morexGenes - Barley RNA-seq Database

Contig contig_60936

Source Contig contig_60936

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_60936 (6051 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_60936

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72038	1	172 bp	None	Available	Available	None
MLOC_72036	1	332 bp	MLOC_72036.1	Available	Available	None
MLOC_72037	1	3446 bp	MLOC_72037.1	Available	Available	LOC_Os06g04300.1, FRAME:-2, EVALUE:4e-38, 13106.m00383 protein tRNA 2-phosphotransferase 1, putative, expressed

CDS Structure of MLOC_72038

CDS Structure of MLOC_72036

CDS Structure of MLOC_72037

Contig Sequence (6051 bp)

>contig_60936 6051 assembly3_WGSMorex_rbca.fasta
TCCTCTCACTCCTCCCCCCGACCCCCTGCCACCGCACGCCGCGCGCCGGGCTCGTCGCTG
CCGACGAGATCTGGAGCGCGGCGGAGGAGACCGCGAGGAGGAGGGACGGGCGCGGCAGCG
CGGTGGCGGGTGGAGGAGGAGGCGTCATGTCTGGTCTCGTCTGGTTTGGTTGGCGCACAG
AGCTCGCGCGGTCGATGGCCCGGATAGGAAGACTGTAGTGGGCTCGTGGGTTTGCATGCA
GACACACGACTCTTTGCTTCCCGCTACGTTACACGTACGTGGGACTCCAGAGAGGTTCTG
GCGAGTTACCTGTGTCCCTGTCATGCAAACCGGCGACGGCGAGACGGCGAGTGAGTTTCA
CACGCGTCTCCTGGACGAATTCGACGTTATGCGATGAATTAAAAAATGTTCCACGGACAG
AGTAGATAAGTTAATGACCAAGCAAAGGGCGACCTATCAGGAAGTGACCAAAACATTTAC
GGTGTACCCTATCACCCTTTTTGATATGAACGTCTATGTTTGAGGTGCTTTGTACTCCCT
CCGTTTCTAAATATAAGTCTTTTAAGATATTTCTCTAGAAGTCTACATACAAAGCAAAAT
AAGTGAATCTATACTCTAAAGTATGTNNNNNTACATTCGTATGTAGTCCACTAATGAAAC
CTTTTTAAAGACTTATATTTAGGAACGGAGAGAGTACTTCAGATGAATTACAGTTTTGCC
GATGTCAGTTCGGTGAAATTTAGCCAAACCAATCAAATGAGATATAGGCACACCCACAAC
ACACCCACACCCCCACATGACACGCCCTTTTGGGTAGGAGCCCATCATCGACTCGAAATA
GCTGAAGGCAGTGATGTCAGGGCAGATTAGGGCCACAATGTATCCATTGGGCAAGGACAT
AGCTTCGGCGCCATCTAGGGAAGACAAGAGTGCGGAAGAAGGTGGGTTGAGGCGGGGAGG
TGAAGAAGAACCGGGTTGTGGTTTTTCGTCCGAAGGCCCAACCTAGTGTCAAAAACGTTC
TTATATTATGCAATGAAGGAAATAGAATTTCAATGAAAACATATACTCCCTCCATTCAAT
AATATAAGTCTTTTTAGAGATTCCACTGGAGGACTACATACGGATGTATATAGACATACT
TTAGAGGGTAGATTCACTCATTTTGCTTTGTATGTAGTCCCTTAGTAAAATCGCTTAAAA
GACTTATACTCCGTATTTAGGAACGGGGGGAGTAACACATAGTAGTGCTGCAGAAGAATA
TAGTATAGCTGTAGAGCACATCGAATAAGCCAGAACAGGATATGTCACAGCCATTGTAAA
CAGAATGGATTGCAACTTCTTAATTCCTAGTATGGGCCAACAAGGACCGACAATACTATT
CTTACGACTAGTTAGTAATAGAAAAACTACCACCAATGTTATAATACTGTGGACGCATTT
ACATCTGAAGCTAAAGCACGCAATATCCCATATGGAATTGATTAAAAAACAGTCTGATAT
GGACAGCCTATAAAGAGGTTCCACACATGAGGAGCATTTATGGAAAACAATGGTTACAAC
ATGACAGATGACCATGAACAGCATAAACACATCGTACTTTAGAAAAACATTAACACAGGG
GGTTTCAAGCAAAGAACATACTGTCACAGTGTGCCCCTGGTTAGCTCGAATCAGCAGCTC
TCCATCCTCCTCCAACAGACCAAACCTCTGCTTGTTGTCTCGCCTGACCGCCTACAGGCG
AAAAAGCAGAATGTTACTAGGAGTGGCTTACAACTCACGACAAGTTGCAGAGTAACCTGA
TTAATTTTACAACTTCCAGAGAATTCCCAATTTAAGCTCGAGGTGCTAGCTAACAAGATG
AAAACAACGTGTGGCAGACACAAGTACACCAGTGTGCTTAGAAAGATCATCTACTGTTAA
GCAAGAAGATGACGCGTGAGCAGATATTACCTCCCTGATTTCGTCCACCGTGTGGGAGTT
GAGCGGAACCTTGGCGAAGGTCTGCAGGTTGAGGCGGAGCAGGTCGCGCACCCGCACGTA
GCCATCGCTCCTCATGTCCAGCCTCAGCTCCGGTGCCATGTGCCGTAAGACCCTCGTCCT
GAGAAGAGAAGCACAGAAGCACCAGTGAGTACCGGGCTAGCATCGATGCAATTGTGGAGA
GTGAAGTCGGAGGTTTGTGGCAGTGTATTACAGGAGGCGGCCAAGGGCGTCGATGCGGTC
TCTGCCGTCACCGCCACCGCCACCGCCACCACGGCCACCCGGTCGCCTGGCGCCACCACG
GCCACCGCGCGGCTGGTGTGTGGAGGCGGAGGCAGCAGCATTGGAGCGGTAGCCAGAGGA
GGAGGAGGGGTTCATGGTGAGAGGGAGGCGGAGGGTTGAAGGGAAGGAGAGGTGGAGGAG
GAGGAGGGCGCGGGTCGGGGAGGATATTGTGGCGGCAGTGAGGGCTCTCATAAGCAGTGG
AAGTGGCAGTGGTGACACGACTGGCGACGCGCGGTGGTGGACGGACGACCCCTATTGATG
AAGGCGGGTGAGCTGGGCGTCGTTGCTGCCTAGGCTTGCGCAATGGTAACCTGAAAGATT
GAAAGCACAGAATATTGTCAACAACAAAGATTCATATTCTACGTATGCTTTGAAATGCTA
AAAAGAAAAAGTTCTGAAAGCGAATAGTAACCAAATTAATGTTGCCAGCACAATTTCCCT
CTTTTGTTTGTTAATTGTGTCAACTGAACCATAACCTGAAGCTTGTGACATGGTAAACAA
ACCTCGGGATCTACTTGAATTTTTTTTGCCAGATTTTTTACGCCATTATGGTTGCAGAAA
CGTGGATAGGAAATACAGAGGACGAGATAGCACTTAGGCAGATCGTAGATTTGTTCAGAG
CATACGGGAGACAAGTCGCTGTTCAGAAACTAGTAACCCGAAAAAGAAAGCCAGGCAAAA
CTACCATCGGCCTAGTGATTACCTTACGGAAATGATAAATCCCAAATGTCCGTGATTTGC
CATGTGATTACCTTACGGAAATGATAAATCCCGAATATCCGTGATTTGACCACGGCAAAT
CCAACGTTTTTTTTATGGCAATTATAGTCACGCGAGGATGGCAAGTTTCGTTTTGACACG
CGCAGCAATTGTCTGGCGAAAGAATACACTGAGCACAGAGTTGCCATGCTTGCCAACCAA
CTTGTCATCCCCGCGTCACTAAACTTGCCATCGAAAACGTTCGGCTTGCCATGGTCGGTC
GGTCAAATCCCGAACGTTCCGGCGTTATCGGATTCCTTAACTTAACAAACAACAATAGTC
GTATGACAAGTAAAACGCGGATGAAATCCTAGACATCGATCGATCTTGTAAAGTTGGAAG
AAAGTAACACTGCTATGGACCTATGGTAGACATAGAAGCAACGTCGGCCTGAGGCGCTCG
ACTGAGCGGAAACTAATGAACGGCTATGCGGATGAGTCTCGCTAGATCCGGCAGTAGGAA
GCGGCAGTAGAGAAGCTCGACGGACGCACCTCACGGGCTCCTCCCGGGCCTGGAAGAACG
AGGCCGCGGCGGCGGCGGAGGAGGCGGCGGTGGGCACGCGCGGCGGAGGAGCAGCGGGGC
GGCGGGGCGGAACGAGCGCTGCATCTGACGGGACGGCGTGGGAGGCGCGGGAGGAGGGCG
CGCACGGCGGAGGAGCGGCGGCGGCGGCGGAGCGAGGAGATGCGGTGCGAGGGACGGAGC
GAGGGGAACAAATCAAATCCTGCTACGACCGTGCGAGCCCGAGCCCGAGCCGCGATTTTT
TTCTTTTTTCTCTCTTCTCTTCTCTTTTCCTGATCTTGCCTTGCCAGCCCGGGAAAATGT
AAGTAAGGTGCTATCGTACCGACATGAAATTTTGAGACTTTTGGATGAGCTTTTTGTAAA
ATGTTCGAGAGCTCCAAAGAACCGTCGGATTTGAGATCCAGCGGCTCCCAGGAGCCTGTA
CCACATTACCACCTAACGCCCGGTATCCCATACTCGTCGCGGTATACCATATGTCTGTAT
TGATATTTCACGGTTTTGTAAAAGTATCATCTTCGTCGGGCAAATTTTCTGGCTTCTATA
CGAATTTCCCATAGATGGTGCTCGAGATGGAGATGGGTGCTGGTGTTGTGGATGAAATTT
GATAATGATGATGGAGTGATGAAGATGCTTTGTGGCGGAGTCTGCATAAAATATTGGGCG
GGCTGGATGGACCAATCTATAAGAAATTACTCACGTCTAGCTTTCCTCAGCCCATGGATA
GTTGTAACATGGACATGTGACGGAAAGTTGGGCGAGCCATGGCCATGTAGCCTTGTTGTA
GCTCTGCCAGTGCTCAACATACCTGACATGATCAACCCTTTAAGAATGAAATGTATGGTT
ATTTCTTCATTCCAAACGGCAAAAAAAACTATAGTACAAATCAACAGTTTCGTAGGGCAG
TTGACGACGACATGTAAAAGGAAGCAACAAAGGGAGCAATGTGGGCCCTACACATTTCTA
CACCTGCATTTTGGGCCTAGGGTGTGTTGGCACACATGCACGCGTGGATGTATATTGCAC
CGCTTTGAAGTTGTCACCTGATTGTGTTCGGATGCTCGGTAGTACTAGAGATTTTTTTTA
TGAGTTTGTCTATATTTGTGTTTAGCAAAGCCATCACGTGTGAGCCAGTGAGTTGTAAAC
CGGAATGTGGTGTTTGTATCAAATTATCTTGTGGGTAAGTCTTGTTTGCTGTGCACCTTC
CAAATTTCTTGGTGGAAACCTTGAGGAAGTCGAGATCATGGAGAAGTTTGTTTCTCGGAG
AGTGACAATTCACGTACAACGTCGGCACGTTTGAGCAGCTTACCAATACATCAAGGATGT
GATCTTAATTGAGGCAATCACTCACATGCAAACATGGGAGACGGAGACAACCAACTCTTG
TATTCACGTGTTAACTGCAAGACCCTAGGTAGCAAACGAAGGCGCGAGAGTGGCAAAAGC
TCGAATTACACGCAGTGCACCGGACACGCTGGCAAAATCAAAGGAAAAAAAGTCAAGCCA
TAAGGTTATGGTAAAATCGGTCAATCTAATGTTTGGAAGTCCCGGGACTTTGATCTGTCC
AAAGTCAAGTGCTTCAACTTTAGTCAAATGGGTCACTTTGTGTAGGTATGCTTGCATCCT
AATAAGCTGGTTATCAAGGCAAATTTGGTGAATCGGGAAGACAGCCCAAGTCTTTTTATG
GAAGAGGATGGTTGTAAACCAACTAAAAGGTACTACTCAATGAGAAATAAATAAAATGCA
AGTTATACATTAGTCATAGCATGACATGGTATCTAGACACAAGCGCATGTAATCACATGA
CGAGGTGCATGGAAAAAATCCTTGAGCTAGACCTCAATGTCCAAGGCTCAACAAAAATAT
TGATAATGGTTCAACTATTGAGATATGAGAGAAAAGGTCCATGTCATTTGAGTGTCTTAC
ATACAAACATCCCATACTCATCGAGGTATACTATATTGATATTCCACGGTTTTGTAAACA
CAATCTCCATCGAGATATTTTTCCGACATCTACACTAATTTCTCATAGATTGTGTTGGAG
ATGGGAGACGGGTGTTGGTGTTGTGGATGGAATTGATGACGGTGATGGAGTGGTGAAGAT
GCTCTTAGCCACTAGCGAAATTTGCAGACAAATATTGGGCAGGCTCGATGGGCCAAACTA
TAAGAAATTACTCAGGTCTGGCTTTCCTCGGCCCATGGGCTAGCTGTAACAGGGGCATGT
GGTAGAAAGTTGAGCGGGCCTTGGCCATGTAGTCTTGTTGTAGCTCCGTGAGTGCTCCTA
GCGAGGCCTTGAAGTTGGTGTAATGGCTCTGAATTACACCAGTCTGAGGCAACCTGGCAT
GATCAACCCTTTAAGAATGTAGTGTATGGTTATTTGTTCCTTTCAAGCGGCAAAAATTTA
TAGCAACAATCAAAAAATTTGTAGGGCAGATAACAACAACATGTAAAAGGAAGCAACAAA
GGGAGCAATGTGGGCCCTACATGTTGGGGGACGTCTGATACGTCTCCAACG