTGTAT