Contig Data
morexGenes
Links



Map Locations of contig_6104 (6244 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_6104

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_72095 3 2140 bp MLOC_72095.3 Not available Available None
MLOC_72096 1 4262 bp MLOC_72096.1 Available Available LOC_Os07g32230.1, FRAME:-3, EVALUE:0.0, 13107.m03259 protein domain of unknown function domain containing protein, expressed





CDS Structure of MLOC_72095






CDS Structure of MLOC_72096






Contig Sequence (6244 bp)

>contig_6104 6244 assembly3_WGSMorex_rbca.fasta
TACTCTGCTAGGTTCCTAGCCACAGTGGTAGGGTAGAGTAATAATGGAAGAGGGGCAAGA
GGGGGAGTCTAGAGGAGACTGGGTAGGCTAGGACAAGAGGAGGAGTGAGATGAGACTTGT
GACCATGGTTAAAAGCTGTAGTAGCGCTGATGAAAAGGTCACGGGACAAGGAGCCGTACT
AGGAATCTACAGGAGTTGCACATGACCCCACGTACACTACACACACACCAGTCAGTGGCC
GTGCCCACTTTGCCACTGTGTGCGGTCCGCTGCCCTTTCAGGTACCACCTATACCTATAC
AGTAGACAGACTGGACCCGAACCAATCACTTCCATGTTCCACTCTCTTTTCTCCTTTTTT
CTGTCTTCGCATCTCCCTAGCGGTTAGCAGTCTCACAAATACTATGCGACCCATCCAAAC
CGCACCGCAACATACTATACTCTCTGGAAAATCCGAAAATGCTCAAGAACCAGGGAGCTC
GTTTTCAAAATACAATTTTCTACAGCATGAAAAATATTGAAACTGTTAGTGAGCATTCAT
ACACATGTATATCACCTATGTGCAGATTTTCTTAACAATATACTTCCACACGTCACGTAC
AAAACAAAAAACAAATACACATTTCTAAAATGGGCCGATTTCTGTTAGTTGGGCCGGAAT
ACAGCCTACAAATCACAACATTTTCAGACCATCACACGATTCGTACTGTACACATATAAG
TTTCCATGGAAAAAAGAAAAAAACCTTATGTAGTGTTGTGTTATGTTCAGCAAACAACAA
CATAGACACACCATGATTTCAGCAGGAAACCACATTTATTCAGGACTCCATCTTGGAGCG
GGAAAACCCCAAAATTCTCCTTATTGGTGCATTACATAGTTTCACAGCGCAAATAACAGT
GCCATTCCTGCATGTTCCTGAATCCTGGACATCTCGGTATTCTATTGTTCAACGTATAAC
GACTCACTCTACACATGCCCAAAAGGAAATGCATGTCCTATAGCATGTTGAATCCGTGTT
CCCAGCACAAACACACAAAACCATACAAGAACAAGCTGCTTATGTTGCTTGGCGGATCAT
TCATTCTTCTTCTCGAATTTTGCCTTGTCAGCGCCACTGTACGGAGCAACGTGATATGCG
TATTGCTGGAGAACTGAGAAGATGACCATTTCCAGGATAATCAAGACATTCTGGATTGCC
TCCTGGATGTGCTCCACGTCCAGCCAGAAATGGTGAGATTGAATAAACCCTACAGCAGCC
AAAACATCCAAGGCACAGCCCTGCAAAAACACAATACCGTTCAAGATTCAGGAGTTTGAC
CATATTTCATGTGACAAAAAGTACTCCACTGTGTTACAATTTGGAAGTGTTGTATTTAGC
TATTTAATTTCCCACAGTGAACAATTGCATGTTAGAATGTCGCCGGAAGCATCCATAGAC
AACACGGTTCACCCGCAAGACAAGTCCACTGGAAATCTCTACTGCAACCAAGTTGTACGT
TAAAAGGTTAAGCAGCGAACTGTTTTGTGCTCATAAATATTTATGGCAAGGCATGGGAAA
TTAAATTGCTGATGAAACTCCTAGATTGATAATCATCAGCTATAATAGCAAAATAAGGTG
ATCAAATATCATGCAGAACAAATCCAGAGAGTAGGTGCGAGAAGAAGCTTCATGCAAAAT
CATCACAAACAACATGGCAGGAACAGAAGGTCTAAACTATCAACATTACTAAACCAGTAC
CGCTTCCTCAACCAAATGTTCAGACGCAATCATCAAGACAAACTGGTGTACATTACATCG
GTAGCATTCAGATACACAGAAATCTAACCCCATAGATATTTATAAGAAAATTCCAACTCT
TTCCAGCCAGGAGAGGATGTGATTTTACCTGCCAGAAAGAGAAGAAGACAATCCCTTTGA
TGCACAAGAACTTTGCAAGAGGCTTGTGAGGTGCCAGCTCCTTAGCAAACAAGTGATAGA
ATATGACCAAGGCATATAATGCCATGGAGACTGAAAAGTTCAATATAATTGTGAACGTCC
AGCTGACCCAGCTGGGGTACAACCCAAGAAGCTGAAGTACAATAATCAGAATGGAGCATA
CAGGCCTAACAACAACAAATTGCCAGGTCCAGTACTTCAGAAGCTTAAGTGTCTTGTGCT
CCAACCGAACATTACGGGGCTGCAAAAGCACAAACCCAGAAACATCATGGTTACTTTCAG
TACACACAAAGTAAAACTACTGAACAAGGTGTGAACACTCAGCTAGCAGTATTGCTAATA
GCTTCCAGATTACATATGCAGGTTATAGGTGTAAATATGCAATTGTAGACAAATGATGCA
AAGGAAGGTTCAGGAGACGGCAATATTCAAACGCATATAGGAAAACTTAGTGAACAACAC
ATGAATAAATGGAATTTAAAATCATAACTTAAGCATGCATGACTACTGATAGGCACGTGT
TTCAGTTAAACCAGATATTACTAACTGAATTACTATTTTGTGGACGAAATATATAAGCCT
TTCTGTTAACACCGTGAATCCTTTTAATATTACTGAGCATCCTTCAAATATGGTAAGGCT
CAGTATGGGTATGCACCTAGGACCCCTTATTAATTTGTCATTAATAGTGCAGGTTGCATT
ACCAAAATTCAAGAGCATATTACAGACACTCATCAAATATTCCATAAGTGTATAGAAGAG
TGTAAGAAAGATACCAGGAAAAGAGAAACAGGGAAAGAATGATGAAGCACCCTCCCTTTG
ATTTCATCAGGTACGATGTTTTTACTGATAGATATATTTAAGTAGCTGTACATCAATGCC
AGAAACTTAGCAATAACCTGCAGAATTGAAATAAAAGATAGAAGGAAAAGTGAGTGAAAT
CACAAACTTCAGGTGAAAAAATGCCATCGATCCATGAGGATTTACCAGTGCTTCATAACA
TTCTTTAACAGACTCCAAGCATGTAAAAAACGTTTTGCTTCCCTTAATATCCAGAAGACC
AGCAAAGGAAGTCATAGCATACAATGGAGGCATCAGCACTATAATGAGTATAGCCTTCTG
CTCTTTGGGATTTTTCCAATAAAAAAGATGCTGTGATACCAGCTGTATTGTGAAATGCAT
AGACAACATTACACAACAAGCTGCTCCAAGGAGGGTAAGAGTTGGAGGATCCATTTTCGT
AAGATCCATCCCAGGGAACATCGACATAGTGCCTGAAGTTATAGATACTCATATTAATTC
ATCAGGGTAATGATTTTTCAAAAATAAATAGCATGAGAACAACAAAACACCAAGATCGTT
ACATTTGTATGATCATTTTCTGAACACAAGTTGGTGCTTGGTTCATACTCTAAACTGCTT
CGCATAACAATGTTTCTGGGATTAAATTCGGTTAGTGAGGCATTTTTTTAACTTCCTTTT
CATAAGCATGGAAGGACACATAAAGCAGGAGATGACAATGAACACATAACTCAAAATGTA
ATGAGCCGATATTCAAACTATCTTATGCCATACAAACAAATGCATTGCAAGATATGTCAG
AAATTTTCTACACAAATGAAAGCAGGTCAAGATATTCCTCAAAGAACTTCCACCATGTGC
AGTTATTACATCACTAACCCAGTGATTACTGTCAGATGATTGGTATGAAACAACAGCATG
AAAGGCACCAGGAGGGAAATGATATACCTTGCAGTTGTGATATTTTTATTGCTGAAAGAT
CTCTAGAAGATGAGCAAATAAAGAATGACCACTTTATGTTAGTATTATTATTATGATTAA
TATTTTGATAATGGATGCTTTTATTTATCTCATCGTCGTGTCAAGCCAATACAACCACAC
AAGACTTTAACAGATATTTTATGGAAGCACTAACACCCAATGCCCCATGGTAGTTCTTAC
TCCCAATTCAAAGTTTTTTCGTGGAAGTTTCAACACTTTTGGATTATTAGGAGCACCCTT
GCAGTAAGAAACCATCTGCTTTGGGACATTTTCCATTAAGTAATTTGTACGAGTAATATT
ACAAACCATAAAGGGGCTAATGTCTACATGCTTAAATAAAAATAGAATGTTATGTATGAA
GCTGAACCGGACAAGGATAGTGCTGCATACTATTTCACTTAATCATATCTGCTCCAGAAG
CTGTCGGCAAAACGGACAGTAGGGAATATCCACAGCATTTATACCCCAACCCGCGACAGA
TAATTTTAAGGGCAAAGCTACTGTGTTGCCTAAAGTGGATCTAGAAACTGGGTATCACCA
GAAATGAGAATAACTGCATAAGCATAAGATTTGCACAAGAAGCAATCTAGAGCACATTAA
GTACACTACAGCGTAGATTGTTCCATTCAGACTGACTAAGCCCAGCTTCAAATCGAGAAT
CAGCTATGTCTGGCACACAATCAAGTAGTAGCGCTGGCACACAAGGAAGAATCATCTACT
CCATCCAACTAGTTTCAGGTTTGAGTCCTGGGCAAACCAAGGGATGTATGCAGGGCAAAC
CATAACATAACACAGCTAAATAGGAAGCTACTCAACTGAATAAAGTTTTTATAATACTAC
AACGCCCATAATCACAAACATAGGAACAAAGAGATCCATTATAATTTATAAATGGAGTGT
TTTTCTTTCAAGTCTGACAAAAATTATGCACTGGAAATATGGCTGTTGGAAACATCGAAT
GAACAAGCAGAGAAGAACTTGCTAAAAATGTAAACAATAAAAAATGGTAACAGAACTACG
CCAATCCTTTCCCTGGCCCGCCTGTGGTCAAGGTGGACGCTGCCAAAAAAAAAGGTAAGT
GTGCCTATCCACACAAACAGAACCCTGTGAGAGCATCTACAACCGGAAGTACCAAATTCC
GGTTCCCAAACGCTGGCGGACGCGCCCGGGCGCGTCCGTGGGCAATGACCAGGCAGCACA
CAAAAAATGCATTCCACAACCAGATACCTCATTTTCAAATCATCAAATCCATATTATTAC
GTGCAACATGAAACTTAATCTAAGCGGAGATCGTCCGGCTCCGTCGTGCTCATGTCCATC
GGCCGGCTGAGCCCCTCGATGTGTTGCACCGGTCGTCGGCGAGGTAGAGTAGGACATGGG
GCGCGTACTGGCTCACATGACTCAAGTCACGGCTGTCCCCCATACCCTACTCTTCCTCGT
CGGAGCCCTTTGCATGCACATCGCCGGTGGACATGAGATCGGTGATGGATCCGTCCTTGG
AGGAGCCGGCTACGTCCACCCATACGCGGCCCCGAAGAGTGCGACTCCGCCTCGCCTAAG
TCCGATGCGAGGGCTTCCGTGGCCTCCCGCGCCCACTGCCTCTTACGGCGGGCACGCCGC
GCCATGCTTGCGTCTGACGACGCCCATGAGATCACATCGGCCTCGGCGCGCCAACATAGC
GGTTGCGCATCCGTCAACATGTTGGGACGCCACACGGACCGCACCGCTTCTGGTGAGGCA
ACGGAGGCACTGCTCGCGTCGGATCCATGCACATTTGGGCGAACGCAATGGATTCTCAGC
GAAAAGAGTTTGCCCCCTGCCGTCGGGCTACCTCCTCCCGGGAGCGGCACGACGCGAGGC
AGACGACTATCTCCTCCTCGAGGCTGCGTGGGACGGGCTCTGGATCAACAGATCTAGAAG
TGTACCACTCGGATCCGCTGCCAGCCATGCCGGAGATGGTGGAAGATTGTCGGGAGCTTG
TGAGCGGAGGGGAGAGGACTGGGGAAGTGGAGTGAAGCGGAATGCGGCTAGGGTTTCGTC
CGAAGTGTGGATAGGGTCCAATATATGTGGGGTTGGGTGGGTCAAAGTGAGACGGTTCCG
ACATGGCGGGCGCGTCTTGGCGTCCCCATATCTGCCCTAGATTTGGGTTGGAAATGGACA
GTGTCGGCCAGTCCAGGCATTTGGGCCGGATATGGGGCGTCTCGTTGGGTGGCGTTTTAA
CATCCAGACACGGACCAGGCAGCCTGCACAGGCGTTTGGGACAGGTATGAACGGGTATGT
AGATGCTCTAACATTGTCAACCATGAAATTGTGATGTGGGACAACAGGATGGATGGAATC
TTGCATGTCAACATGTGTATCAGAACAAATCCTCAAGTACTAGCCGAACAGGCTATTCCT
AGTTTCCCACATCAAACTTGCTTCCAGTCGATTTTCACGAGGCACTTGCATCATTATAAA
TGCAGTAGAGCAGCTGACAAATGTGAGGAATGAGCAACTGCATTCGGGGGGGGGGGGGGG
GGGG