morexGenes - Barley RNA-seq Database

Contig contig_61046
Source Contig contig_61046
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_61046 (8075 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_61046

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72099	10	2528 bp	MLOC_72099.3	Available	Available	LOC_Os01g39260.1, FRAME:+3, EVALUE:0.0, 13101.m04007 protein OsFtsH5 FtsH protease, homologue of AtFtsH4, expressed
CDS Structure of MLOC_72099

Contig Sequence (8075 bp)

>contig_61046 8075 assembly3_WGSMorex_rbca.fasta
CTTCCGCTTAGCGATCTTCAAAGATGTGAAGATGCTCTCACCCCTCTCTCGTTGCTGGTT
TCTTCATGGGAAGATCTGAATATGGCGTAGGAAAATTTAAAATTTTGTTACGTTACCCAA
CATTTTGTAGCAAATAAGATACTACACTACAAGCTTACACAAAATCTAATGTTGCAATTG
CAACCAAACAATAATCAGGGATGGTCTAGGTATGGAGTTCATTTACACACACAAATTTCA
ACCACCCCAAACCATCCCGCAGACAAGATCCGAGGTTGAAATACTGTCGTTCTGGCCAAA
TCGAGATTGAGATTCGACGCGCCTATAACTACAACACCATCAGCCCCTGGCCAAATATGG
ATTAAAACGTCGAGAGATTTCAGCATCCCCGCGTGGAACCAACCAGATGGGGAATAAACT
ACGACGGATTTCACCATGCCCAGCCTCGGACTAAAACACAACCAACGGCCGACCGAATGG
GGCTAAACTTTAGGGGATTCAACCACCACCGCCTGACCGAATGGACAAATGATGGGGATA
GAGGAAGTGGATGAACTCACCGACAGAAACGACCGTCGACCAGGGCAGAAGCAACACTCG
ATCCCGCCCCGATTCACCGTGTAAGCAACAGTTTCCCGTGATGCCGACTCGATTCCAATC
ACGCAAGGGATAGATGCAGAGAGAGGAAGGAGTGGAGGATGAAGTGGACCAGAGTTGGCG
AAGAAATCGGACACACTCCACGTGGATTGAATGGGTAAATAAAATCGGAGGAGAGGAGTG
GAGATCATGGCGAAGTAGCGGTGATTGAAGAGAAACACGGCAGGGATGGGGAGGCCCACT
AGCGAGTGAAACAATACCGCTCACGACTAACGCGTTGCCCGTTCGCGCTAGAAGTTATCG
TCCGACGCGCCCGACGCGCAACGGACGTACGATCTACGATGAACTGCGTCCGCACCGTTC
GGGTCTATAACAATGCTCGGAACGTTCGGAAAATACAAAAATCGTTTCATAAAAGTATTT
GAAAGTAGAGTTTGTCTGGAAAAACATCATTCCATCCTGAAAAGAAAAAAGATGCGTCTT
GTTTGGTCGGCTGCTCCCCACCCCCATCAGTCATTGGAGGAGCGAGCTCCCCAACGGCGG
CCACCTGCACCGGCCACCCCCACCCTGGTTCCTCGCCCGGCCACCTGCACGGCGCCAGGG
CCGCGATGCATCGATCCGGCGAGCCGGTCCCTGCTCGCAGCCGGTGGAGAGAGCACATGT
GCACTGCCCGTGACGGCTGGCCTCACAGTCACAGGTGATCTCTGCCTCCAGATCCAGCTC
CGGCTCCGGTTCTTGCCCTTCTCCTCCAGATGCGGCGTGTGTTTCCGAATCAAAGCCCGA
GTTGCCCGTTGAACCAGTTCGGGTTCAGAGTCGGATCCCGCGTGGACGAATCCGGCGTGA
TTCCAACTCTCTCCTCAACCTGTAATCCACATCCGAGTCCGGCACATAGTTCAGGTGCGT
GTGTGCGTAGTAGAGTCGGATTAGAGATACAAACGCACGCGATGAATCGACGCACAATAA
ATACTGCGTGCCTTCTATCTAGTCTCTATAAGAACAGTAGATAGTAGATTATCAACAATA
TATCAGACAAAGAAAAACAGACGGAAGTCGCCGACTTGGAGCAACGCAAACAAATTTCGA
GATCTGAGAAACAAGTCCTGCCCTGTTCTTCTGTCCACCATGGCCGGCCGGATCGCTCTC
TCCAGGGTACTGTATTTCCTTACCTGTCTTCCTATCTGATTCCCCTGTGCTCCATCCGAT
TCCCAAATATAGTAGATTCACTCATTTTGCTCTCGTTCCTAAATATAAGTCTTTTTAGAT
ATTTCACTGCAGGCTACATACGTATGGAGCAAAATGATTGAATCTACACTATAAAGTGTG
TCTACATACATCCGTATGTAGTACATATTGGAAGTTTTTAAAAGACTTATATTTAGGAAC
GGAAGGAGTAGTCTCTAGTGCAATCTCTAAATAAACTTATTGATGCAAAATCAACGGACT
ACAATATCGACCGAGACTTCGTGAAGTCTCAGTCGACTGATTTTTAGCAAACCCGATAAA
CTTATATATTTAGGAACGGAGGGAGTACATGTTATCTGATGCTGAAACTGCAGCTGCAAA
GCACTATCTCTCTGTCCTGTTTTTCAGATCGATGCCACTTATGTTAACGTATGGGTTGCG
ATTACTGTTGCCCATGTTAACTATTTGCTTGTATTTGTCTCACAGGCTGCAAAGCATGTT
GTGGCTGCGGCAGGGGCGGCACGTTCAGCTCCTGCCTTCAGGGCACCTGCTGCGAGTACA
CCTTCTGGAGCAGGTACCTTTATATGGCCGCTTCTCTCTCCACCGCACACATGAACTACT
CCCTCTGTCAGCTAATACAAGAGCGTTCAGATCACTAAAGTAGTCGTTCAGATCACTACG
TTTATATCACTCTTGTATTAGCTGACAGAGGGAGTACATCCTTGATCGGTGATCTGAACG
CTCTTGTATTAGCTGACAGAGGGAGTACATCCTTGATCGGTGTATATACTTTTTGTGGCA
ACTGCAAACTAGTGCTAGCCTTACTTAAAGTTAAACATGGCCGGTAAAAATACTAATCTT
ATTACTCTACATTCTGCCGTGCCTTTTTGGTTGGTTGTTGCCATCAAGGTAGTAAGTTTC
TGCTTGGTTTGGTTCTTAATCAATGCAGGCAGCGTGCTTAGGAATCTACAGCAGAGGTAC
CTATCAAGCTTTGTTTGTCAGAGGGTACAGGGCGTGCAGTCTGGCGCTGCTTCTTTTTCT
AAAAGGATTCATAGGAGTGATCCAGAAGGAGTTATAAACAAGTTCAAAATGCTAAATCGA
GGCAAGCCAAAATTTTCTTTTGTCACGCTTACTAATTAGGTGTAGGCTGTGTTTTTTACC
CATAAATGACATGCAAATTGGCTTGACCAACTCTTGTGTGCACGGATGAACTATGTTCTC
TATGCAGGCGTTTCAACTGCAGCAAGGGCGGAAGGCCATGTTCTTGGTACACATAGTGCA
CCCTATTACATGGTAGAGAAAGGCCTACTTAAAAAGCAGCTTCTGCGTACTTCTGGAGGC
CTTGTAGTTGCTGGCTTTGCGGTCTATGCAATCGGTAAAGTGGAGGAAGCAATGGCTGGC
AAGTTTGAAGGTTTGAAAGCAGTGCCTAGGGATTTGACCACAAAACTCAGTGACGTAAAG
GGGGTTGATGAAGCCAAAGCTGAGCTCGAGGACATAGTTCACTACCTACGAGATCCAAAT
GTGAGTGTGATGTTACCATCAACCTGCATGCAGGTGTTTTAATTAAAACAATTATTTCTA
GATGCCGAGTTGTTGACCTAGTTTTACATTATTTGCAGCATTTCACACGCCTCGGTGGTA
AGCTTCCAAAGGGTGTTTTGCTTGTAGGCCCACCCGGCACAGGGAAGACCATGTTGGCAA
GGGCTGTGGCCGGGGAAGCCGGCGTCCCTTTCTTTGCGTGCAGCGGCAGTGATTTCGAGG
AGCTCTATGTTGGTCTTGGGGCTAAAAGAGTGAGAGAGCTCTTTCGTGCAGCAAAGAAGC
AGTCTCCTTGCATAATATTCATTGATGAAATTGATGCGATTGGTGGGCGCAGACAGGAAA
AAGGTTCATCGTTGGATAAGCAGACGCTGAACCAGCTGCTTGTTGAGATGGATGGCTTCA
AGCAGAATGGCGGGATAATTGTGATTGCAGCGACAAACTTCCCCGAGTCATTAGATAAGG
CCCTTGTCAGGCCTGGGCGTTTTGACCGTCAAGTCCATGTAAATATTCCAGATGTTAAGG
GCCGACGGCAGATCCTCGAGGCATACATGTCAAAGGTGCGCGTACAAAGGCTTATTTTTT
GCAGTCTCTGATGCAAGGCTTTGACCTTAACTCCATGAATTCCTCCATGCAGGTGTCTAC
AGCCGAGGGTGTGGATGCAACGACCATTGCAAGGGGGACGCCTGGGTTTTCAGGTGCAGA
CCTTGCAAGCCTAGTGAATGATGCCACTCTCAAGGCTTCCAAGGATGGGGCAAATGCTGT
TGCAATGGATCACTTTGAGTACGCCAAGGACAAGATCATCATGGGCAGTGAGCGCAAGTC
CATGGTGATGTCTGCTCAATGCAGGAAGATGATCGCATACCACGAGGGTGGGCACGCCCT
TGTTGCTATCCTCACGGATGGTGCTCACCCTGTCCACAAGGCTACCATTATGGCCCGGGC
AAATAATCTCGGCATGGTGGCACAACTGCCAGGGGAAGACAGCGAACTGGAACTCTCGAG
GAAGCAGATGCTGGCGAGGCTGGATGTCTGCATGGGGGGACGGGTGGCCCAGGAGCTTAT
ATTTGGAGAAGCAGGGGTCGGAACAGGTGCCTTGTCTGATCTAGCTCAGGCGACTCAGGT
GGCGACAGAGATGGTCACTAGGTATGGTATGAGCAAGCGGGTCGGCCTTGTTTCCTATGG
CAATGAAGACAATGCTGGTGGTGGCAAGACGATGAACATGAGCGGGCGAACGTCAGAAGT
GGTTGATGAGGAGGTGAAAGCATTGTTGGACAACGCTTACAAGAACGCGAAAAAGGTTAT
CACTAAACATAAGAAGGAGCTCCATGCGCTAGCAAATGCCCTCCTGGAGCATGAAACTCT
CACTGGTGCCGTGATCAAGGAACTTGTTTCGACAGGACGATAAGGAGATGTTCCTAACAG
TAGCCAGTAAAATGAGGGAATTCTGCCTTTCGCCAGATCGCAAAACTAGTATCGACAGAA
GAACAAGCGCATGGTCATAACAATAGCCAGCAGGCTCAGGGAACACCTTCTTCGCCCTAG
TCAGTGGAGAAGTAGTTTCTTTTCCTGCTATTTTTGTTGCATGCACACGAAATGTACAGA
GCTATGCATATTTTCTGGATTTTCATCTGACTTTTGTTCCTCAAATCTGAAGAGAAGGCG
GTGTGTTTTGTTCTTTTGCTTACTGTGTTGTGAACCAGTAAAACCTCCTGTTTTGGGTCT
CAAGCATGGATTACTGTGCCCCAAGATTTCTGTCGTTACTGAATAGGGCACAAATATGTG
TAAATACGATTTCATACATTTTTTTACCCAGCTGCAAAACATAATGAAAATGACCATTAG
GTGCTTCCATAAACGAATCTTGTGTGTCAGTGTTTAACTGTAGCATCTCTAGCATACCCC
TTAAAACACGAAACTGAAAATAGCGAAAAACGCATTTTAAGGGTTGGTGTGAGCTGCGGC
CGAACAGACCACTTAAACTTAAATTGTAAATTGAATTTTTGCTTATATTTTTTCCCACTT
TTCTCCTTCCTCTCACCCATGTCCATAATTAACTAAATTCCAGCACACCTCGCACGAAGC
TACCGTCGCCGTAGCTGGCTAGCTTCGGTCGTTGAATCCATCGAGGAACTAGCTAGCTAA
CTAGCTCTTGGATGGATAGCTCCATCCATCCAGGAGCGAGCTAGCTAGCTAGTTTTCGTC
CCCGTTGCCGAATCCAGCCAGGATGGGCGGCGACGGGCCAGGGACGGACGGGCCACGGCC
AAGGGCGGACGGGACGGCGGCCAGGGACGAACGAGGCGGCGACCGAGAGCAAGCCATGAA
GGTTTCGATGGTAATTGGTCTCCCACCAACGGTCTTTCGCATATACATGTCACCTTCAGA
TTGGCTCTAAAATCCTTATATTCACGGGTTTGTTGGGGATGTTTACCGTGCCCCTTTAAA
AACTTACAGGTCGGAGTCGTTTACGGGGTCTGTTCGGGACACTTTTCAACGCAAAACTGT
AAAATGGCGATTATTTCATGGGTTTGCGAGTTATACAGGTTCTCCTAGAGATGTTTGAAC
AAAAAACAACAATGCAGGATACGAGCTTGTGTCTGATACTGTGTTTTATTTTTGTTTTTC
ATTGATTGCCATTGATTCTAAATGTCAATCAGTAAGATCATAAATCCATATTACTCTCCT
GAACTTTGGTCAGGGTTTAACCATCGATCAAAACGTGTTCAAAACATGTGTTTGATCGAG
GGTTTAACCGGCCCTCTCGACCGACTCGTTTGAGAAGGATTTCGCACAATAACCCTGTTG
ACCTGATCATTCTCACCATGTGGGGAATCCACAACTTTGTGCAACTTGTTTTCAGTGGCG
CCACATACTTCTAATTTCTGCAATGAGGATATATACATTTCAATCAAAATATTTATACCT
GCAAAACCTATGTACAGAGAGAAGGAGAGGAAAGAGAGAGAGGGAGAGGAGAGAGAGAGG
TTCATACCACCGGGTAAACCTCGACAAACCCCGGGCCAGGCTTGCGAATCCCGAAAATCC
CAAGCCCAAGCCCGGCCCGACCCGGCAAAAAATATGAATATTCAGGCCTGAGCCCGACCC
GAATGGACTAAAAGATCAACTTTGGGTCGGGACAGGCTGGGCCTCCGTGTAAAATTACAA
ATTTTCCAACCCGAAATACACACTGGGCCTAGTTTTCAAGCCTGATCATGGCCCGAACAC
AAATCTTGACGCGATCAACCCAAGTTTTTTGGGCCGGGTTCAGGCTTTGTGTTTGGGCTG
GGCTGCCCATGCACGGGTCTACCACCGAACACCTGTTTCTTTGGGTCATATATTTGTTCA
TTTCATTCAAAACATGTAATCAAACTTTCCTTAATCGCAATGCTAGCATACCCCTAACCT
TTATACGCTGTATAAGGTGAGCTAATATTATTGGGCTTGCTGAAGAATTATTTTACAATT
TGCTCACTAGTTTCACTTTTTCATTTAAAAAGAACATCGCGTCTGTCATTTAGAAGTTTT
TTCTTTTCCCCCTCACAAGGAGACTAAGGAAAGTCTTCCTCCCCTCTGCCCGCAGCTGCG
GGGAAGGGAATCTCAATGCCTTGGCTCCGGTTAGTAGATAAGTAGAGTTTTAGTCCTCGC
AAGGGCGGTGCCCGGACGAATGGCGGTGCTTCTTCTCATCATCCTCAAGTCTTCCGAGAG
GTTAGGGTTTCTTGCTTACACAACAACGAGATTTGGTGTCAAGTTTTTCGAATCGATTCA
AGGATTCAACAACGATGACTACGACACCGGTGCTGGTCGTTAGGGTCACGTGCATGAAAA
TTTCAGACTGTCATCGACAAGGTCGACTAGACTCTTGTGTGGCAACGGTGACATCGACGT
ATCAACGACTTGTTCTAACGGTTGTAGTGGTTGTTCGGCGGCCCATGAACCTCGATGCAT
TTTTATTATGTTTGAGGTGATTTGTATTTAAAAAAAAGTCACACTTAAAAAAAACTCCTA
TTTGCTTAAGCACACCACTCCACTAGGAACGATTTTCTACCATACCAGGTGAGAGGACAC
ACCGAAATAGTAATGTCTTTATACACCCTTTCGATTTAACTAAAGCAGTAACTCGATTGA
CCGACCCAAAGGCACTACCAACCAAAGGGAAGCTGTCTCCGATTTGTGGGTCCCAAAAAT
CTATGAATAAGAAATAGTGCTGATATGAGTGCTAAGCCGAACCCCATTCCTCTTTCTAAA
CTTTTGAAACGTCCGCCCAGTAAAAAAAATGGCCTAATCAGATCTTTACATTCTTTCTGA
ACATTAGAACTGACCGATATACATCAAATCCAACTCATACATCAGGGCAATATAAATGTT
CCGCAACTCCTGTCGACGAGTCCGGTCCAAGGTTGCGAAACGGAGCAGCGTCGTAGACAA
TCATACAAAAGTAGAAGACACATAAAGTAGGAAGGAATCAAGCTTTATTAATGATCATCT
TTGTTACAATGATTGCCTCTCCTCTGCTTATATAGGGTATGGGGTCAAGAGATAAGTATC
CACTTAACATGAGATTAGGAAACGATAGGGGTTGTCTAGGGTTTCATATTCGTCCTCTCN
NNTCCTGTATTCGTGTTCTAGGGTCTCATATTCCTCTTCTGAGTCTTCCGCTCGAGTCCT
ATATTCTTCTTCTAGGGTCCTATATCTAAATTTAACAATTCCTGAACCCTTTTTATCTTT
TCTGTATCGGGGATCGTCAAAATAAGCAAAAATAG