Contig Data
morexGenes
Links



Map Locations of contig_61193 (4601 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_61193

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72177 1 907 bp MLOC_72177.1 Available Available None
MLOC_72178 1 1175 bp MLOC_72178.1 Available Available LOC_Os01g44230.2, FRAME:-3, EVALUE:7e-129, 13101.m04586 protein transcription factor X1, putative, expressed





CDS Structure of MLOC_72177






CDS Structure of MLOC_72178






Contig Sequence (4601 bp)

>contig_61193 4601 assembly3_WGSMorex_rbca.fasta
TATATCAGCATCCCACACCGCCGAAGATATGTGTAGAGAAGAAAAAAGAAAAGAAGGGGG
GGGGGGGGGGGGGGACCAAATGGCATCTACATTTCCCACCCGCGTCATGACCTCTCTAAA
GCAAAAATAAAAAAAGCATTTTGCTGAAATTGTCCTACAGTTAAACCGTCTTCGCCCAAG
CGCGAAATCTCAGTGACGACCAAAATAAGAAAAATGCAATGATATGAATCTATCTATTAT
ATTCTTAAAACAACAGAAAGTGAAAGGTCAAAGATGGATGCACACGCACAAACCCATCGA
CTAATTCCAACTGACAATAGTGCTTGGTATAGAACTGTAAGACAAAACTAGGAAAAAAAC
TTATGTACATCTGAATCAGAATCCCATATGTGTGTTCCTCTCAAAATAAGAGCCTGCACG
CTTGAATCATGTTTTCTTTTTGATAATCCGCTTGAATCATCATAGGAATTGAATAGGGAA
AAGTCACGCATGCATCTCAATTAAGGCGCACTCCTCGTAAAAAAGCAGATCCCGCATGCT
TGAATCAGCTTAGGAGTCAAATTAGGAAACACCATGCATCCCAATTTGTACTATGCATCA
ACTTCAGGTTACTAAGAAATTTGAGCAAAGTGCAAATGAATAGCAATGTCAAACTGATCA
GGTTCTGGAATTTTTTTTTAAAACGTGCATCTCAAAACTACACATCAAGCGCAAAGAAAT
CATGTTATTACTCTTACGGTTGTGTAGATATTGTGCAAGGAAAATGCAGCAAAAACTGTC
AGTAGATCTCAGACCAAACAATATAGAAATACTTTCTGCAGATTCAATAGCAAAAGTAGT
GCACACTACATTAAGGAAGAGAGGTTTACAGTGTTTACTTCTAATGACCAAAATGATAAG
AGCTTCGTTTGCTTCTTATAAAAAATGATATCTACACAACATATTTTAATGTACAACAGG
AGAAAAAACTACCACGAGAGAAAATATTGTACTCACTCCGATCCAAATTAATTAACGCTG
CGTCAATAAATTTGGATTGGAGGGAGTAGCAATTTTGAATAAATATGCCCAGATAGTTAC
ATGCCTTAGATGGGTAGATGACAGAAACAACTAGAGCAACATGAGAATGCATAGAAGCAT
CAGAAGGCATGATATTTGCATTAGATAAAAGGACAACTAGAAATAACAGAACACGATGTT
TAAGTACCAGTGATCCACGTTGAAAGCTAATTCACGGTGGAGAATCCAGAAAATATATAT
TCTCTAAAAGATAGAGAACATGAGAAAGAGTGGATGAGGCGAAATTAGAGGTTAGTAAGA
AAGTCTATTGTTCTGTATATAGTGGGCCACGAATATCAATGCTAACGGTCTTCCTTTGTT
AGAAATAAAATACACTAGCTAGTGGCTACCATTATTTTCTATATTAGGAAGAAATACAAA
TATATTAATGAGTGTGGCATGAATTAAATCATGAATCATTCGTTTACAAGTATGAAGAAG
AAAAATATCAATATTAATGCCATGTAGTAATTCTAGCCGTGCATATGTGCGGGTCATCTA
GCTAGTTACTAGTAAACAGAAATATGCTATTTAAAAGAAGCACAATAACAATCAACCATC
CTCGAGAACAAACAAAAGGAGAGGACACAAAAAACTAGTTTATGGGCGACATTGGACACG
CACCTTCTCCTTCTCTTTCTCAAGGTTCCTTCTATCCGAGTCACTACGCACAGCAAGCTC
ATCAAGCTGCCTGGATTTGAATTCAAGATCCTGCATCTTGGCCTCCAGTTCCGAACGGAG
CTTCTGGTTCTCATTGATGATCATCTGAGAATGCGTACGAGCAAGTTGCTGCATTTTGCG
GATTTCTGGTGACAATGCACGGTCAAAATGCATAATTAGATAACTAAAGGGAAATACCCC
AATGCTCAAAGGAGAAAAATGCATATATGCTGTTCTACCATAAACAGAACATATAAACAG
CAAAAGATTGCAAACCAACCCTCATTGTATCTCTGGAGGACCAGCTCCTTTTCTTCCATC
ACCTTGTCAAGCGAGGTGGTCGTCTCATTGTACTTGCATTCAAGTTCCTGGACGTGCTTG
GCCTTTGCCTCAATTGTGCTGGCTAGATTAGCTACCAGCTTGTCGGTTTTGCGTGTTCCT
TCATTCTCAAGTTCTGCAACAGTTTTCAGATCACCATTTTTCTGCAGATGCTCTCCGATT
TGCCCCGGGGTTCTTCGATCATCAGCCCTTGCAACCCACCCAAACATCTCAGGCCCACGA
TACTTGTGCTGTTCCCAGTCCCGTTTGCCATATCCTTCTGCTTCAAAGTGGTTCTCAAAC
TTGAAGGCGTTGCAGAAGGAAGCATAATCTTTTCCAAACTCAACGATGGCTTTCCCGGTG
TGGCCTCTGTGGTTCCACAAAGGAATGACCTTGTGCGGGCAGAAGCGCGAGAGCTGCTCC
TTCAGGCGGTTCCCACTCTCCCCAACCTGGCGCCCTCCTTTCCACTCGGTGGGCACATTG
ACCAGCACTCCCATCCAGGGCCAGACGAATTGCTCGTCTCTGTTCTGAACGGGATGAGGC
TCCAGCTTCAGCCGTGACGGCGGCGGCTCCGATGCGTCGGCCGATTCATCCTTGAGGCGC
TTGGCGAGGACGCGGTCTCCCCCGTGGTGATTGTCATCTGGACCTGCTCCAGTCGCGTGA
CGCTGAGGCAGGCCGTCTCTGCTCCGGGAACCCGTTTCCTTGCGAATCCTGCCAAAATCG
GAAAAGAAAGGCGCTAAATTGCAGGCAGCTGCCGCGCGTTCCTTGGTTTCGCAGGGCGTG
GAGCGAAATCTCAAGATGCGGAAAGATGAGGGGTTGGGCGCCATATACCGTTCAGGTGCA
TCGCCGGAGTCCATGGATGGCCGCTGCTGACCGACGCCGCCGGCACCACCACCAACCTAG
GGTTTTAAGGCCCCGAGAGGGTCAGTCCAACCAATGTCGCTCAAAGGAAGAGGGAAGAGG
AGCCGGTTCACGAACGAGGAAGCGGATCGGAGGGCCTGGGCTCACCTTGCGTCCGCGGCG
GCGTTGGGGGAGGCGAGCCGCCGCCTAGCCGTACTGCTGTAGTGTAGGGCGCTGTGGCCG
GGCGGGGGAACAGAGCAGAGGAGATGATCACGTGATCGAGGAGGCGAAAAGCCGAAGCGA
AATGTCCAAGTGGCGGAGAAGACGGGGATGGGGCGCTGAGCAAGTGACCAGTGTGTGAGA
CCGTGAGAGACATAAAACTTGACTGCCTAAAAATTCATTTTCTAGATTTGGATAGCCAAA
AAGATTCTGTTTTTAGAACAACTCCAACCAGCCGACCCAAACAGACTGCAATTTTTGTCC
GCTTTTCGTCTGATTGGGTTGACTTGGCGGACACCAACATCCGCTTCGCGTTGGGGTTGA
CACATGCACCCAACGCTGACCCGATCCATTTTTGCCGGCGCGTGGAAAAATAATAATCAA
GCATTAAGCCGGCCACGAAGGCCGGTGAGAATCCACGGGTCCCCATTACATTATGAATGA
AAAGAAGAAAAAGAACACTAGGCGTCCTCGTCGGCGACGGCGAGGTCTGGCTGCGCCGGA
CCGGGGGCGGTCTGTGCCGGCGCGGGCAGTGCCGGTGTCGGCAGTGGTGCAGCATGGGCG
CGTTCATTCGCCAGGCGCAGCGCCATCTTAGCATGGAGATAGGCGGCCTCCTCCAGGAGC
AGCGCGCGGGGATAGACGACGAGGTTGTTCTGGGCGAAGCCGGACGCAGCACGGACGCGC
TCATGCGCCTGGCGCATCGCCCTCTTAGCCTGGAGGTAGGCGGCCTCCTCCGGAAACATC
GCGCGGGCATAGACGACGAGGTTATCATCATTGTCCATGGCTGCTGGCTAGGGCCGCCGA
CAAGGAAACAGATGGTCGAACCCCACCGCGCGGTCGGATAAAAAAAGGCCGACCGCGGTC
GCTGACGCGTGGGCCCGAGGAGGGCGGCCGTCATAAATTATGTTGACTGCGGTGGTTGGA
GCGGACACCGAGGGGGCGCGCGCGTCCCCTTCGCTTCCGCGCCAACGCATTTCAGTCCCA
AATTTGGGTCGAAAATGGGTCGGTGCGGACGCGTTATGTCAATGGGTTAGCGCGTTGGGC
CATCTGTTTTGTCCGCACGGCCCTAAACGGACGGCGACAGACGAAATGGGTCACCCCATT
GGAGTTACTCTTACAGCATACTTAAAATTGGAGACCCACACTTTCAAGACCACATGGGAC
ATAAAGATCCGATGGTGGTAGGCTGAGTCAACATGACGCTAGCGAAATCGTCACGCGTCG
GCCGAAATAGGAAGCGGGGGAGGCGGAGCTCGAGCATCACGAATGGCCATGCGGAGCTCG
GGGAACGGTGATGTCGGTCGGTCAAAAGGCGGACCCGATGGCGAGGAGGCCGATTTTGAT
CGAGACAACGCCTAACAGCGTGGAGCACGGGGAATGATGACCCACAAGTATANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTGACA
AGTGGTTTTCAGCACGGGAATATCTGCAAGCACTGAAATTA