morexGenes - Barley RNA-seq Database

Contig contig_61215
Source Contig contig_61215
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_61215 (8469 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_61215

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72187	1	539 bp	None	Available	Available	None
MLOC_72188	3	1146 bp	MLOC_72188.2	Available	Available	LOC_Os01g46340.1, FRAME:-1, EVALUE:2e-154, 13101.m04760 protein chloroplast unusual positioning protein, putative, expressed
MLOC_72189	1	691 bp	MLOC_72189.1	Available	Available	None
CDS Structure of MLOC_72187

CDS Structure of MLOC_72188

CDS Structure of MLOC_72189

Contig Sequence (8469 bp)

>contig_61215 8469 assembly3_WGSMorex_rbca.fasta
TCTTTGATCAACGAGCTAGTCCAGCACAGGCATACTAGGGACACTTTGTTGTCTATGTAC
ACACATGTATTTGAGTTTTCAATCAATACAGTTATAGCATGGATAATAAATGATTATCAT
GAACGAGGAAATATGATAATAACTAGTTTATTATTGCCTCNNNGGCATATTTCCAACAAA
AACTTGTTTGTTATATTTTGAGATTATACCGTCACAAGTCAATTGTTATAACAGACATAG
TTAACATATGCTTAAGTTTCTCAAATCATGAGAGTATCATAGTTTCTTCTTACCGTACGA
TGGTAATGGGGTTGCTCAAACGTCATCTATTACAAGGTGATCAGAAATACAACTTATAGG
TTCATCGAAAAGTTTGACAAGGAACTACAAAGCTCAATAGTGGGATTTGCTCCTCCGATG
ATGGAGAGATATACTTAGGGCTCTCTCGATGTGAAGGCATCCGTCATCGTGTGGCCACAC
ATAGGTGACTAGGTCACGGGTATGCCGGAACTTGTCAACGAGAAAGAAGAATAAAACCGA
TACCTAGGAGATCGGTATAGTGAGCATGAGAATAACTCAACAGGATACCAATACATCTCA
CCTCAGGTTTTGTAAGTATCACGAAGCAAAGGGAATAACACATGGTAACCAAAGGTTCAC
TCGAATGTCACTCGTATACTCACAAGGATTGATATGGACGTCCATGGTTCCGCTATCAAT
CATTAAACCAAAGGGGTTTTGTTCATGTCTAAGCTTTACCAAACCTGCAGGGTCACAAGT
TTAAGGTAATCACGATCTGCTGAGTGTGAGTAGGACAGAAGTAATGAAAAATTATTTATA
AAATGATTTTATTAATATTCGAAATAGTTTCAAGACGAACCGGAAGCGTTTCAGGGTCAC
CGGAAGGGTTTCGGAGTTTATTTTTCATGCTAAAATTGCATTGTTATGGAATATTTAGTT
CAACCGGGGCTGACATTGAAGGGTAATTTCGAACATGCACGCTCTCTACATGATCATGAG
GACTATCATACGTTGGTTGGGTTTAATCTGTCTAGCAGTCCGAACATCAGTTCTGGGTTT
CTGACCCTGCATCCTTCAGTCCATCAGCATCGGGGAGGGCATGGTGTACGTTTGCACTCT
TTTGCTTTGTTTCAGAAGAAGAAAAAAAACACGTTAGAATCGGCCATCACCAGTTTGGCA
CATAAACAGTTAAATTTTCACATCATGTGACGCTATAATCAAAATGCTTGTAACCCCTAA
GGGAACATCAGGGGAACGTAATAAGAAATGGTGTACACATATTTCTACTGGGGAAGAACA
AATAGAATTTGTTTCGAGGCAAGAAATCTATACAACATTTGTCAAGACAAACAACAACTT
AATAGTAACACCACAGGATTAACACAAGGACATGCTCAGGTCCTCGCAACAAGCCTTTGT
TGCCGCATGTGTCTGTTCTCTTTCTGCCGCTGAAATCGACACAGGGACGCCTTCTCCTTG
AGCTCTTGGAAAGCGCGCATAGTGTCGGCGTCGAAACCGTTCGCAAACTGTATGAAACAA
CGATCGCGTTTTCCTTTAAGTTGGTCATTGAGTACCATGTTGTATTTTTCTGCGAATAGA
TACTATATATACCTACCTGGTGTACTCTGAAGGCGAATCGTACTCCTTGAAGCATCAGCT
CCTCTTCGTCGGGGCCGACTTTGATGGCTTCGAGCTCAGAGGAAACTCGTTCCAAGTACC
TCCTGGCTAACTTCACGGATTGGAATTTGATCTGTACATCAAATCTTTCATTAGAGGTCA
TCAGCCACATTATATGTGTGTGCATTCAACAGCTGGTTAGAACAAGCGCAGAACATGTTA
ACAGAGTATTACAACTAAAATGACATTAGTGCACCGGGCTTATGCAACAACACAATGTTA
ACAGATCAAGGTGCACACGTCCACTTATTAAAAAGAAAAAAGGAGAAGACATGACACAAA
ATCTCATGCCGAAGCGTTCAGCAGAAATTGACGGCATGCAGCAGCGATTGTCGATCTCAA
CCATCCATTTGCAACAGAATGACCGTGAGAATCAGTACTGGTGGGAATGGTTCTCCAAAA
GTAACACCCCGAGTAAAGAGATGGCATGCAAGCGTCGCCGTCGCTAGAACGAAGCACTAA
ATGCCATATCATAGGTTTTCTCCCTAAAGATCAAGTACGAACAAAATTCAAGCTACACCT
TTAACAAGGTAGAGACGTAAAAGACCATGAGCGTTAGGTATAAGTATAACCAACGAAGGC
GGACCTAGGGTGTTCATCTTGGTGATGGAGACCAAGTATTCAGGGTTTTTTTTTTAGAAA
AGGAGGATGACCCCCGGTCTCCGCATCTGGGAGATGCACCACCGAATGTATGTTCGCCTC
CACTTGTCAACATGGCAAGATGATACTTCCTGGTATTGTTCGGGACAATTTGCCCAGTGC
TTGATCACATAAGTTGTTACTTGAAAAATTCATGAAAGTTATGTAACGTTCATATCCATG
GTATATGCACGAGGAGGCAACATGTGCATAATCCTAATGTGAGACTGCCACACGATTGAT
AACCATGCCCGCATAAGCAGGCTGTCTAAACCGCGACAAGAGTTGCCTGCTACTAAAGGT
TGAAAAAAGGATCGTACCCAGAAACAAGGAGGGTGTAGAAAGTGACAATGCTTTGGAGAC
TGAAAATCGGCATAGACCCATGGATTCCCAAATAGTTCAACGTTTTGGATTGTTTGCTGA
ATCCATGAGCAGGCAAGGAACAAGCGAAATACTTACTCCAAGAAAGCTTAAAAGAGTTTC
TTATCCCATGCCTTTGGCGAACCTGCTACAGTCCTACTGGTTCTTCCAATTATGAAACTG
GGATTGGCTTGTTGACCCTTCCTTTAGACAAAGAGCCCCTGGCTTCGCCATCGATGTGTT
GTCATTCAACTCTCCACAATCCTGTCATTGGGCTACTTGCGTCATCGGCGGATAGAGAGG
AGAAGTGGTGGTTGATGAATAGTCCTCCAACTTGTAGCACTTCGTGGTTAACATGAAAAC
TCCTATATAGTTCTCCCTCGGTAGGCAAATAGTCTTTGCGACTTATATCTTTACTATAGG
AGGAGGATAGGAGTGGCACCAAATTTATAAATGCCATTGTGCTCACAAGCGATAGTCGGT
GGAAAATCCATGGCAAATAGGTCAACCTTTTGATAAGTGTACAATATCATCCCTGTCGTC
TCACCCAAGTGGCACTCATGTCGATTTCACGACAACTGTGATCTGCCCACGCCCCCGGGA
AAACAGATCGCCACGTCGCTCCCACGGGCGGCCGGGCGAAACCCTAGCCACCATCGCTCG
CACCTCCTCCCTGCCTCCCCTTTCCCTCGCCGCCGACGGAGGGTGCCGCCGGGCGAAGCC
CAACTTGCGTCGACAGCGATAGGGCCCCTTCTGCTTCCTTCCCTGGTGGCTACGGCCCGG
GACGTGGCGAGCGGGTGGGGAGCGCGACACTCCCGCAGGGCGTTACGTCTGTGACTCGGA
CGGATGGGCCTTGCGCACGGCGGTGCATGTGTGGCGAAGGTGGCCGGGAGGGCCGGCGGG
GCGGCTGGTGCCAGCTTCGTCGGATCTGACGCTTAGAGCCACAAGCTATGGCAGTGCCGG
TCGGTGTCCTTCGCCGTGTCGGCATTGTCGTCGACGTGGTGGAGGCAGCGGTGTGGTGGT
GGTCTTTTTGCTCTTATCGCATCACGACAACGATCTGCATGATCGGTCCTCCTCAATCTA
GCCGTCGACCTGTTCCGAAACTACTGCCGGAGATCTTGCCCAAGGATTTTTGGATCGGTA
CGAATCTGGTCATGCGCGTCCATATTTGCCTAGTCAGCTCCATGAGGGCGCGCCACGAAG
CTCTGTTGTTTGTTGACACAGTGGGACATGTCGATATCTTGATTTCCATGGCATAGACAG
CGGCGGAGAAAGTCATGATGACTAAGATCAGAGGATCAGTAAGGTGGAGGGGGCCTTGGA
GGTGATGGAGTCAGTCAGGTGTCTAATAACTTTCAGAAGCTAAAGTTACAAGTGAGGGCG
GCAACACTGGAGGATTTCATTTTTGGTGGTGCTCCTTGGGTTTCAAGTCGTAACTTTCAG
GGTGAAAATCTAAGGTCTGACCTTCATTGGTTGTGTCTAGCATTACCTTTCTGTAGGTAC
TAGGTATTGCTTTGAGAGCTCGGTCTTCTCCAGGGTGAAAACCTAAGATCTTGGGTCGGG
TGAGGACAGCGCTTGTGCACTGTTTCCATTTTGAAGGTGTCGTTTTTTTGAGACCTTTAT
GTCTTACGGGCGTTATATTTGGTGGTGGTTTGAGTGCTGCTATTGAGGAGTTGATCGGTG
TGGCGAGTCCTTTGTTTTTTTTCTTTTTTTGGGGGTTCTGTGCATCATGGATGTCTTTGT
GATATCTTGTTGGTGCAGAGGCTGGATGTAATTGATATCTTCGCAATATTAATATATTCC
CTTTAAAAAAAATATCTTCTGTTATATTAGATGATATGATTTTTATAGTGGAGATATTTT
GCATCTTGTTTTTCATGGTCTAGCATGTTCGACATTTCTCTCTGGATTAACCATTTAACG
TATAAATTAAAGCCGTTCAAATTATAGCCATTATACCATTGCAAATGACAGTTGAATTGA
TAGTTACAAAATATAATAATATATAAGAGAACAAAGAGGAAATGAATATACTATAACACT
AATCTCCCTGGAATTGGAGATCCCACATTCAACTGAGGACTCCAATTGACATTGTGACAC
CCGATTTTAGCCTGGTCAACAATTTTTCAAAGCTCTTTCATCTAAGTGTTTTATTTATAC
CTCTATAACACTATTTAGTTTGAACGAGTCACATTCAATTGAGGTCTCCAAGACTCCAAT
TAAAATTGGATCATCCGATTTTGACCGGGTCAACAAATTCTCAAAATTATCTCGTTCAAT
TCTTTAGACAAATTCATTATGATTCCTAATGGGTTTGGTTTACGATGTTGACCGAACTAA
CAGTTTTTCAAATCAATCAAGAGCAACCGGTCTACAAAATATATCAATATGGGCGCCGTC
GACGTAGAAATTTTCCCACATATATAAGGTTGGTTAGCTTATAATATAAAATCACACCAT
GAAATGCCCATCAAATCATCGAATTGTAAATTAAAATAAAAACAATGTGTCATCTCCGCA
TACATCAAACGAAATATTCCATTAATTTCAAAATATAAGGGGTATTAGTTTTCTCGAAAG
TCAAATTCTTCAATTTCGACCAAGTTGAGAGCAAAAAATATCGACATCCACAATATTAAA
TAAAAAATATGATAATTTATTAACGATGAATTTAATCACAATAATTTGATATTACGGATT
TTGATATATTTATCTACAAATTTAATCAAATTTAGAAGGTTTGACATTTCAAAAAAGTAA
TACACATTATATTTTGAAATAGAGTAATTAGGTTTTTTAATCTAACGGCACGCTTCTAGT
GTAGACTATGCCGGATATGAAATCTATATTTAGGAGGTCATCCTTTTAGACTATAGGCTA
AATACGAGAATACAGAATATCTACCATGTGAGGACTTTTGCTCCCAAGTTCCCTTCAGCT
CGAAATTTTGCAAAAATAAAACAATCAATTTTTTAAGTGTTCATTTATCTTGGGAAAAAT
AGACATATACATAAGGATGCCTACTTCATGTGTTTAAGTTTTCATAGTGAAATATGTTTT
AATGTGTCTACACAAGAACAATAATCATGAACTTTTATAGTGAATAGTAGATGCGCTAGA
AATTAATGTTTTTAGCTCACAACAAAACGTATTTCATCATGAAACTTCACAAACATGTAC
GCCTGTATATATATCCCTATATACATTCGTAATTTTCTGGAAAACATTAAAACTTAAAAG
GTTGAATTTTGAAAGGAAGATCCTTCAAATTCTAGCAATTTTCGCTATCTCCATCAAATC
TAGCTGCCCTTACTGATTTCCTCCCATGTGCAATGCTGAGAGCAGCTGTAGGTTTCTGAT
CAATCAGCCAGCGTATATCCAATCCATCAGGGACTGGTAGAGCAGGGCTCCACGTCCTAC
CGAAGAAGGCAACAGGCAAAAACAAAACGAGATCGAACAGTATCGAACTGTGCTGGTCTT
GAGAATGGGCGAGAACATTTCTGCCGGAACCATTTGCAGGACCACGCATACGGATCGACC
GTCCGCGCCCGGCAAGTCGTGGCTACGCTACGCAGAACGACACGGCCCCCGAGGTGTCAT
GGGCTTTGTTCTCTACCTCTAGAGACAGGAGCGAACGAATTAGCATGGTCACGAGATCGC
CTCCCCGCCCCTGACTCACGTGCACGCCGTAGCACGAGACAAGAAAATGCCACGCCTATC
GATCCCCCTTTTTTCGTTGTTGCCTAGTACGCCAGTTGTTGCGTACGCCTCGCACCTACA
CTACGCATCACGTGTGTCCTGTCGCTACTCAGACGAGGGGTAAAAGATAGTACTGTACCA
CGAATTCGTGAGCTCTAATGCATCGACGGCAAACGATGGAATTAGTAATAACGTACCTGG
CTGACGATCCCGGCGTCGTGCATCCACTCCGACGGGATCTGGAACCGGCCGTACCTGCCG
GTGGCGCCGTCGCGGACGCGGGCGAGATCGTACACGCCGTGCTCCAACCTGCACGCACGC
CGCACCGTCGTTGGTTGGTTGGTTGCCACATGACAAAACGCCCGACGATCGTGGAGCTGC
GCTTACTTACTTCTCAAAGAGGGCCTGCATCTTCTTGAGCGCGGCGGCGCAGGGCTGCCG
GGGGTCGTCGCGGAACGAGGACGCCTCGCCCTCCAGCTTCTTCAGGTCGCGGTACCCGAA
CGCCGCCTCCCGGAGCGCGTCCGCCTTGTGCTCCGGCCACTCGAAGTGCTTCAGCACCGC
GCGTTCGTCCACCTGCAACCACGCCCACCAAGCCATTACCAACTGCCATCACCGGTGACC
ACCAAACAAGCACCTCAACTCCTCAAGTGAACCCATTTTGGGGACACGCACGCACCAGGC
GGGATAGCTCGTCGTCGAGCCACTTGACGAAGCTGACCACGCCCTCGATGTTGACGAACG
CCGCGCCCTCAACCTCCTTGATCAGGAACCGGATGAATTCCCCCTGCGTCTCCACGTCCG
ACCTGATCTGCACACCGCAACATCACACACAGTTTCTCCATCAATCCCAGCGACGTCGTA
CAAATAATCCCAACGGCTAACCGAACCAACGTCCCGGGTGATCGACATCGGGTTCAGAAT
TCCCGCGGATGCGGTAACTCGATCTCGATCTCGGATTACTAACTGCTCGAGCCCGTAATT
CGCACATGCGTCCACCGCAAGTATAAATGCAGTGCATTTCGATCGCTCGCTCGATCCCAT
CGAGCCATGCCCACTTCGGAATCCGTGCAGATGTTTCTGCTTCTGTCTTCTCGAGTCACG
GTACACGCCAATTGAAGTTGTGCAGTACTATGCCATCGTCCCAACGTTGTAACCGAATGA
TTTCTTTTTTAATCGGGAATGTTATCTGACGACCTTCTCTACGAGGAAACTCCCGGTGAC
CTTCCCATAGCCGCATGATCAACATCTAACGGTGACGGTTTTCGGATGGAAAACGCACGA
AAATAAACGAAATACCATGGTTTTTCTTTTTCTACATGTTGCGGTTTGAGTACATGTTGC
ATTTCTGAAGCTAATATTGCGGTTGCAGTGTGGCACTCAGCAGTTTGTGCGAAATACCAT
GTTACATGTTGAAAAATGCATGAAAATAAACGAAATACCATGCAGCATCGAGAACGCAAA
GATTCGGAATTCCACATTTCTGCAGGAGTACATGTTGCGGTTGCAGTATGGCACTCAGCA
GTTTGCACCCAGCAGCAGTCTTGTACACGGCTATACGGCTATACCAACTTGTAATCTTTG
CTATTATTACCAACCGAAAAGACGAAACCAGTAGAGTACTGCTTATGTACGCCCCCTTAA
AAAATGCATTAATGTACGCGACTTTCTATCGAACAAATTGTGCGATTGTTCACCAGCAGC
CGTTCAAGACACGAATATGAATAGTTGAGTCAGTTGGGATATGTGAAAAATAGGCTCTTG
GAGTAGAAGTTACTAGAGGTGATTCCAGCTTAGTGCTTCATCATCAGATCAGATGAGAAA
AATGTCGGCCTCGGTTGTAGTATTACGTACCGCGAGGAGGTGTGCCGATCGGTTCTCGAT
TTCGCCGATCATGTCCCTGGTCGCCGCCGCTCCGCCACCGCTCGCTGCGTCGGCACCACC
GCTCCCTCCGTCCCTCTTGGACTCCCGCCGCATCAGCGAATGGTAGAACTCGACCACCTC
AGGCACGCGCCTCACGCATGAACCCGATCTCACCGGCGAACATGCCCTCTTGGACGGCGG
GGGCGGGGG