morexGenes - Barley RNA-seq Database

Contig contig_6118
Source Contig contig_6118
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_6118 (8563 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_6118

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72171	6	2364 bp	MLOC_72171.4	Available	Available	LOC_Os06g17840.1, FRAME:+1, EVALUE:0.0, 13106.m01957 protein expressed protein
MLOC_72172	2	1084 bp	MLOC_72172.1	Available	Available	LOC_Os06g17830.1, FRAME:-1, EVALUE:2e-135, 13106.m01956 protein oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
CDS Structure of MLOC_72171

CDS Structure of MLOC_72172

Contig Sequence (8563 bp)

>contig_6118 8563 assembly3_WGSMorex_rbca.fasta
CCCCCCGCTTTCTTGTTAAAATTGCTCTTGCATGTGCATATGGCTATTATGTAATGCCTC
CTGGCAGGCTCCTGTTTTTCTGTATGGCTATTCTGGAGTGCAAAAGAAATGAAAGAATGA
ATCTCTACTTTCCCCCCTTTCTTGTTAAAATTACTCTTGCATGTGCATATAAGCATATTT
ATAGAAGAGCTCTTTCCAGGCCATTGCATCTACTTCTTTCAACCCTCCTGGGAGAAGAAG
GTTTGCAGTATAGTGTACCTGGTATGAAAAAGGAGAGTTTCGTGACAACATTATCTATAT
TGAGAAGCATCAAATGTTCGAAAGATGTGGTCGATGCAAATAAGACCAAGGTAAGCAAGT
GTTTGTAACATTTGTTGTCATGTACTGTAATCTGTTTGCTTGCTATGGGCGTTGACTTAA
AATCATGATATGTTGTTTACAGACTCTACATGCTATATGTGATCTTGGTATTCTTATTGC
AAAGAGGTTATGTCCGGACCAGATAAATGTATCCGAAAGTCAGATGGTTCCATTGCCTGC
ACAACTTTATGCGACAGTTCAGGATGACAAAAATGAAAACCCTGTGGTAGGTGTTCTAAC
AAATCATTAAGCATAATGTTTGTTAAGAATTGTCAATGGTTACCAAGACATCAGCTTGTC
GCGTCGATGGTTACCAAGATTTCTTGCCTTCTCTCTATAGGCTTCCGATTGTAATTATTG
ATATGTTACTTTGTAGGAGAATGATGAACAGAAGTGGTTGGGATGTGAGACTGTACTGTC
CCATTTCGAGGCTCTTATGACAACAAATATTGCTGAGGTACGCAACACACGTCTATGTCA
TATTATGATTCCACTTCAGTTATCTGCTGGACCTTGACTCCTCTTTGGTTTTATGTCCTT
CAGGTTGAATCTCCCGAAGATAAGATGCTCATAGATGAGACCGATGAATTTGGTAATGAG
ATCCCTCTAGGGAAAATTGTCCAAATTCTTAAATCCCGAGGAGCAAAAAAGACGGGGGGG
AAACAGGAGGCAGCATCTGTTCCAGTAAATACTGGAAAAGATGATGATGTCTTGGGTTTG
TTAAGAGAAATAAACCTGGATAACCAGGACAATCTGGGGGAGTCGGAAAAGAGCAAACCA
AAGAAGCCACAGATGGATATGAAAGAGGGCAACGAGAAGCCAGTAGATTTTTCGACACCA
AAGCGCAAAAGATCAGTTTCTAAGAGTAGACCACACTCAGGAAAAGGCAGTAAAGACAGT
GATGAGCTTTTAGTGCATTCTGTCAGCAAAGGAAAAACCAACGACTCTTTAGAAAACAAG
TTGAAGGAGAAAAGAAGAGCTGACTCAAATGATAAGGACTTGGTAGCCTCACCTACCAGT
ACCAAAACCCCTGTATCGAAAGGGAAAAAGGATGCTAAGTCCCATACTGAAGTCTCGCGT
AGCAGTGCAAAGGTAATTTCTTTCTGTTCTATGATATGTAATACTCCCTCCGTCCTAAAN
NAAGTGTCTTAAGCTTAATACAACTTTATACTAGAGCTAATACAAAGTTGAGACAGTTAT
TTTGGGACAGAGGGAGTATGTATTTGTGGGACCTATTGGTAAAGTTCTGGTTCTAAATTG
CCAATTCATATTGAACTTTCCCCAGAAGTCTGCCGATGAGGACAGTACTATGAGAACTGC
TGAACTGGCTAGACACAATGGGTCCTTCAAAAGACAGAAGCCAAGACTGGTTTCTGGTTT
AGCAAAGGTAATTTCCAAGGTTTATGCAGGCATTGTTGAACAAAGTCACTAGAAGGAAGT
ATGCATATACAGCGGTAGTCAAGTTTGTGCAAGTGCAAGTATGAGCATCCTTCTATTCTA
GTGTATGCACTAAGAATTAATTAATTGATGCAGTGTTCAACGCCTGACTCGAGCAGTAAG
GACTTGGTAGGACGTAGAATAAAAGTTTGGTGGCCTTTGGATAAGGAGTAAGTTTCCTCT
TTTATATAATTCTGAACATTTGTTATAATCTGATCTTTGAAGGTGGCCTCCAGTTTTAAA
TTGTTTCTTGTTATCAGATTTTATCCAGGTGTTGTGAAATCTTATGATTCAGCAAAGAAG
CTTCATACAGTAAGTTTCCCTCAGACGGCTCATTTTTTATTTTAGATGAAATAACGGTGC
ATTAATTAGTATCTCTATCAGTATGGTGTATCTGTTTGCTCCATTTTTTCTGTTATGAGT
ACCATCATGGAAAGCAAGAATGGTTTGCATTTTATCATGCAGGCTATTCTATGAAATTAG
CTGAGAGTATTTATGGTGTATCTCTATCAGTATGGTGTATCTGTTTGATCCATTTTTTCT
GTTACGAGTACCATCATGGAAAACAAGAATGGTTTGCATTTTATCATGCAGGCTATCCTA
TGAAATTAGTTGAGAGTATTTATAATGTGATGATTCTTCCCTCGCTGCTTAGCGTTGTTT
ATGAACTATTATCACTTCCAAGGGTTAATGTGTTGGGCATGTTGATAGATACTGTTCAGC
ATACACAAGGCCATATCAGCAACCTTTTAGTTCTTCTGCATAGCGCCTATTCAATATCAC
AGCATGCAATAGTTGTATACTCCCTCCGTCCTGAATTACTTGTCGCGGAAATAGATAGAA
ATGGATGTATCTAAAACTAAAAATACTCTAGATACATCCATTTGTTCGACAAGTAATTCG
AGACGGAGGGAGTAGTTGATTGTGCTTGTAAGAGATTGTGACTGTGCTGGGTATATACTA
AATATGATTATGCTTCTCTGTGTAGGTCTTATATGATGATGGAGATATTGAGCAGCTTAA
CATGGCTAAAGAAAAGTGGAAAATGATTGAAAGTAATGGTTCACCAATGAAGGTAGAGGA
TTGTCAATTCTTTCTTTCCTAAAATTGTCTCTTTAGCCCTAAAGATAATGTTCAACTCAT
TATAGTTTAACTGATTGTCTACAGCAGCAAAAGAAGGATCATGTAGGTTCAAATCAAGAA
CGGTAAGCCAGAATTTCTTCTTCAGGAATTAAGAAATGACTTTGTCTGCCTATATTTGCT
TGTTAGCCCTAACAAAGTATTGCTTGTCAATGTGAAATGTTTGATGTAAAGGTTTCTAGT
CAAGATTAAATGTTATGAACTTATTGCACATCTCATCCAATTTGATGCTTTGCACAATGA
AGTAATTTACTTTGCTTACCACCTGATCCAATGTAACGCCTTACAGAGCACAGGAGACGA
AATCTACCAGCAGCATGGAAGTTCCAGCTAACCAACATAAGCCAATAAAGACGTAAGTCC
ATATCTAACTCTCGGACTTAGGATTGTGCTGCAATTTTCTCCCCTGATCCAGTGTAACAC
CTTACAGATCACAGGAGACGAAATCTACCAGCAGCACGAAACTTCCAGCTAACCAACATA
AGTCAATAAAGACGTAAGTTCACATCTAAGTCTCAGACTTAAGGATCGTGCTGCAGTTTT
CTCATCGATCCATCTTCTTTAGGCCCTCACCTCTAAAGAGGAAAGGAAAACCAAAAACGC
CGCCGAAAAACAAACGTAGAAAGGCATCAGGAGGTAGACGGTCCATTGGAGCTACCAGCG
AAGCTGGTGTTATTGAGTCAGATTCAGCCAGTTCTCTCGCTCATTCAGATTCCGACAAAG
ATGTAAAATCAGGTATGCTTGTTTTATGTGCTTGTTTGCATTTGTCGAAAATATGCACGT
CGTTTCATCATCGTAGTTGAGCTTAGCTTGTGACTGTTTCATTACCGAAGATGGCGACAA
GGATAAAGAGGTAGAGGTTGGCTCAGCTGAGAAAGAAAAGGCAGAAAAAACAGAGAACGA
GTCTGCAGAAGATATGGAGTTGGAAGAGAAAAACCCTGATGGCGACAGTTTGAGCGGCAA
GAAGGAATCTGATGACGAAACTCTTGTAAGCGTGACCCTCTTCAACCCTGGACTGGACCC
CTGATATATTTTCACTTTTCTGATTCTCTTCTGTTTGTTTTCTGTTGAATCTGCAGAGTG
TCTGGAAAAAGCGTGCATCGCAAGCGACATAGGCTTTACTTACTCTCAGTTGACATATGT
CGTCCTAGGATGCAGATATCAGAGGCAGTCGTCTGTGGAATGTGGATATCTCATTAATTT
GACCCTTGCAGCTGACAGTTGTGATGTAGAAAAATGTTCTTTGCAATAGCAACAGGTTAG
TTAGAAGAGCCAGCTGGATAGGAAGGATTTGCTTTGTAATGTTATTTAGGTGCTAGAACT
TGCTGCCGACTTCACCATGCCATTGTTTGATGGGCGTATGAATTCTTGAGGGTCAGATGT
GTAACATATCTTGTCTACCATTCTTTTGCAGGATATATTGACCGTGTCTTTAAAACTCAT
GTAGAAATGTTGTACAACAATAAATCAGTGTCTTGGGATTGTTTTGCCACTAGTGTGGTG
GTCCTCTTTTTGCCCCCCTATTCGAAGAAACAGATTTTGAATATGCGGTGAGAGGCACCG
ATTTTTTTGGATTCAGACTCCTTATTGTGCTAAGAGATCATGTTGAAGGGTTTGGATTTG
GACTCCATATTGTGCTGAGAGATCATGTTGAAGCTCATATCTGTTTGATTAACATGTGGG
TAGTATGAATTTCGAGAAAGCTTGATTCAGTTTACAACACATTGCCTTTTATATAAGTAA
ATACTGCACCTGTAGTCACTATAAGTTTCTATAACTACTACAGATGGTGAGATCTGAGTG
TCATCTTCTCACATGGTCCGTAGAGAAGAAATGTTGCTTTACCATGACATAACGGAACCA
TCTCTGTATTAGTAAGAAAAATACCTTTGTAAACCAAGGACCGTCAAAATAAATGGTACG
ATAATTTGATTGTTGACAAAACGAAAAGACCATGTTTATATTATTCTTATTTATATAACT
TATCTTATTCTTATTTATATAACTGTTACTTTACCGGTCTGGAAAAGCGACAGTCACATC
TTAGGGTCGTATGCTTGGAATTTGCTTTTCGAGACCGAGCTCACGACAAACTTCAAATGT
ATTGTGACATTTTAAAAAATTCTGAAAAAAATACATAGATAGATGAAGGAATAATACACA
AGTGTGTACATTTTTAGAGCTAAATAGGTTGAAATGAGGGCTATACAAAAAAACAAACAT
ATTTGAGGCTTTTAATATATGGTACAGTATTATTTATCTTTTCAGACTATGCATTTTTCT
TTTTTGTACAGGTCGTGTTTCAAAGTATTCCGGTCTGAAATTTTACACACATGAATTACA
CCCTTGTTTAGTTGTACAATTTTTTTGAGATTTTTTGAAACATTTTTTTTTGAATTTTGT
TATTTAAAAAAAAAATTGACCTTCATGGAGGCCGAATGCCAAAACGCCATTCTCGCGAGC
TCCCTATCTCTCTTTGTCTTTCCACTTCCCTCGTCCAAGAACAAATACTTCACCAAATTC
TTTGGAGTCCCAGCCCGGTTTTCCCCAACAATTACGTTACGACCACTGAACATCGGTTGA
CGAGCATGTTTTACGCACCGCTAATCTAGCGGCTTGTCGAGCATTTGACAAACTAACACC
ATCCATTCAAAATATGCAAGGATTTCCTTTCTCTCTTCCCATTCTAACTTCTGCTAGAAC
CCTTACCCATATCTTACATTTTCTTTGGAATTACAGGAAGCGGGAAGGTGGGGTAAGCGG
GTTCAAAGCATTATCAGGAAACCCACTACACACTGCATGCAAATGGGCACAGGCGTAAAA
CTGGAGGGAGACCAAGTGAACTGCCGTGTTCATGGCAACACACGCCGGAAAGTCAGGTTG
ATCCTCGTCGAAGCAGCCCTCGCACGCTTGGGCACCGCATGCTGCCAGTCTCGCTGGGTG
TAGCCCCTCATCACGAGCAACGATCCATGCTTCAGGAGGAATGAATGCTGCTGAGGTGCG
CCAACCTTGAGCCGCTTCCGGGCCGTTTCCCCAGATTCAGCAGCAGCTGGTAGATGATGA
TCAGCATGACTCAGTTTTAGTCCGGGCTACGAAGCTTATAGCTCTCATCTAGTAGCAAAT
GTGGCGAGTACCTTGCGATTTGGTATTGGTAGGCTTCTTCCTCAGAAAGAACTCACGCTC
GCATCCAAATGTGACCGACGCGATCTCCGGGGTAGGCCCGTAGAGCGGCTCGTCGTCGGC
GTGCCATGACACGTAATCTGAACCTCCCTTGTATCTGTTCAGCAGCAGGCTGTTGAAGTG
GCTCCCAGGGAGGGCTTCATGGACCTAATCAGCGTGGATGAGTCAGCAGACTGCTATGAA
GGCTGAATGCTGATAATACTTTCCAGATGTTACCTTTTAAATTAGAATTCCAACTGACTT
CTGCTAATGACAGGGTAGCAAACTAGCAATTCAAGCAGTCACTTTGGCACAGCTCTTACC
TCTTTCAAGATATCCTTCAGCACTGGGAAGTCATCCCAAGAATGTGCATGAGGCTGATGG
CCGCTGTACCTCAAATCTGTTAGCCCTCCATCTGCCACATAGCAGGTATCTCTGGGCTGT
ACAATGGTAAAAAAGATCAGATACTTGGATTAGAAGCTTCACAAGGGTTATATGACCAAT
CTGCTTCTTGTCAGTTGTCACTAGAGCGAATATCGTTATCCAACCAATGGGTCTAGACGA
TTAGTAGCGTTAGGAGGAACAGCGAATATCGTTATTGAACCAATGGGTCTCGACGACTAG
TAGCGTTAGGAGGAACACATCAGAAACTTTGTTAAGGTGGCACCAAGACAAGAGACCATC
ATCATGGTACCGTCAATAGTTAAACTGACATTGTAACATCACAGCTATGTTGCACTCCAG
CAAGCAAATTAGATGCGCATCCAGCAATTATCTTCAGCTACCAAAACTTCGATATGGCGG
AAAAGTTTGACAAAATGGATTACTAGCATGAGGCCAGCTCCCAATTAATTTTTACCGGGC
TTTAGCCCCTTCCCATTAAAAACTTAACGGAAATACATCATTCTTCAGAGAGAGGTTCAG
GAAGCAAGAAAAAGGGAAGGGAGGAGCGAGTTCAACGCGCTGATAGGAAGCCCATCACAA
TGTGCTCGAAACACATGCTATGGGACGAAAACTTATCAACACCAAAATGACCCTATCTAA
ACAGAAGGAAAGCTCAAGTTATATATCCCGACTGTTCTTCCGTATCCCAATTGTTGTAGT
CTGATTTTTTGCTTCAGTGTCAATCAAGCCTGCAAGAATTACCATATGTCTACAGCCAGG
GATACAGTGATGCTCATTCTCTAAATAATTTGGAAGCACCAAACCGCAAGGCGCAATCAA
ACGACATACTGATTGACACTGTGATGTACTTGTTACTGTACTTGTTGCCCCAAACAACGC
ACATCCACCACCCAAAGCATGGACAAGTGCAGAGTGCAGACCCGTACCGATGATCCAACC
TACCATTTCAAAATAACAGCACTGCGAGATTGCAAACCAATGGTAAAAGGCAAGGGAACT
AAGCTGCGACTGAAGGAGGCGCAAGAAATGGGGTAATGAGGATTGAGGGGGGGCATGAGA
GGGCGGCGACCTGGACGACGGAGCGGCCGAAGACGCGGATGGTGGGGCGCGTCCACGGGA
TGCGATTGTCGAGGTGTTCGAACATCTCCCACGCCGTCTCCCGCGCCATGAACCGCGGGA
TGTGCACCACCTCGCTCCCGCCGCCCAGGTCCGTCACCTCTCGCCGCGGCTCCGGCTTCC
TCCCTTCTCCTTCTTCCCTCTTCCCCTCGCCCGCGCCGGGGCCGGGGCCGGGGTTCGGGC
TGAGCTGGCCGAGCCGGAGACGCGAAGCCATGGTGATGCGGCGGGAAACGAAGCGGCGGT
GGACGGAGGGTCAGAGAGTGGAGACGGTGGCAGGAAGAGGCGGCTAGCATAAAGAATGTG
TAGCGGCCCCAAGGTGGCGGATTCCCCAGATAGTACGTAAATGTTCTACGGACACGGAAT
GGACCAGTAATCCAATTGTTTCAAGAAATAAAAATAACACGCTGCTACTGGCCGTTTTTT
TTCTTATATGCGGGAGGAGTTACACTGAAACATTTGGAGTACATAATAATCAAGATATAG
CCCTAAAAATTAATAATAACAATCAAGATATAACAAATTATGTTGAATAGCTGAAAAGTT
CACAACTTGCAAGAAGTTAACAAACTATATCAATCTCAATAAATTTGGAATGAAGGGACT
CATAAAAAAGCTAGAGTAATTAGCACGACACGTCGATCAAGTTACACTACGAGGCAGCTA
TACCACTTATAGTTATAGCACGACGAATCTATAGAACAAACGAGTTAAGCAAATGATTCT
AGACTGTCTACGAAGACTAGCAGCAGCAGCAGCAGCTTGCACACGCACAACGCATGCAAC
GCAACGACCGTCTCATGCAAAGACCAGCACGGCGGCACCCACTCCCACTCCCAGAGCGGC
GCCGACGGCGTGATAGCCACCCAAGGGCGCCGCGCGCGCGGAGCCGACGGGCCTCGCGGC
GCACGCGCGCCACCCGCGCCGGCCCCACCACGCCAGCGCGCGC