Map Locations of contig_61179 (9271 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_61179

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72170 2 1440 bp MLOC_72170.1 Available Available LOC_Os04g40950.1, FRAME:+1, EVALUE:0.0, 13104.m04007 protein glyceraldehyde-3-phosphate dehydrogenase, putative, expressed





CDS Structure of MLOC_72170






Contig Sequence (9271 bp)

>contig_61179 9271 assembly3_WGSMorex_rbca.fasta
TTACTTTCCGCTGCTATACTCGTTGACTTGCATGTGTAGGGTGCTCTAGACTTGATAGAA
TTGCTAAAACTTGCCAACCATTAAAATTAGGAAAACGTTAGGTTTTATTTTGCCAAGTAG
TCTATTCACCCCCTCTAGATATCCCTTCTTGATTCCTCATGACAGTAGGAGGTGCATCTG
TTGTACCGACTCTTCTCCTTATACGTTGAGGGATACGGGGAGCATCGTCGTTCATCGCCT
CCGTCGTCGAGCAGGAGAAGGCTACCACCGTCCTCTAGCAGGCCAAGGTTGTCTGGCCCG
TGCTCCTCCCACTCTTTCTCGACCACGATAACAAATCCAATTTTGGCTCGGACGAGAAGG
TGGCGCAGGTTATGCCGACAAAAAGGAAGAGCGACACGGGTGAGTTAGGGATTTCACACC
GAGTGAGGGGAATCACGAGAGAGTGAGGTGGTGGGGAGGGGGGGGGATTGGGAAATGACA
ACCTTTCGTAGCGTTACAAAATTTGAACTACACTTTTTAAACGCTATTATAAATGTTTAC
CGGGAAAGTGATTATTATTTTGAAGAAGAAGGCATTTATAATTATATATAGGGAATTTTT
GAAATTCCGCCTATGTGGCATCCGGCTCATGGGCGCTGAAACCACACAAGCCTTACACGC
CGCGGGTTGTTTGATCTTCTTGGACAAGAAGTTAGGCACTCGGGTTTTCAATCAAAGAAA
AGAGAGAAAAAGGAAAAATAAAGAAGCACGGCGCCGGTCGTTTCACCTTCTTGGACGAGA
AGTAAGCAGGCATGGCCCACCACCGCTCCCTCCTCTCGTGATTATCGTAGCCAAACCCAG
CAGCGGTCCTGGGTTTCCATGGGCTCCAACGTTCGCCCCGTCCCACCCACCCACCCACCC
ACAGGAACCTTCTCGAAACCATCGCCCCGCTCCTCGCTCGACCCCACCCGTCAGCCAGCC
AGCCAGCCAGCCACCCATTCCATTCCCGGTAGCGGAGAAACAGAAGGCGATCCGCGGCCC
GCGCCGCTCTGCGGGCCCCTCCACCCAATGAACCCCCCGTTATATAAATCCTCCCCCCCG
GTCTCGCTAATCGCATCGCAATCTCGAATAGCTGTCCCAATCCTCGATCTGTTCTCGACC
CTCCTCCGTCCACCGCAGCTTCAGATTTCCCCATGGGTAACCCCGTCACCTCGAGCGCTT
ATTATCTCTTGTACTACTTTTCGATTCCTGGTGGTGCTTTGGCTGATTACTGTTCGTTCC
TTTTGCTGGATGCATTTCCGTGCCCTGCGCAGCTCCCATCAAGATCGGCATCAACGGTGA
GCTCGATCCCCCGATCTGATCTGGTTTGCTTGTCCGTTGGCTGTTTCCGTGTGTTCATTT
TCTCATGAATGGATTTTTGCTTTCCCCTGCAGGTTTCGGCCGGATCGGCAGGCTTGTGGC
CAGGGTTGCGCTCCAGTGCCCCGATGTCGAGCTCGTCGCCGTCAACGACCCGTTCATCAC
CACCGACTACATGGTATCGTTCTCGATTCCACTCGCTCATGAGATCTGTAGGTGTTTATG
GTAGGTTCGTTGTGTATTCGTGCTTGTGACACCCGTTTACGGGCTGGCGACTGTCACCTT
AGATCTGTTCTCGAATAGTTTGGATTTGTTATTTTCGTCACGCGCTCATGCTCAGCTCCA
CAACACCAAGCACGGTTAACTCGTTATGCATTGGAATCTAGGTTCTAGTGAATGTTGCTA
CATCTGAATATAAATCATCAGTTTTGTGATGGTACTGTTAGATCTGCTTTGCAAGTGCTT
TTTTGTGTACGTTAATTATATTCCTCACATCCCGTGGAGAATATTTTTACAGTTCTGGAT
TCGAGGAATCTATTTGTTCCACGCAGTGACTATTGTTCTATTGTGGTACTATTTAAAATA
GATGTAATCTCTGGTGGTTTATATACATGCAGTCTTCAGTGCCAGTTGCCAATAATTAAC
TAAAGTGTAACGCTAGTTCCACTTGTCTCTCGTTCATATTATGGTTCTGAATTACGTGCT
TGCAACTTGCAGACCTACATGTTCAAGTATGACACTGTCCACGGACAGTGGAAGCACCAT
GAAGTTAAGGTGAAGGACTCCAAGACCCTTCTCTTCGGTGAGAAGGAGGTTGCTGTGTTT
GGTTGCAGGTTTGTTACCATTTATTTTGGTTCCCATGCAGTTAATTTCCATGGTAAGCTG
TACAGGCTGATCAACAAGCCCTTATGTAGAAACCCCGAGGAGATTCCATGGGCCGCTGCT
GGTGCTGAGTACGTTGTGGAGTCCACCGGTGTTTTCACTGACAAGGACAAGGCTGCAGCT
CACATTAAGGTAAATTCTTTCACAGTCTCCATTTCATGGTAACTGAACCTTTCTTGTGTA
TATTTGTGCTAAATAGTTTCCTGTGTTACCACTTACAGGGTGGTGCCAAGAAGGTCATCA
TTTCTGCTCCCAGCAAGGACGCTCCCATGTTTGTCTGTGGTGTCAACGAGAAGGAATACA
AGTCAGACATCGACATTGTCTCCAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTG
CTAAGGTGTGGACCGTACCATTTTGTGCTGCTAAAACCAATTTGGGCAATGGTATGCTGA
TAGTTTCTTTTTTTTCAGGTTATCAATGACAGGTTTGGCATTGTTGAGGGTTTGATGACC
ACTGTCCATGCCATGACTGGTAATGCATTGCACTGGTTATGTTTCTTCCTGATAGCATTT
GATATTTATCTTTTGACTAATGTGGCTGAAATTGGAATTTCAGCAACCCAGAAGACTGTT
GATGGTCCTTCAAGCAAGGACTGGAGAGGTGGAAGGGCTGCTAGCTTCAACATCATTCCA
AGCAGCACTGGTGCTGCAAAGGTACACTTCCGTTTCCCATCTATTATATCATAAGTTGTC
TGAACGACCATTAGTCTTCATTTCTTATAATAATCTATTCAATGGATCACCATTTCGATT
TCCTGCAGGCCGTTGGCAAGGTGCTCCCAGAACTTAACGGAAAGTTGACTGGAATGGCCT
TCCGTGTTCCCACTGTTGATGTTTCTGTTGTTGATCTGACTGTTAGACTTGCCAAGCCAG
CCACCTATGAGCAGATTAAGGCTGCTATCAAGTGAGTACTGCTAACCAGGAACAATGTAC
TTAGTTCCGTCCGTGTATGTGTATATTGTTTCTTATTTTAGTATTTGTATTGATGTGTAC
TTATTTGCTTTTACAGGGAGGAGTCTGAGGGAAACCTCAAGGGCATTTTGGGTTATGTCG
ATGAGGACCTTGTTTCCACTGACTTCCAGGGTGACAGCAGGTGTTTACCATTTCACTTTG
ACAACTATGTTACTTTATTTTGGTGCATTTTGATTGCCTATATCTTCATAGTGGCTACTC
ATCCGACTTGGCTAATGATTCCACTTTACTCATAACAGGTCCAGCATCTTTGATGCCAAG
GCCGGGATTGCTCTGAACGACAACTTTGTCAAGCTTGTCTCATGGTACGACAACGAGTGG
GGATACAGGTTAGTGGCACCTCTTATATCCCTCCTGCAGTCATCTCATCAATGCAGAAAT
CATCTTGCTGAATCGTGAATTTCTACCTTTGCAGCACCCGTGTGGTCGACCTCATCCGCC
ACATGCACAGCACCAAGTAAATGAGCCAAAGCATGAAGATACAGGGGAGTGTGGTTTGCC
CCAGAGAAGAGAAGAGTGTACAACCTCTTCCGAGAATAAATTTTTGTATGGAATTATGGC
AACTAAAAAAAACCTTTTATTGGATGTATCCTGATGGTTGGTTGAGCTTAGCGGCTCACA
TTTTGGTGGTATTATGTACTTGCTTGAACTAAATCATGAGTTATTTTCACTCATCGTCAT
GGGTTATCTCACCTGGCTTGTGTCTTTCGGTTGTCATTTCGTTCACTTCGCAAAGTGTCT
TTATGGTTTTTTTTTGGTGCGGAGTGTTCTTACGGTTACGCTCTGTCTTCACGCTCGCTG
CATGAATGAAATTGTCGTGGTCATGTATGCTCCATGTATGTTAGCGAAGCAGCAGGGCAA
TTCTGAATTAACTAAAGAAATAATCGGGGCCAGACCATTTCAGCTCCATATGGACGAGAG
CAGTAAGAGTTTTATAGAAAGGTCGTGGGCAGTCGTGTGTAATCGTTATCCACCATCTTG
CATAAAAGATCCGTGAACAATGGATTTCATCATCCTATCCTTTAAATCAAAAGGATCAAA
TGAGTACGAAGTATTGATCTGTGAATAGGGATGGCTACAAGCGGGAATACTGGGGGCAAT
GAAGCCCTTCTTCTCCTTCTATACTAAATAAACAATCTAATTCTAGGAAGAGTTTACTTA
AACTTAAAAGGAAGGGCGGTTAGAACAAAGCAAGGGATGACCACTTTCAATGCGCGAAAT
CCGAGTTAGAGTGCGAAACTTCTTGTTGCAGCCGTTTTATTCGCTGCTTGTTACTTTCGA
AAATGGAAGATATGCTTGTTACTTTCGAAAATGGAAGATAAGAATAAAGAAGTCTTGCAC
GAGGGCGGCCTCTTTCCATGCCTTCAAATCCTTTTGCCACACTTTCAGATCTCGAATATA
CAATGATGAATTCTGACAATCTACGATCATAGAACGCAATAATATGAATGTCTCTCACGA
GCCCCAAAGAGTCAATCAAGTATGACTGCTTTGTTGGCACACGGAAAGGTAGAACCACCT
TCCGCCATGTCAACCGCTCACTAGGCTTCTTGCTGCGGTGAAGTTGCTTCATCATCCGGC
TCAACATCAGCCTCATCCCCTCCATTTTAAGCTTTGGTTATAGGTAAAACTCTATTAGGA
TAAGGGTATGGACAACATGTAGAGGTATGACATCATATTAACCCATACTCATACCCGTAT
AAAATCTTTGTAAACTTAATATTATCCATACAATCTACACTATATCAATAGTTTGTGAAG
TGAAAATGTATGACTATATGTTGTTGTTTATGATTATATGATGTTGTTTATAAGTATGTT
ATTGTAATCTATTTTTATAAATTATGATTATATGTTGTTGTCTATGAAGTTGTTCCAACG
GTTGATTTACAATGTCGGGTAACGGGTATACCAATTTGTAATGTATAAGATGCGGCTCGG
TAAACATTGCAACACATACAAGAGGGATGGGTATAAGATTTGGCTGACACCCGCCACAAA
TTAAGTTACAAGATCCACACACCATTTTTTTAAATCATTCAGAAGGCACGGTCCGACTAC
GGACAAGATAAACGAAAAAAGCAATGTTCCCACCTCACCTAGTCATCGGGATACGTCACG
TATAGCCGACCACTGTCCTCGTCAAACTCTCAAAAATTGTACCCGTTGAGAGGTATGGGT
AAGGATGATGGCTAAGCTCACGGGTAAGGGTATGGGTTGGCTCCACCCATACCCTGCGGG
TGCCATCCCTATCCATGAATAGTCGTGTCTCATTTGCATGGGCAACGATCAAATTTTACC
TTTTCTATTTCCATGGTCGAATTCCACACATTTCACAAAAATTGCAGCAGTTCTGTTCCG
CTAGATCTCCCCTTACATGCAATGATCATATCCATCGAGTCCCGACGCCATTATGGTGCC
ACGTCGCGCGACGCTGGGACACTTCACGTCATGTCGATGATGTCATCCTCCCATGTCAAT
TTGTCACGAGCCATTAGAATAACTCCAACCGGCCGATCCAAACAGATGATTGTTTTATAT
GTTTTTTGTCCGTTTGGGTCGGCTGCGAGCTCGACATTCGTTCAGTTTTCGTTTTGGGTC
GGTCATGCGTTTAATGCATGAGACCCATTTTATGTTCGTGTGCAAATTTAAAAGTTAATC
ACACAACCTTCTTGATGCGTTTGCTAGCGGTCGGTACACATGCGTGTACTTAAAAAAGTT
TTTAGTTCGATCACGCCGTCCTGCCCGGTGGTCATGCGAGCACGCTTGCTGGCATACAAA
AAGATGGCATGTGCGGCCATTGATGAGTGCTCGTCGAACTTGAGCATGTTGGCCTGCATC
TTCTCGAACCATGGCCTCTTCCTCCGTGATATGGTGTTGAGGTCCACCTTCATGATCACC
ACCCCCATCATCATGCTAGCGAGGGCAACTTCTTTTGCCTTGCTCTTGGCATTGGCGGCC
TCGATATCGAGCATCCTCGTTTGCTTCTCCGCCTCTATCTCGAACATTTTCGCTTGCTTC
TCCGCCTCCATATCGAGTCTCCTCCTTTGAATCTCCATGAAGGTGTTCACATGATCTTCC
TTGTCTTTCCGGCGCTTCTCCTTCTTTGAGTCTTTCTTGGTCATCATGCCCTCCATGGTA
GCAACGAAGGCGTTGCACGCCGTGTCCCGCCTGTCCTCCTTCTTGGAGTTGGTCTTCCCC
TGCGGCCGTGTCTTCTCGCCATCCACAACCTCTTCCTCGTCTTTCTTCCCATCATTCGCC
ATTATGGTGGCATATTGCGCCTTGAACTTCTCTTCGTTGATGACCCTCCAACAATGCGAG
AGGTTGGATGAGTTGACTTCATGTTGGACCCTGAAAGCCTCCAAAGCTTGGAAGGCCTAC
AAATGGATATCATGCAAGCATATGGGCAAATATGTATGAAAATGGACACGCAAAACAGAA
TGAAAACGAAGCGGTCCGCATGCATACCATGTCTTGTATGCCGGTGTCGCTCACGGGGCG
AGCCTTGATGCTCTCAATACTGACACAAAACTTATTGCACTCTTGTTGCATTTGGTAGAG
CGGAAACTTCTTGCGCTCATGGAACTCACGGTGGACACGAAGCCAAAAGGTCCATGCCTT
TTGTTCAACGCCGACCTTGGGGTCTTGTCCAATGTCCTTCCAACAGTCACAAAGGAGCTT
GTCCTCCGCCGCCGTGTATGCCTTCGTGCGCTTGCTCTTGTGCTTCGGCTTTGACCAGAC
GACTTGGTTGGCGAGCTCCTCCTCGAACAAAGGCTCCCCGTCAATGTCAAAATCGTCCTA
TTCCTTGAGGACGTAGTCCTCCGGGAACTCGTGATCGAGCGGGAAGCCGTCCACCTCCAC
GACAACCTCATCATGCATGAAGGCGTCATGTTCATAGGTGTCCGGCCCTCGGCCGTCCTG
GCTTTGGGTCTCAACGGGATCGTAGCCAGCCGTGTTTGGCACAACCGCAACCGACGCACC
ACCCTCGAAGATGATGCTCTTCATGAAATGATTGACTGTCTCGTCGTCGGCGACCGCAAT
CATTGTGTCAAATAGGTTGCGGGCGCCGGGTAGCACGTCGGCTGGCATATCCCGCGTGCG
TTTCCTTGTCCCTCCATACGATGAGGCACCGGCCACCGGCATGGCGTTGAGGTCGATGGG
CGCAGGCGCAGGGGTGGAAGTAGGCACCACGCTCACCGCCGGCGAGCATTCCCTGTAGAG
TTGGGAGGCTTGCGGGTAGACGTGGAAGTCGGGACCGGGTGCATTGCCGACCAGTGCGGC
GACTCCGGAGCCGGTGCTGGCCGCATCCACGGTGGAGGCGACGAGCCCGTGATGGCCAGG
GTTTAACCCTAGGTACAAAAGGGCCTCCCTCATTGTTGTATCGACGCGGGTGTTGGTGGC
CTCCTGCTGCGCGGCAGCGATGGCGACCGTAGGTTCTTCCCTTGCGCCCGCCGCATGCCT
CAGACCCTTCCTGCGGCGTCAGCTTCTTCTTGGGCGGCGCTGCACGGCTCGCTCCTATGG
CGTCAACTTCTTCTTGGGCGGTGTTGTGGTCTTGCGATGGGAACGAGGCATGCCTTTGTC
GGAGGGGGAGGAGGGGGCGAGGGAGCCGAGGCCGGAGACGACATCGACATTGTCGTCTAT
GGCGCGCACGGGCGGCACGTTTTTGGAAATTGGAGGGAAATGGTGCGTGCGGGGGGGCGA
GGGGGACTTATTATCGCAGGCCGCTCGCGTCCACGCCGACGCAAATGGGCCCAAATTTGG
GCCACAGATGGATCGGCAGGCGGACGAAAAGATGACTCGTGTCCGTTTGGGTTGGCGCGT
TGGGCCAACTTTTCTATCCGTGCATGGACATAATGGGTCGGCGCATTCGAGTTGCTCTTA
CAAGCCCACTTTTGATAATGCACAAAAGACACCATGACCAACGTGCACTCCAGAATTAGC
CAAAAACATTTACTTTCTCTTAAAAGACTTCCTGTCGTTATCTCATCAAACAATTGTTTC
CTTACAAAATTATGAGTGAAAAAATGGGCTAAAACCTATTTTGGGAACGATCTGTTTTGA
CTCCAAAAGCAGCGATCGGCCGCCTCGTCCATCGACACGTGCCCCTACCACATAGCAACA
ATGACACATGTTTTTCCTTGTCCTTTCATCTCATCATCACATGTTTAACTCTACCCCAAA
TCAGCGCAATGAACCTCTCATTTTCTCTCCTCTCCCAAATTCTCTTTCCTCACCATCTCC
TTCCTCCAACCATGGTATTATGCCTCTCTGCCGCAAGGTCCACCGTAGTCATCCTCGTTG
TTGCAAGCGGGCGTGGGCTGTTGCATGATGCCCGTCTATGTTGTGACCGTCGATGGCGGA
TACTCCAAGCTGGTTAGGTAGTGCCGCCGTGAGCCAATAAATGCTACAAGGGCTACATTG
GCGGATGTTGAAAAGCAAGAAGTGGTGGTTCTTGATGACCCGCAAGTATAAGGAATCAAT
CGTAGTCCTTTTGATAAGTAAGAGTGTCGATCCCAACGAAGAGCGGAAGGAAATGACAAG
NNNNTTTCAGCAAGGTAATTTCTACAAGTGCTGAAATAGTAGCAACAATATGTTTGATAG
CAAGATAATTGTAACAAGTGACCAGTAGCAATAGTAACAATAGGTGCAACAAGGTAGCCC
AATCCTTTTGTGGCAAAGGACAGTACGAAATGGTTTCTCATAATAGGCAAAGCATTCTTT
AGGGCACACGCGAATTTCATCTATTCACTTTCGTCATGTCGGGTTAATTCGCGTTTGGTA
CTTTNNNNNNNNNNNNNNTGGGTGGACCCGTGCTTGGGTGCTATTATTACTTGGACAAGC
TTCCCACTTATGATAAACCCTCCTGCAAGCATATGCAACCACGAGAAAAGTATTAAGAAT
AAATTCTAACCATAACATTAAACACAGGGATCCAAATCAGCCCCTTACGGAGTAGCACAA
AAACTGAGGTATAAGTTTGTGTCACTCTCGCAACCCACCATGTAATTACTACTCCACAAT
GCATCCCCTTAGGACCAAAGATGGTGAAGTG