morexGenes - Barley RNA-seq Database

Contig contig_6111

Source Contig contig_6111

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_6111 (6416 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_6111

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72130	1	273 bp	MLOC_72130.1	Available	Available	None
MLOC_72131	1	1421 bp	MLOC_72131.1	Available	Available	None
MLOC_72132	2	1145 bp	MLOC_72132.1	Available	Available	LOC_Os06g09420.1, FRAME:-2, EVALUE:7e-31, 13106.m01011 protein B3 DNA binding domain containing protein, expressed

CDS Structure of MLOC_72130

CDS Structure of MLOC_72131

CDS Structure of MLOC_72132

Contig Sequence (6416 bp)

>contig_6111 6416 assembly3_WGSMorex_rbca.fasta
GTCAATGTCTCCGCCCCCTCCCCCTTTGATCCTCTTATAACTGCGTATAATTTATGCTAT
ACGAGGTTATTCCGCGGCCTCCTCGGCTGTACCCGCCGAGCCGGCGGCGCAGCCTCCCCA
CGGCGCCGACTGCCGGGGCTTGGCCGCCGCCGAGGACCCCATCAGGAGGGTCATGTTCTT
GGCCCCATGGGGCCACACATAAACGAGAAAGAACGCATGCATGCGTAGGCCGGCCATGTC
TTGTCTTGGCCGGATCTGCAACTGCACCTGAACAAAAACCATGGAGTACTACATACATAT
ATATATGTGGCCATGCATATGAACCATGAACATGAACTCATCAAGGACTAATGAAAAACT
AGATCGAGATGGGGCATGATCCGAGAGAGATGTGCTTGAGTAAGTAGTTTATGTTTCTCT
TGGCGGTCGAGATGCATGGGGAGAGCTCGCCTGACGGGTTCGTGCCTGCATGTGGGTGTT
GCTGCCTGCCTGGGTTGAAGCTGCGCAAGAGCTGCAGCTTTGTTGTAGCCATGAAGGCAT
GAACCTGTTTTTTTGTTTCTCTCCACAGTCTGTACCAAGAGCCTGTGAAAAGCTATGTGT
GTATGAATGAGACTATGAGCTAGTAAAAAACTCCTCCTTTTTTCCATGGCATGTCTATCT
CCCCGCTTGTTCCTTGCCCCTGTTAGTTTCTTCCGTGCATCCAAAACCAAAACCATGGTG
TTGTGTTGATTCCTGCAATATGCAGAGGAGGAACCAGCCATGGTGATTAATTCTAGTATT
TGGTGATGCTAATAAGTTTGCTGGTGTGTGGACTATGGTGTGATCTTTCTTCCTTGACCT
TTTTGATCTGGAGAAGGTTGTTGGGAGCCAGGCTGGATCCTGGAGTTCATCATGCTTTCC
TGCAGGGTCCAGATCACAAGGGAAGGGAGGGTACTCTTTGTCATATGTTTGCTTGTTTGT
TGTGTGAGGCCATGAGCATCTTTTCCATGTCTCCTCATCTGGAGAAGGTTGTTGAAACAT
GCTCATCAAAGACTAATGATCTGAGGAGTTCATGGCCCTCTCCCACTCTCTCTCTCTCTC
CAATAATTCACAAGTAAACAAATAAGAAATGAAAAAGGAAGGAGACTTTGAATTTGATTC
CTCTGTTCTGTAAACTAGTGGACTGAGAATCCTATTCTAGACAAGAAAGAGAAAAAAAAA
AGCCTCCCACTTGCAAGGACATGCCAAATCAGAGTGGGCCAATCACCTTGCTCCCTTTCC
ACAACACCTTATCTTATCTTGAGATATCCACAGAGAAATTGGCGCTGATATTAGCAAATA
AAAAAGAGAGAAAAAGATATAACCAAGGTGCATGATAGGCTTTGATTATGACACCATATG
TACATGGGAGTTTGTTGTCTAGCTTGAGGCGACATCCCCCAGAAACTGGACTTGTATGAG
TCATGCTTTCCAGATGTCTCCTATGCTCCCTCACAAGGCAGAACTAGCTCAGAGATCAGC
TGATTATTCACCATTTTGGTTCTAAGTTTGAGCACATATTTATTACCCTCCTTCGACTAG
CCGCTTCGCCGAAGGAGCGTAACGGAAAAGAAGGAAACCGACGGCAATTCACTTTTGATA
CTACTATATGGTTTTCAGTTTTCACACACACAAAGAAAGAACTTTGGTTTTATGGGTTTC
GAGATGGTACTAGCTAGTCAAACTTTTTACAGAACAAGTTGAGTACATGTCAGTCTCTTG
ATCATACAGTTTGTCCACCAACTGCGCACTGAACCGAAAAGGAGCACAAAACTTCAAATG
CCAGCCCCGCTACTCTTATCTTGATTTCTTGACTGAAAACGATAGTTCAACTTCTACCCC
TAACTAGCTCGAAGAGCCCAAAATTTTAGTGTGGCTTCTCTATCGCTGATGCCCTTTTCT
TTTCTATTTTTTCGCCACACTGTCGCCTATTCAGTCACAAGTTGAGTTGAAATGATATGC
TAGAAAAGTTGTGAACAATGTTGCAACTTCTAAAAACAGCGGTAGTATTTAGGTATCCTG
ATGCACCACCACCCCTCCAGATTATCAGTCATCATGTTCATAGGAACCAGAGAACTATCT
ATCCAGCGGTGTAGCCTGCAAACAGTCAAACCACACCTACTTAGCACAAACACATTGCAT
CAAAATATGATCAGTGCTGTCTTCCTCTTGGTCGCACAGGAAGCATGAAGAAGGATGGAT
GTTCCTGCTGCCCTCTTCTCAGCCAACGATCAGAGGTCCATAGACGATACTGAAGCGCAA
GCCAAGTAAAAAAAATAATACAATTAAGCGGCACCCAAGATTTCCAAATAGCCTTGGCAC
AAGCAAATTTGATGGCCCCCTCGTTGAGCATCTGGTAAGCAAGCAGAGGCGAATGAATAA
GTAGCACTGCTGCTCCACTTCCAGAGCACTTCATCCTTCACCCCAGGAATTGCCTGAATC
CCATAACTGAATGAAGTGCACCAAGCCATCGGTAGGGAGCTCATTTGGCACATCCAGCAC
CCAGTGATGCAAATGTGCCGCCTCCCTAGCCATCCTCCTGTTGGTTGCGCACCGTAGCTA
GCATTGACCTGCGCTGTGACGATCGGAGCAATATCGTCGGCGCATCTCCCATTGATCCAG
TGATCCTTCCAGAAGAGGTCATTGTCACCAGAACCTAACTTCCAATGAACCAAACTGCAG
AATAAGGGCCAGATCCCAGGCCATGGGCAACCCTTGCCAAGGTCTAGCCAGATATGCGCA
CTTCAACCAAGGCCATCGCAGTCGGTATACCAGACTCTACAAGTTCAAGTCAATTACTCC
TCCCAAGCCACCAAGACACCTTGGCCTGCAGACTTTGCGCCAAGCCACTTTGCGCCAAGC
CACCGGGAGATTTCCCGCTATGAATATCTTCAGAACCAGCCCAGAAAAACGCCCTGCAGA
CCTTATCCACGCGGTCAAAGAGCCCACTTTGGGGGCTCAACCACCAAACCTTTTTTTTCC
TTTCACAAGGACTTGTGTCAAACTTTCAATTGCATATCATAAGGAATTCAAAAATGATGT
GTAGGCCGCCCATGAATCACCGAATTGACCAGAGTGAGGCAAGCACCTCGCACAATAAGC
CCACGTTGCCAACCAGGCATGAGCTTCAGCAATTTGTCAACAATCGGCTGCCACTGGGAT
CTAATGTATCTCGTAAGGTGATTAATAGCGGAAATCGCCCATCTTCCGCGGCAGGGCAGC
AACAACTAATCCCTGATCGATCTTGTCTACAAGAATTAAGATCGCCCATGACTTGATGAA
GTTAACATTCAACGCTGAAGCTTGTCCGAAAATCCGAAGCTCCCCGGCAAATATCAGACC
CATTCTCAAAGGCCTAATAAACAACACAACATCATCTGCATAAATCGAGAGCCTTTGTAG
AGAGGTGCAAACAGGCATCGAGCTTATAACACCCAGCTCATCTGCTTTGGTGGCAAGAGC
AGTGAGAAGCTCCACGGCAATGCCACGAGGCGAGCGAGCTTCAAAGCAAAACTTCGGCAA
GCTATGTCGGTCTAATATCCAGGCTAGGATAAAATCCTTAGCCTTGCGCCCATTAGCCAC
CAAATGAAACAAACAAAAAAAAACCTTGTGTTTGCATCACCATCTTGCAACCATCAAACC
CGAGCCGAAAATAAACAGGAACAGCATGAAAAAATGCACTTGAGACCATAGTCAGACTAC
AACCGTTTAGTAGTTCAACCAATACAAGGCCTGCACTACCTACTACTCCCATCTAACCTA
TGTTATAATGCAGGCCTGCTACACTGGGTTCGAGAATGCGACTCTACACGCAACCAGCAT
GCAATCACGGTAGGCAACTCCAACATCAGCCAAGAGCGTGTTTCTCCTACAAACTGCAAC
AAAAGACATATTTGACATGTTAGCATCTATACGGATAGACAAACTGTATACAAGAGCATT
TTATTTAGTATTACTGCGTCCCAAATTAATTCTAAGGGGAGGGCGTACTACAGAAGTACT
GATCAAGTCTAAGGGGGACGGCTGAGGCAAGACAGGTAGAACCTTTGCAAAGACCATCGG
GTCTAAGACAACCTGCTCCTACCTATCGAGAAACACTATCCAGACAGTTTTTACTTTCTA
CGCGCACATCTAATATGTTCATCAGTTAGTTCAGGCGTTTGGCCACTGAGAAGTCCCAAA
GTTCCCCGTGTATTGTCATGGCTAGCATAAGTAAGCAACAAAATAAGGTTGCAGTTTGAC
TCGTCAGGCTCGAAATCTCAAAACAATAGGGAAATGGGAGAAACAGCCAGTGCAGTTCGT
CAAAACATCTAGCTCCAGTGTAGGACAGACGGTTATGTGTGGCCATAACTCATAAGCAAG
TGAGTTTGTATTTTTCTTATCCACAAACTGAGCTTGGTCAATTATGAAATCGATGCCTTG
CCAAAAGATAAAGAAATATTGAATTCAAGTACGCTTCAACCTAAGCGAGAGATGGAACGA
AATTCAACATAGGAAAACAATGGTAAGAACAATGTACCTGCTCCGACCGAACAATGTATT
GGAAGCACACATCTTCATTACTCTTCATCCTCAGATTCATCAAAAGTTTGGTCACTTTTA
TAGTCTGGGTTTGCTCTAAAAATGTAGACCTGCATCATTTATACATAACTAATGAGGTTG
AACCATATGCACTTAGCAGTGAGATAAAACGACCTCCTTGGGATTAGGCCTTAAAAGAAC
CCCTTCCATTATCTAAAAAGATATGACTCTGGACAATTAAAAGCCTATGAATGGAATAAT
TCCTAGAGGCCCTTTTAGATCTGGTTGGAATGAAGGTATATACATTAGGGCTGCTGAGCA
ATAACATTGTTTCCTGCAAATAAGCAGAATTAATTGGCAGTTCAAACAGGTCTAATTTCT
CATTTATGAATAAGTAGACACAGCTCACCAATCTCAATTATGGATATGACATATAACCCA
CTTTATAATTTAAACCTAAGACACACCAAAAAGCATTGAAGTTTGATACTACGCAATGAC
TCTAGTACTCAGTCCAGTTATTATATAGACATAACAGGTTTTTTGTTTTCTCATGTACAT
ACACTTAAAGACAATTGTTTCGACAGACAAAGACATTAATGAATACGACACCACCGAGAA
ACTTTCAGGAATGTTCTAGAATCGTAAGGCCGCATTTGCTACACAGCAATTCCACAGAAG
TTTCGGAAGAAATCAAGTTATATATGCACTGGTACTGAATGTGGAGTTCCTAAAAGTAAA
AGTATGGCGTTTTTATCCATGGAATGGAGGACATGCTGAATCTCACCTTGAATTTTGCCC
TCTCTGTCATGTGGAAGACCAAGCAATCGCCATCGACAAGGTCATGGTCGAAGGCGAACC
CTTTCCACCCCTTTTCGAGATAGTGACAGCGCTTTTTGTAGGCATTATACATCATGTGGA
ACTCGTCATCCGCCTCATCCACCACCACGACCGCCTCACCATGCGCCGCCGGGAGATACT
TGCGGAAGTCCCTCGGGATTCGCTGCCACAATGCATATAACCCACCAAATCAATCAACAT
CCAATCCGATCCAGATCCAGTGCAAGTTTTCCTGCTACGATACCATGTGGACTTCATTGA
TGGCGAGGCTGTGGGACATGGGCTTGACGAAGGCGGGGCAGCGGGAGCGGTGGATCCGGC
GCCGGAGTTCCTCGGCCTTGGCGATGGCGCCGGCCCTCTGCTCGTCGGTCGGCCCTTTCC
GAACAGCGTATGCCTCGTACACTCCACGGTAGTCGCGCTGCTCTGCGTCGTTGAGGTAGT
TGGGCTGCTCCGGGAGGCTGGCGACGCGGCCGGACCGCCGGAGCTCGCCGGGCTCCGGGG
CCTTGGGCTTCTGCGGCACCAGACATTATAAGTTGGGGGGAAAGGGAGATGGAAGACCGG
AGGCAAGGAAGAAAAGAAGGGAGAGGATCTGACGAACCGGCCTGGGCTTGGGCTTGGGCT
TGGGCCTGGCGGCGGCCTCGCGGACGGCGGCGGAGAGGTGGTGCACCCGCAGCTCCTCCA
GCTTCCGGCGGTTCTCCTCGATCTGCCTCCGGCGCTGCTCCTCGTACGAGTTCGATTCCG
CCATTTCCCCTTCCCGGTTCTGCGTCCTCCCCGCCGCCGCTGCTCTTCTTTTTCTGAGAA
GATGACGCTGCTCTGCTTGGGAGGTGAATTGAGCATTGAATGGGGAAATGCGACGTGGGC
CCTAACTCGTCTCCTGTTGGTCACCGTGCGACCGGACCTTTTCGCAAAAATTAAGAGCAT
CCACCGCCTCAACATGCAAATCCGTTCTCTTAAACGACCGCGGGATGCCCGATCACTTAT
TTTTCATTCACTAGTAACCGTGTGCACTTACAACGCACGTGTCGATCAAAGCATCT