morexGenes - Barley RNA-seq Database

Contig contig_61025
Source Contig contig_61025
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_61025 (5924 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_61025

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72084	4	2226 bp	MLOC_72084.2	Available	Available	LOC_Os02g11740.1, FRAME:+3, EVALUE:0.0, 13102.m01266 protein plastidic ATP/ADP-transporter, putative, expressed
CDS Structure of MLOC_72084

Contig Sequence (5924 bp)

>contig_61025 5924 assembly3_WGSMorex_rbca.fasta
TGGAGGAGCGGGTGCGGCGGCGGTGGCAGGCCGTTCCATCTATTGTTTCATCCAAACATA
GGAACGCAACCTGGTGGAATGGAATGTCATGGAATCATTCCATTACGTTCCACCTCGTTC
TTCAACCAAACACATCCTAAGGGCACTCCTTTTTTGAACTTTGCAGGAAGTTGTGCTATA
TTTTGGGCATGTATGAAACACATGAATTTTGGGCATGTATGAAACACATGAATTTTGGGC
ATATATTAATGCAAGAATCAGGCAAGGCTCGTGACTACATCTTGTGTGATCAGTGTTCAG
AACGATTAGGATTTATTTAAATAACAAGCAGTAGCAAAACAAGTAGCAGTAACTTTTGAA
CATGGACTAATAGATATGTGAAAGCAGATTTTCCGCAAAATTGTAATATAAAAAAATCAA
GAAAAAGAGTTCCATATCTACGGAGCGACAAAACAAACCAGCTACAGGTACTCCCAATAA
ACAGCTATAGATACTCGCATGAAGTCAAAAATATGCTACAACAACAGAAGAACAGGCCAT
CTTATTTTCCTTGTCAATCACTCTGCTGCCTTTCCCAGCAGCTCCCCGTGGCAGGCCCAA
CCAAGCAACGTTTGCTTCCATCAAAAACTCGTACTAACTAAATTTCTGGGGATGTAAACT
TATTGAGACTTCTTGCTAGATTTTTCAGTGGTGGCACTTTCGGGTTCTTGCGACTGTTTG
ATGACCGTACCATTTGTGGAGCTCTGGCTCGCAACATTTTCTTGAAGGGATCCGTTTCCT
GTCCCAACGACTTGGGCTGTCGTTTCTACCGCCTCTGCTTTCAGCTTCTGTTCCCTCTCC
AGATCTTGCTTTGCCAGGGGAGAGAACTGCGAGTCAAGGGACCTTACGGCGCCCAACCAC
GCGATGACAATCACCAGCAATATTCCTCCAAGGTACGGCGTTGAGTTGGCAAGAGATCCG
AATGACAAGATCATGAACTGCTGGATCAAGGCACCTCCAGATTTTCCCAGTGGGTTGCAT
ACAACATCTATTGCTGCCTTACCTTTGACCTATAATCACGACAAGAGAAGAAGTTACTCA
GTAAGTATCGAGAATTCGACAATAGTCAAGTATTTGTTAAAGCAAGAATCAAGGCCTGTG
GACAATGCATACTACGACTCTTATATCCATCATAAAATTTCTGACAGTTAAGTAGATATA
ATTGTTTTTTCAGGAAAGCGCAAGAAGCCCGTCTTTTTATTAGAAGAGGGAACAAAAACA
AGTACAGATAATTGTCAGATAACATTGAGCAAGGATTCTATTGTGCGAGACAATTACGAT
CGGAAGTAACAATAATGAAGCACAACAACTTAGACATACTTTGATCGTACCAACATAACC
GAGTTCTAGTTACAATCAATGAACTAATCAACCATTACTTGTTTTAACCAGACCTAGTCA
AACTATACAGTTTTGCATGTATATTTGTATCATATGATGATTTATTCTCATTTTGTAATA
TAGCAAGTATATCAAATGAAGTTTATGTTTTATTCACATTCTTCCTTGTCTGTTCTCAAT
ATCTACTGTATCACGATCGATGTTATGTTTTGCTTTGTTTTGTTTCAGTTACTAGTAACT
TCAATATCAGATTTTCGAAATCCAAAACCATATGAAACATGACTAGTTAGTTTTGCCCTG
TGTTCCCACGCTACTATATTACTCCCTCCGTTCCTAAATNNAAGTCTTTTTTAGAGATTC
CACTAGGAGACTACATACGAAGAAAAATGAGTGAATCTGCAACCTAAAATATGTCTATAT
ACATCTGTATGTAGTCTTCTAGTGGAGCCTTTGAAAAGACTTCTATTTAGAAACGGAGGG
AGTACATGAGTAACTTGAGAGATAATTTGTACATTAGGAACAAGTAACTTTCAGCACTAA
CCTTCATGTCCTCGTCCAAAGGAATGTACGCCATTTCTTTGCAAGGATCGAACAAACTGT
ACTTTGCACTCTTACTGAAAATGTTCTGTAGTGCCCCAACGAAGACCGCAGCAAGCAAAG
GCGTCATCCCAAACGTGGCTAGAAGAGGAGTGAGTGGCTCACCAAACAAAAGCAGTGAGA
AGAATCCAACTCCAGTGACAAGCAACACTGCAGGGGTGATCGTAGCTGCAACTCCCCACC
CGAATTTTCTAAGAATTACTCTCCCTAACAACATCATTGTAAACGTAGCTATGCCAGTAG
CCGTTGAGAAATCACCCATGAATGAAGAATACTCGTTAGGACTTGGGAACTGCAACAGAA
CAACATAAAAGTTAACTACTATGCCGTCTATATACTATGAGCAAATTGTTTGTCATGATT
TGTGGATGAACTTACCTGTGCCTTCAATTTTGATTTCCATGTCACCTCTACAAGGTTGAT
GCTTATACCATAAGCAACGACCAATGTGGCAAGATCCCTCACATATCGAGATGATACCAG
CACCTTCAAACTCTCCCCCATACTAAGCTTTGGCTTATTCTGCAAGTAAGATTCATGCAC
AGCACCGTCAACAGAAACTCCATATATATACAGGTAGTAAAATCAGAGAAACCATAACAA
AGCTAACCTTCTTCTTGCGTTCGACCGGCAGAGATGTTTTATCAATAACATACTTGTTCA
CTCCCCAATAGATACCGGCAATGACGAAACCCAGCACAACCACTATGCTCATCATGCCCT
TCAATGAAATAGCCCATCCGTCCACCCCTGGACCCAAATTCTGCCTCATGTTTGAGAAGT
ATTTCACCGTGCGACCAGAGAAGATGAGAGCCACATTGGCCCCAAGCCCGAACAGTGGGT
AAAACTCTTTAGCCTCTTCAACCGTGGTAATCTATATAACAACAGTACGGGCACATGAGA
AACTGTATAACTAGTACAGAATCATTTACTGCGACTGATTCTGAAACAGTAATTTATAAA
TTCCTACGCACACGTACTTATTAGTGGTTCACAATATTTTGGAACAACGGAGGACCCAGC
AATTCTGCACAAACGAGAAGTGAGTGTACGGTGTACCTGATTGGCAAATCCCCAAAACAG
GACGGAGATGACAACGCTGCCCCAGAGCTCCGCCATAACGTAGAAGAGGCAGAAACTCCA
GACGCGTAGGATGGCGACGGGCCCCAGGAAGCTGGGGCCGAGCGACGCGAGGAGGCGGTC
GGCGAGCGCCGTGGGGTGGATGGCGTCGCGCATAGGGTAGAGCACGTATCCGAAGACGCC
GAAGAAGGCGATGAAGGGGAAGATGACGGTGTAGAAGAGCGCCTCCTTGGAGAGCACGTC
GGCGAGCTTGGAGTAGAGAAGCATGAAGCCGATGGCCATGGGGAGGTTGACCCACGTCTT
GAGGAAAGGGATGATCTCGGCGCTGCTCCCCTTGGCGGTGACGACGAGCACGTCCTTGGT
GTCCCTCAGGATGGTGTAGTTGAAGAGGATACAGAAGAACATGAGACCCAGGGGCACGAT
CTTCTTGAGCGTGAGCGCGTCCACGCCCAGGAACTTGCGGGAATTGTCCGGCGCATCGCC
GGGCACCGGCGCGGGGGAAGCGACGGAGGCGGCGCGGGGAGGCCTGAGGCACGGGCGGAG
CGGGAGCGCGGCGGGCTGGCGGAGAGGGGTCGGGATGGTGGGGAGGCGGAGAGGCGTGGC
CGCGAGGCGGCGGTGGCGGAGGAGGTGGACATGGGCCGCGGAGGGGAGGGCCGGGAGGCG
AAGGCGGTGGCTTGCGACGAGGCCGGACTCCATGGGGGCTAAAATTCTCGGGATGGAGGA
TGGAGGAGATAAGGGTGAGGGGCTCGGGCAAAGCAGGGGTTTGCGCAGGGGAGGGTTCTT
TCTTATACCACTCCTCTCATGCCCCGCTGCCACTACTCGCGAGAGATTAGAGAAGATGCC
AGTGGCTTAGTGCGAAATTGGTATTATCCGACCTACCTTAATTGTGGTTAGGGCATCTCT
ACCAGATGTCTTAGGGCAACTGGAGCGCGTCGACACATTTTTATCGCCCGCACCTTCATG
AGTCGAAACAGCTCGAAAAAGAAGCCAACATTCCGACCCAAATAGAACGTACTATCTGAT
TTTTTTCGCCTGCAATCCATTTCTAATTTAAATTTAAGTTGGATTTAAAACAATATAGAT
ACGATGCGGATGCGCGCGACACCTCTCCTGTTCTCTGCCTGCCCCTCAGTCGGTGGCACA
TCCACCCATCCCCCCTCTCTCAAAACCATCCCGCCCTCTCGCCATGGCCGACACATCAAA
CCCCTCTGTCGTTGTGTCCGTCAAGCCCTGCCCCTGCGCAAGGAGCTCACGCCGAAGCAA
CAAGCCATATAGTCGGAGAAAAGGGTTGGTCGAAGGAAGGTCGAGGCCGACAAAAGAGAA
GACGCCACCGCCGCTCGATAGGAGGCCATCATTAAGGAGAGTGAGGCCCTCGTCGCCAAG
GCCACGAGTGGGACCTTCAGATGCCAGGGTTCCCTCACGGCGAGCATGGCTCTTCGGCTG
CCCGCCCGCCATGGCCGGAGTCGTCACGCACCTCCACCACGCCGCAACCGCATGGCTTCC
CTCCCCAGCACGAGTCGGGTGCATCCCGCCTCTCCACCTCACTCAGGGACTGCTCGTGTG
TAACAGAGTGTGATCGTGTCGACCACCGCCGTGAACGTGGCCATCGACCTCAACGCCACA
CCTGTGCCCGATGGGTCGTCCATTGGGACGAAAAGGAAGCGGTCGAGGGAGATCCCTATG
GTCAACCTGGTCGACGCTTGCAACCTGTTTGACAATACGTTGGCCTAGATGGTGACATAT
GATGACCCGACCAGTGATTTCATCATGGAGAACACCATTTTCGGGGGTGGCCTAGACTTC
GATGCCGGCGAAACCCAAAGGCAGGACGGCCGTGACCACTTCACGCAAGGCCAGGAGGGC
ATGGTTGGCACCTTCATGGAAGGCCAAGAAGACACCGACGATTAATGGCAAGATGAATAC
GACGAAGAGAAAGAAGATGACGTGGACATCGAGGAGGAGCCTTTGTTTTCCGATGAGATC
ACTCAACAAGCCAATGCACAAAAGAGGAGCTGGCAAAGTATCCGGACCAAGGCATACATA
AAAGATGAGGACAAATTAATTTGCAAAGGTTGAAAGGAAATTCGAAGATCCCAAGGTCGA
CGCAGAGAAATAATGATCAACATTCTGGGCGAGAGTTCATACATACTTCCGTGAATGTAG
GAAGTTCCCATCCTATAAGTTTGAGAGCAATCATGGGTGGGTCTCTATCTCAAATAGGTG
CGGGTTCATCCAACAAGAGTGTAACAAGTTTATGCCACCCTCGAGATAGTCAAAGGTCGT
CCCCTGAGTGGCCTATGCATCAATGACATGGTATATGTTTCCTTCTCCTTTATTTTTGTA
TCCATTGATTGCTGCTTGTATTCATGTCCATTGAATATGAACGTACATTGTTGCCTTCAT
TTTCATTAGTAGACATGCCAAGCTTTGGAAGCATTCAAGGCCCAACATGGGGAGAAGCCA
TTCACTCTCACCCATTGTTGGACGATCATTTCTAGTTGCCCTAAGTTCAAGGACCAATAT
GCCACCCTAAAAAAGAATGGAGGGTCGACAATTGTCCTTGAGCATGGTGAAGGAGAGAAG
CAGACGAGGGGGAAGACCAACTCCAAGTTAGATGAGAAGCGTGATGCGGCGACATTCACA
TTATAAGAAACTTTGCAAGGGTTCATGACCCAAAGTGAAGCAAGGGAGGAGAGGAAGCAC
CAAGAGAAAGAGGAGCAAATGAAGGCTTGCACCGATGTAAACTTGATTTTTTAATTGTAA
ATAAACACAAACATGTAGTAGCTGTTCAAAATATGCCCTAGAGGCAATGATNNNNNNNNN
NNNNNNNTATTTCCTGTTTCAAGATAATCGTTCGTATAACTTCG