| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_61082
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_72113 |
2 |
2270 bp |
MLOC_72113.1 |
Available |
Available |
LOC_Os06g41610.1, FRAME:-3, EVALUE:8e-20, 13106.m04345 protein retrotransposon protein, putative, unclassified |
| MLOC_72112 |
4 |
1380 bp |
MLOC_72112.4 |
Available |
Available |
LOC_Os05g05600.6, FRAME:+2, EVALUE:2e-43, 13105.m00590 protein ATA15 protein, putative, expressed |
CDS Structure of MLOC_72113
CDS Structure of MLOC_72112
Contig Sequence (5853 bp)
>contig_61082 5853 assembly3_WGSMorex_rbca.fasta
AGTAAAACAAAAGTATCTAATTTAGGCAGCATCATATGTCATGAACATTAGAAGGATTTC
TAAGAAACGAAAGTACCTGGTAATTCAATTGGCGTTCGCGAGCTCTAGTAATTGGTCCAA
TATGTATATCAGCGCGGGCTGTTGGTGTAACAATGGTATTGATGGCCTCATCAGATGGGG
AGGTGCCAAAGAGTAACTGGTGGGCAGCGAGGATGACATGGGCGGATGTTGAGAAGAAGG
GATGCCGTGGCAAGCGTGTCAGGCCAAAACCTAGGAGGCACATTGGCGTGAAAAAGAAGA
GTGCTAACACAGTCGTTGAAAGTGCGGAGTACACGTTCAGCGCGGCCATTTTGCCGCGAT
GTGTAAGGACATGTGAGGCGAAAGATGGTGCCATGAGAAGTGAGGAGATTGCAAACAACA
AGGTTATCGAATTCTTTCCATTATCAATTTGGAGTGTGTGTATGGGACAACCAAATTGTG
TGGCGACATAAGAATAAAATGTCGTAAGAGTAGATAAGATATCAGATTTGCGGCGAAGAT
GAAAAATCCACACATAATGAGAAAAATCATCTAAGATCACAAGATAGTAAAGGTAACCAG
TGTTGCTTGCAACCGGAGATGTCCATACATCACTATGAAGTAATTGAAACGAAAAAGAAA
TAGTGGTAGATGCACTAAAGGAAGACGAACATGCTTTCCAATAAGGCTAGCATGACAAGT
ATGATTGTCAATCTTATTACACGTGAATGAAAAGCTCTTAATAATATGATGAAGGGTGGC
AAGTGTGGATGACCCAAACGAGCGTGCCAAAGGTTTACACCGGCGGAGAGAGCGACGGGA
GCGCCAGAGGTGGTGGATGAAGAATGAACCAGGTAGAGCTCATCGGGGCTGTCACACGGT
GAAGAACCATCCGGGAACAGGCGTCCTTAACAGAAAAACCAACAACGTCAAATTCAACAG
TGACAAGACTGTCACGTGTAAGATAACGAACAGAAACAAGATTTTTAACACGGTCAGGAG
ATACGAGTATATTAGACAGAGATATTGGCATGGAGAAGAGGGAGACGAACTATGACCAAT
ACGAGTGATGGGTAAAGAAGAGTCGCCACCCACTGTGATGCGCATGGAGGTGTTGGTGGG
AAAGTAGGAAGTAAGATTACTGAGGGTGGATGACATGTGGGTGGTAGCCCTCGAGTCCAT
GTAGCAGTCGCTGCCTCTGACGTACTGGTTCGGCGAAGGTGCGGAGCGGAAAGCTGCGAG
GAGGGCGGGATTCCATGGTGCGGGAGCCGGCGGCTGCATGTGGCCGTAGCCACCGGAAGC
CGACGGTGGTGGCAGCAGAGGGTAACCACCCGTCAGCGATGGTGAGGGTGGCATGGAGTA
GCCGCCGAGCTGCGGCTGAGAAGTCGCTTTCTATGCCTGATGCCCAGCAGGTCGTGAGCC
AAGGATGCCAGGAACAGGGCCGCGTGGAACTGGCATGCTATAAGCATGAACAACACGAGT
CTACAGGTTGGTGCCAAAGGACTAGGGTGGGTAAGGCTGAGGCTGGCGAGGCTCCCCCTG
TACCCCTGGTTCTGCTGCTGCTGCTTGGGGCGACCCCCACGCTTGTTGCGCCGGCCACGG
TCGGCCGACGGCGGCGCGGATGGCGGCTGGTAGTAGGCGGCCGACGCGGCAAGAGGCCAC
TGTTGCGACTATGGTGGAGCCGGCAGCGGGAGCGCGGGTGCACCGCGTGAGGCGTTGGCG
TGGAGGGCGGTTTGCTGCACCTGTGTTTTCACCATCTTCATTCGGCGCTTCTCCAAGCGC
AGGTAGGTGACGGTGGTGGAAAGGCGGTGAGGGCAGCAAGGTCATGTTAGATGCCGCGTT
ACCAAAATCCTCATTGCGGCCGGCGTGAGGGTGCTAAGCATGAGCTCGTCGGAGACCTTG
GCGCCGATGTCGCGTAGTTCGTCGGCGAGCATCTTCATGCGCATGCAGTAGTGGTCAATG
GAAGAGTCGTTTTAATGGCACCCGAAGAATTCTTGCTGCAAAAAACCCATACGTTGGAGC
TTGTTGTCGGTGAAGAGCGTGTTGATCTTGTTCCACAAGGAGCATGCGTCGTCGTCATCG
GACACGACCGTGTAGAATATCTCCTTCGAGATGGTGAGGTAGAACCATCGGATGAGCGTA
GCTTCGATGGCGGACCACTCGGGATCACCCTTCATAAGCACAGCATTGACGGAACCGTCG
ATGTGCTCGGTGAGGAAGTACTCGCGGAAGACGAGGGAGAAGTAAGTCTTCCATGCATAG
TACGTGGAGTTGTTTTGCTCAAGACAGATAGGAACGCGATCAAAGATGTTAAGATCGCAA
ATGCCAACGGCAGATGGGGGATCGGGGCCGGCAAACGGGTTGGAGGTGCCGGAGAGAGAT
GAGGATGGGGAGTCCATGGCAGCGGCGTGGTAGGGTTAGGGTTCTTGGGTGGGTGCGAGA
AGAAGGGAGCAGCAGCGGTGAGGGGTGTGGCGGATGCGATGGGTAGGGAGAGGCGGCGGA
GGCAATGCGGCGGCGGCCAAGATGTGCGGAAACTAGGGCAGGAACGTGGATGCAAAACTG
ATACCATGTAGATTGGAAACAAGAGATTGCATGCGACAATAATTCAAATCATGTGCAGAT
GCACATATATAGTACAAGGAGGTACTTCCTCTACGTGTCTCCCAAGCTATACCCAATATA
GAGGAGACAGGAGGCGTATAAATACAAGGCCCTAGACCATGTTCAACACCTGGCCCAGAG
GCCATGCATCGCCCAGGTTCATCCTAGTTAATCTTCATGTACTAGCCAACACAATCAAAA
TTCTGAACTAATAGAAAGGGCTAGGCAATCCACATATACACTTCAACACCCCCTCTCACT
TGTGACGCGGGAAGTCAATACGTGAATAGACTCAAAGGTATGACTCAACAAGCCTATACA
TCGACACAGAGGGGGGCAACATGCAATTTTTGGATAAATTACGAAAGCCAGGACTTGAAC
TCAAGACCTTTGGCCTTGATACCATGTTAAATTATGCGCTAGCCAACGCAATCAAAAGTT
CAAACTAATAGAAAGGTCTAGGCAATTCACATATAGACTTCAACACTAGTCAAGGACACC
TGACGTGCCCCCAGCGGGCCATGAGCTAGGCCCGAGCCATCCGGGTGTCCGACGTCTTCT
CCCTGGACTTTTCCTCATAGACATGAACGCGTTCTCCCAGGCGCCATTCGGGATTCCAAC
CGGTTGCCTAGATGTGAAACGTACCGCCAGGTATACGGCCTTCTCGAGAGAGATCCAACA
CACCCAGTCTGCGACCATGAACATGTAATCCAAGAAACATCTTTCTCCAACGATCTTCCC
GATTGCCGACGACCACTCAAGCAATAGAACAACCACAAGCAGGAGTAGGGTGTTAGTTCT
CCAGGGAGGGCCTGAACATGGGTAGATCGTTTGTCTCGTGTGGTACCATCTTGATCTGCC
ACTCTCAGAACACACCGGCAAGTAGCTAGCGAGGTGCCTCACTGTTTATACTTGGCCACT
TGGCTAATAGTATATGTGATGCCTAGTGCCCCTAGTCCATTTATTCCTATTATATACATG
ATCATGACTTACTAATAGTTTATTGGGCAAAACAATCACTTATAGTTTAGATCTAGATGA
TACAAACTAGTTTAATCAATTTTGATCCTTACTTGCCAATTATCATGCAGCTATTACATC
AATGCCATCCTGTTTATAGACTCTTATACTTGCATGTAATATTATAATACAGTTTGTTCG
GGATATTCATGACATGATGGCAACCAAACTACAATATCAGTAAGTTTTTCTTATGAATTA
TAGATGCAAGTTCTGTAAAGCAAAACAATGTTGAAGGAGTAACCTATCCCTATTGCATAT
TCACTATGGATTAGTCTTATTTAAACTATATGTTTACTCGCAAACTTCCAATGGATGGTT
CATTTTCCCTTACAAATTCAACAAGGTTCATCACACTCGAGAAAAATGGGAAGATTCTTA
AGTTGTTCCCTCGTGAAGTTTCTACTGATCAAATCGCTGCCATAGAGGTTGTATCTTCAG
TAACTTGTTACTTGTTAGCAGCATAGTCGTTGATTTGCTAACATGTGCTTAATTTATTTT
TCACAGGATGCATATCTTAATATGGCATCTGCCTTATCTGAGGCTGATGGTATCGACTAC
ACCAATCCCGAGGAGGTGGACCATGTTTAAACTCATATGTAAAACATGAACTTTGCTATA
TTCATGTTCCAATAATCTTTTTTTATGTTTATGAAGCTTGAATTATTAGTAGCGGCTCTT
ATTGACCTGGATGCCATGGATGGGAAAAAGAGTGTTTCCTTGATAGTTGAATGTTCAAGT
TCTCCAGATGTTAATACCAGGTGCACAGCAGCATTTTGTGACATTATTTCATTGCATTTT
CCTTTCTTGAATGTAATTTGTAACCAGGTGCTATTTGTAGTTTACATTGATCTTCTCATA
ATTAGTTATAACTTTAGACTAATAAGCTATTGCAGAATCTCATTGAAACACAAATTTGCC
CATGCATCTAAACATACAATTGCATTTTGTTCACATCATTAAAGACTCCCACACATGGTG
CCTTACTTATTCTACACCACAATGCCCGCCGAATCAGTTCTGGAGCTGCGTTTATGGTCA
TCATATGAGCATAACTGATACATTGCAAGCCGTTAGGGTGGCCCGATCTTCATGAATTGG
AGGCGGATTTTAGGTAGAACATGAGGGGAAACGGGAGGAATCATAAGAAAAGCTAAAACA
AATCAACATACAAGACCTTGGAGCTTTCGATCCAGACTCCGCGCCTTGCTCCTTCGCCTT
GGATGCTCATCACTACTTCTTCGCCTTCTTGCTTCTTGATATGGGCTTGGCCTTCCTTCC
TGCTTTATGATTGTTGTCGATGTACCTAAACACACATAGAGTTCTGCTTTGAGATAGTAG
CCATGTATCATCCAAATGCATAAGGAGCTCAAAGAGGAGTAAAGTCACCTCGACTTCAGT
AGCACCTCAACTTCAATAGTTTGTGCACATGCCCTTGTCATCGGTACACTTGGCCTTGGC
AGTGGGTCTACAACGATATCAGTGGGATGCTCCACATCATCTCCCCCTTCCTCGTTGGGA
AATATGTGTCCTCAGACCAAGATCATCATCACCATGAAAAGGAGCAAGGTGGGTGACATT
GAAAGTATTGCTCACCGAGTATTTGTTCATGGGAATATTAATCTTATATGCATTGTGTTG
TTCCTTGGATACCTTGAAGGGGCTGTCTACACGGGGAAGTAGCTTGGACTTCCGTCTTTG
AGGAAGCGATTTTTTGGAAGGTGCACCCAAAACGAGGCCACCGGGGTGGAACACCAGAGG
CTTCTTGTTGAACTTGACCTTGTCGATGTGGCATTGAACTTGACGCTCGATGTTGAGTCT
TGTTTCTTTGTGTATTCTCTTACGAACTCGGCATGTGTGCATGCGTCTATGTTGGTGTGC
TCTTGGAGAGGTAGAAGGAGTACGTCCAATGGTGAAAGAGGGTTGAAGCCATAAACAACC
TCAAATGGAGATTTGCGCGTTGTTGAGTGGCATGCACAATTGTATGCAAACTCGGTGATG
GGCAAGCAATCCTCCCATTCTTGAGGATTCTTTTTGATGAGCACTCGAAGGAGGGTGGAT
AAGCGGTTGTCACTGTTAGTAATAAGCAACTTGTATTCCCATGAGGCCATAGGCCGGTAT
ATGTACATGTACAGGTGATGGACTATATGCAGGAAACCCCTTATATGTTGGGATAAATAC
AAAAGGGTACATGACTTATATTATACCTCTAAC
