morexGenes - Barley RNA-seq Database

Contig contig_60946
Source Contig contig_60946
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_60946 (7687 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_60946

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72044	1	881 bp	None	Available	Available	None
MLOC_72045	2	1024 bp	MLOC_72045.2	Available	Available	LOC_Os01g54960.1, FRAME:-3, EVALUE:6e-123, 13101.m05777 protein expressed protein
CDS Structure of MLOC_72044

CDS Structure of MLOC_72045

Contig Sequence (7687 bp)

>contig_60946 7687 assembly3_WGSMorex_rbca.fasta
ACCAATCTTTGGATAAAACCGTGAATGCCACCTTGGTCATCATATAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTTTGAATATAACTCAAGGCAGCC
ATTAGTCCATACGGATTGTCATCAATTACCAANNNNNNNNNTGGAGAAATATGCTCTAAC
AAGTGTTTTACCTTTGTATGCTTCAAAGCTTGTCAGAAGGGGTTCTTGGAGGTGTCTAGG
CCATACTTGGCTGTAGATGCAACTGCATTGCATTGTAGGTTCAGGATCCAACTTGTAGCA
GGATGTGCCCTGGATGCTCATAGCTAGTTATTACCTGTTGCATGTGGTGTTCTTGAAGGG
GAGTCAACTGAGAGTTGGATTTTGTTTCTCAATAACCTGAAGGAAGCAATATGACATCCT
CAAGGTTTAGTAATACATACTGATGCATGCAAAAGACTAGAGAGTGATGTTGATGATGTT
TACCCTAGAGTGGAGTACAGAGAGTGCATGAGACATTTGGCAGAAAATTTCAGTAAGATA
TTCAAAGGAAAGTTTTATGATGACAATTTGTTGCCTTGCTCACTAACATACAACACCAAG
AATCACAACTATCATCTGAACCAGCTGAAAAGTAGGCCCAAAGTAAATGATTATCTTGAG
GAGCACCACAAAAAAAATCTAGGCTAGAGCTGCTTTCACTGAGTTGAGCAAAGTAGACTA
TGTTAACAACAATCTTGTTGAATCTTTCAACTCTAGAATCAAGAAATATGAAGGCCTAGA
CCTAGTGGACATGCTGGACAAGATCAGGTAGTATACTATGGAGAAGTTTGACTTAAGAGA
AAGAATTTGTATTGACCATTTTATTGGGAACAATATTGTACCAGCAGTAACGAAGGCCTT
AATAGAAAAAAAACTAAAGGTTTGGAAATGAGCATTGTTAGGAGAAGACCCACAGAGGTT
GAGGTAGCTTCAACTCACACAGAGAAGAGAGAATGGATGTACCGTGTGGACGTGGAAAAA
TGGACTTGCAGTTGCAGACAATGCGAGGTCACTGGAAAGCCATGCATTCATGCCCTTTTC
TTCATCACTTCTCTAAGAGGTGATGCTAATGAAATTGACAAATATGTCCATAAGTACTAC
TCTGTTGAGATGTTCAAAGATACTTATGCTAAAACTTACTAGCTTTGTAAGGCAAGTAGC
AGTGGGACATAGTAGGCCATGGATTCAAATTGTGTGCTCCTGTTGAGAAGCAAGCACCGG
GAAGGCCAAGAAAGCAAAGGAATAGAGCTATCAGTGAAGGAACATGCCTTGGGCCTAGGA
AGAAGAAATGCAAGAGGTGTGGAAGACACCAAGCCAAGGGCTGCACACGATCTGTTGATC
CAGCCTTTCGAGAAGAAGAACATGGGGGTGCACAAAATGCAGATGATCATCCTACAACTA
ATGAGCCACCAGTAGCAGAAGTGCAAGATGAGAATGGTGATGAGCCAATACCTGATGTTG
TCCAGCAGCAAATGCCACCACCAAAGGAACCATCACATGGTGCTTCTACACAAGCAAGTG
TTGAATTCCAAAATCCATTTCTCTTCATGCATACCTCACATTTTGTGACATGTTTGCAAA
CGTTTTAGCCCTAGGAAAAACTAGAAAAAAAAAGCAGCAGAAAGAGGAGCTTCTCCAAAG
TGTGTGGAAGAGAAGACAGGTGCGGATTTGCAACCAACAAGTACATTCTGCTCAGTTGTT
GCAAGCAGTGTTGATAGCAAGGTTGTTTCTCCTACAAATAAATCACAAGCACCATTTGAA
TCTCCACACACTGGCCCCAACCCAGCTAAGAACACTAGAAGAAAGCAAGGGAAGCTCCAA
ACCCAGCCAAGAACATCAGGAGCAAATAACTGAAGTTCTAGATGTTTAAATAGTGGGCCC
TATTTGATTTGTGTTGAGTTTGTTGTTGAACTTCTGAGTGCTTTATGCACTTGGTGCTGT
AGTATGTTCTGTTCTACACTTGATGTTGCTATGAACTTGGTGTTGTAGTATGCTCTATTA
TGCACTTGATGTTGCTACGAACTTTAATATTTGATCTTATTCAGTGTGTTGTCACATAAG
ATTTATTTGCCGTCGATACAGTCAAGTGCAAATAATAACAGCATCACATAAGATTTGTCA
TCGACACAGTCAAGTGCACATACCAGTACATCTACCATACCAATACAACTAATATAATAT
TTCCCACAAACAATAGTGCCCATAAGAGCATCATCTCATCTCTCTCTAAGTTTCTTCTTC
AAAGCCATGTTCTTACTTGCCAGCTCCATGTTTTCCTTCTTCTAATGGTGCCATTTGATC
CAGCTATCTTCAACCTATGCATGCAAATCTTCAAAAGCAAGGGCTAGACGCAGTGGAGGA
GCTGGGTCAACCCAAACCACCCATTGACACTCTTCGGGTAACTAAACGCAAATCAAACAA
ACGATATTAGAAAGTAGACATAATCAAAAACTATATATGTCTGAAATTCAGAAAAACTTA
CATCTAATGGACAACCTAAAAAACAACGGCTAGTGCTAGCTTGACACTCTTCGGGTAACT
AAACGCAAATCAAACAAACGATATTAGAAAGTAGACATAATCAAAAACTATATATGTCTG
AAATTCAGAAAAACTTACATCTAATGGACAACCTAAAAAACAACGGCTAGTGCTAGCACC
TCCCCATGATACACGGCGGCCAGGAACAAGGCCATGACTTGGACAGCGATGCTTTGACAA
GAACTCCAATCCGTAATAGGAATCATCAGGAAGATAAAACTCCGAGGAATGATGCACAAT
CCCGACCCCATCGGCCTAAAACAAAAGGTCAAAAAATTCCCCCAAATGCCACAAACCCTA
GAAAACTAGATTGAACGGGTGGGTGTGGAGGAGCATGAAATCCATCTCATTACTTACCTC
TCCGGACGTTGGTGAGTCACACCGGGCATTTGGGTACCCTAACCCGCTATCCGAACCTGA
ACCGAACCGAATTACACGAATTGTCAGGTAATAGGAGTATCGGGTTAGGATTCGTTCTCA
TTTCTTCGCTATTCGGTTTTCGGGTTAAGGTTCGAGTTCTAGTACGAAAAACCTAAAACC
TCATACTACCCAAATTATTCATGTTGTTATTACACTTACATGTTATCCATACTAACTAAA
ATACCCATACTATCCAAAAACACCCACACTATCAGGATTATTCATACCAAAAGTTGATGT
GTGCTCCAAATATTTTGGGATTTTTGGGTACCAGAATAACCTGAACCCAATTTTTGGGTA
ATTTGAGTTCGGGTATATTTTTGGCAAAAAAAATCGGTTCCATTTTTGAGTACCCGAATT
ACCCATAATCCTAACTATCCGAACCGAAATAACCAAAATATCCGAACGCCCAGGCTGACC
GGTGAGAAGTTGGACGAGCTCGAGCTCGCCATGCGCACCCTCTCCTTTCTCTCCCGCTTC
CCGCTTCACCCTCCAATTTTTCTGCGCCTTCCAACCTCTGTTTTTCATGTGAGCTAGCTG
AGGACGAAGGGGTACTAAGGGTTAGCAGCGATAAGGGCAAAAATGTCCAAAATCTAGAGA
CGTTAGCGGTCAAACAACACTGACTGGACAGAGCCGTGCCGGAAGGGCAAAAGCATAAGA
AAACCAAAGTGAGTTGGGCAAGAACGAGTGTTTTCCGAAACTAGGGGCAAATCTGTCGAG
GGGGACACAACTAAGGGTATAAAATCAATTTTCTCAATCATAATTTCCCAAATTATAACA
ACACATACTTATAACCAACAACACGTCATAAACAACACCACATTTAATAAACAACACCAC
TTTCTCATAAACAACATAATAAAGTTATAAACAACAACGCATAGTCATACATTTTAAGTT
CACAAATTCACAACAAAGTGTAGACTGTAAAGATAATTTTAAGTTCACACAGATTTTATA
CTTGTACGCCCCTACCCAACGGGTTTTAGGTTTTTTTAATTTATATTCCCATGGGTAACC
TTTAGTCTTGTCTCATACCCTTACCCTAATAGGGTTTTCTGCTGCAGGGTACATGGGTAA
TGGGTAGCTGTTGCCATCCCTAATCTGCACGTACGCAATTACTAGTTAGGGAAAGTCCAC
GAGAATGCCGGAGAGTGGCGCTGACCCAAGAAGCAGAACAAAAAGTACAGAAGGAACTAA
CCTCCTCGTAGAAAGCATAAAATAAAGCTAGAAGCAATTCCTACAAAAAAAACTAATGCG
GAAAACTGAAAATTGTAATGTCCAATACAAAGACAGCAGGCAAAATTAGTGCCGATTTGC
CAATTCCAGCATTCCCTGGCAAAACATATCACTGGTCGCAGCAAGCAAAGCTTGAAGCAT
TTGACTGCATATTCACAACAAGGATCATGGCAATCAGGGTTGTGTTTAAGTAGCTTGGAT
ATGGAACTTCACCTCCTTGAGGTGTCAAGTCCATGAGCAATAGTAAATTCCAGTCATATA
TAATATAACCCAAGATGGCATATAACGCCAACGGCTATGTAATATACAGCATAAACCACC
AGAAAGTGTCAGCATTTTATTCTTCGATGTGTGAAGCATGGTGAATGCAAATATACCATG
TGCCATCTATCTTCTCGAAGACGTTGGTGGCAATTTGCTTCCCCCAAGATTTTCCTTTGG
TCTTAACCAACTCCAAGCATGTAACATAACCAAGGTCACCACGCACATGAACCTCTATGT
TCTTAAGCTCAATGTTTAGAGGGAACTCATAATCCGCGTTGCAAACCATCTCCCAGCTTT
GCAAGACCACATCGTAACCGGATATCCGACCTGCCCCAGGATGGACAACATACACATAGT
CTCCTTTAGCCCAGATAGAGTTCATTGCAGTAAAATCTCCATTCTTGAAAGCGTTGTAGA
ATCGTGTATTTGCTGCAAGGACGGAAGCTTCAGTATCCTCATGGAGGACGTGCAGATCAT
CCCGGATTTTGGCAGCACGGGCATAATCTTCTTCCCGGATAGCCCTGTCCAAATTACGCT
GAAGGGTTTCTTCGTCAGCTAACTCGTCTTCAGTTTTTGGATAGCCATCAGCATCCCCAC
TTTTAACATGGCAAATTCTGGATCTGTTGAAGTTGGAGGCTGCAATTTGAACCCCTGCAC
TGAACGTGTAGCATTCTGAGAATAGCACATGGTTGTGTTTCTACTTAAATTCTATTGAGA
ATCATTATATCAGTCATGACATTTTCGGCAAGATTCAAATATCAGAAAATGGCTCATTCA
GAATTACAGTTCCGAAGAATATTCTAACTTATGCAGAAAATTACTACTCTAATAAATACT
CTGTAGTATCAGAAAAACACAAGTTGCACATTCTAGCCTTCTATGTTCATAAGTGGAGGT
AGACATGATAGCAACTGATGTTATCTTCTACTCCCTCCGTCCCATAATATAAGAGCGTTG
TTTACACTAGTGTCATCACACAAGCCTCTAATATACTTCAGAATAAGGTCACATTCATCT
AACTGTTGTTAGGTCTTCTCTCCTCTGTAAGTTAGGCGAGCTATATAAGATCATATGAGA
CAGTGCTAATATGCCATCACACAAGCGGATATTTGTACCTACACAATCCAATTCCATAGC
TGCATGCTTGTGCCAAGAACTCACATCTGACAGATGCCCCCCAGAACTGCTGAAACATGG
AAGGGGGCGCCCGACGGTGCGAGAACCGGAAAGAAAAAAAATCCCAACCAAACCGAGTGA
TTCGTGCAAGACCCAGGTAATATTGCGTTGGTTTATGCATGCAGACCAAGAAATCGAGAG
CAGTTGCCAAGAAAGGGGCCTCACAAGATTCTCTCCGCACTGAGTCGTCGGATGCAGAGG
CGCGCCGGGCCGGGGTTGTGATTATCGGTGAAGAACGCAGCTACCCTGAGCCGCGCACTC
GCGGACGGCCGCGAGATGGCGCTCGCAGCCTGCGCCGCCGACATCGCCGGGAAATAAGTC
GTCGCAGCCGCGCAGGCAGGCTATCCTCCGGCTGCTCGTGTTTATCTTTGACTCCCCTCT
CTCGCCTCTCTGCTCGTTGCTAGTTTAGGAAAATTATGAAGTCGTCCCTGTGGGTATGTA
TGTAGTTTTGCACGTTCCAGCGAAGCATGTGTGAAAGGAGTTTGTACTTTTGCACCTTCC
AGCGAAGCATATGTTTTTTTTTTTTTTTTGCGGGGAAAGCATATGTTGTTTTGCACGTTC
CAGCCTGACCTGAGAGCAACTACGACACGGTGGTCCAAACCGGCATCCATTTTATTACTC
CCTCCGTTCCTAAATAAAAGTCTTTATAGAAATTTCACTAGTAGACTATATATAAGTGTA
TATAGACATACTTTAAAGTGNNNNNNNNNNNNNNNNNNNNNNNATGTAGACTCCTAGTAA
AATCTCTTAAAAAACTTATACTCCATCGGTCCTAAAATTATTGTCTTAGGTTTATTTAGA
AATGAATGTATCTAAATACTAAAACATGACTAGATACATTCATATGTAGACAAATGTAAG
ACAAGAATTTTAAGACGGAGGGAGTATTTAGGAACGGAGGGAGTAGTTTTTTGGCCGCTT
GTATCGTTTATCCATTTGTCTGTGTTCGGTTTTTAATTTGGGGCCCTGTTTCTTTAAAAT
GTCCCAGGACTTTTTTTAGTCCCAATTAAAAAGTCTCTAGTCCCTACCCGTTTTATTTTC
AAGGACTAAACATGGACTAGAAGTCATTAAATGACATGCAAAGACCATGTTACCCCTAGT
AATANNNNNNNNNNNNNNNNNNNNNNTGCTAAAAGTAGGGGCATTGTTGGAAAAAGTGCC
AAAAAAGTCTCAAAAAGTCCCTCCTATAGGGACTTCTTCTTTAGTCTCAAATACCTCATT
TTAGTCTCTAAAAGTCCCTCCTGCTTTTTTCACATGGGACTAAAAGGGACTTTTTCTAGT
CCCTACACCAAAAAGTCCTTGAAAAGAAACACCCCCTCGGTCGATCGAAGCATCCAATAA
AGACAACCCGATTTGTGAGTGTGTTTGTCTCAGGTGTTTCATCAGACCTTGTGCGCGAAC
ACATGTGGGAGTGAGACGTGCTCTAAGGACAGCGCGGGCTACACAAGAAGCGCCACCCGA
GGTCCGTCCTCGTCGAGTTCACGTGCATGCACACCGTCGACGAGCTCCTCGGCACCCGTC
ACGCCTACAACTGCTCCCTCAAGGAGGATGTCGTGTACGGCGTCAAGGACCTGTTGGTCG
GGCTCGCCAAGGAGAGGCTACGACGCTCACTGGTCGAGCACGACAAGGCAAGCAGCATGG
CACGGCAGCGTGAACGCAGCCAGGGCAAGCGCGATGACGCGGCAGGGGCGACCTCGGCAA
GGGCAAGCGCGGTGGCACGTCATGACCAGGAGAGTGTAGCAGGGCAAGCGACGTAGCGCG
GTGGCACGACGCGGCAGTGAGAGCTCGTCTAGGGCAAGCGTGACGCGCTACGCGGCAAGG
AGGGCGCAGCGGCGCGACGTGACAGGGCGAGTTCGTCTAAGGCAAGTGTGGCGGCATGGC
GCGGCAGGGAGAGCTCGGCCAAGGCAAGTGCGGGGGGGGGGGGGGGGAGGGGGCCCCGCA
AAACTTCGTTAAAAGTCATCTTAAACAATGATTATAAGGGGGTTTCTGTGTGAGGGGCAC
ATGGGGA