morexGenes - Barley RNA-seq Database

Contig contig_60871
Source Contig contig_60871
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_60871 (7609 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_60871

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_72007	5	1677 bp	MLOC_72007.2	Available	Available	LOC_Os02g22020.1, FRAME:-1, EVALUE:6e-98, 13102.m02467 protein MYB family transcription factor, putative, expressed
CDS Structure of MLOC_72007

Contig Sequence (7609 bp)

>contig_60871 7609 assembly3_WGSMorex_rbca.fasta
CAAGTTTGAAATGAGCATAAAAAATTTAAAAAAAAATCAAAATATTGGAAAACCAGTACA
CATGTTTTTACTTTGTCATATACTAACAACTCAAATTGATTGGCTTGAGTTTTCTACTTT
TATTTTGAATTACTTATGTTCAACCCTAACCTTTGAAAACCCTACAACCTTGTTCTTGAT
AGCCAAGTTTGTGAAGGTTTTTTCATGAAAAACATCATAGTCTAGGTTTCTTATTTTTCC
TATCGAGTTAGTCACATAGAACGATGATTGGCACCAGTTTTTTATTTTTTGATTTTTTTA
ATTAGTTATGCTCAACCCTAACCCTTGAAAACCTCTCAAAACCCCTCAAAACCCCATCAA
AACCCCGCACTTGTCCGGACCATTGGATTGCCGTGAATGGACGACCTGGATCAGGAAGTA
GGGCTACGTCAGCGATCCGCGAGCTGCGCTTTCGTTGGTCCGCCAGCTCCACCGAAACGT
TACGCTCCTCCCCATCGATTAACTGAAGAATTGCTGCACTCTGTTAACTGAAGAATTGTC
GCACTCTTCAGCTACCCCAACACCAGACTGTCGACAAGCTTAAGCGCTACCAGAGAGTGC
AGTGTTGCCTTGTCCAAGGTCGCGGACGAGGGGGGCTCAATGACGTTAATTCCATGCGAC
AAGAGTGAGGGGACGCAAAGGAATTGCTTGTGCTCACCGCCAGCACTCTGTTGTATGCAT
CGCAGACAGAGCTTCAGACTTGAACCAATGGAACACATCTGCAGACAGAGCTTCAAACTA
CGTATGGAAAACAACTGTATTATATATCTATGCATTGTTTCAGACTTCGGAACCAATTGA
GAACTTTGGTACACGCAACTGGAGTCATACTGCCAAGGCACCGGAAGGCATCTTGTTCAG
AGAAATCAGAGTCTTTTTTTAAAGAAAGGGGTTGCCCACCTGCCCCATTTTATTGAACTG
GAGCACACATCATTCGTTTACATCTCACATAAACTACCAGCAGCTAAAAAAGCTAAAAAC
CCTCAAAGCAGGCATAACAACAGGGAAATATCCTCGGAATTGGGCTCAGATCAACCAACT
CGCNNNNNNNAACAAGTTCAACCAAGCAACCCTGGCGTGGACCGACAGCCACAGACTGAA
ATTTTATTATTACAACTCATGGAATCACACACTTAAATCCAAGCAATCCGCAAGAGCTCT
CTTCGGTGCTTGTCCAGGAGCAGAATGAACCGCTTTACTACGTCCATCTGCGCAGTGTCG
CAGAGTTCAGATTAAGTCTCTTGATTTTAATGCTTGCTCGTCAGAATTTTAATGCTTGCT
CGTTCTCTTTTACCCCCAGGGCTTGTAATTATCTTGCGCATACTGTGGCTGCTTTTGGTG
CTATCCTACATGTTTCTTCTAAGCTCTGGCCGGATGACCTGCCAAATGATGTACTCGTTC
GCCTAACCAGCAATCTGAATCAAATCGACCAAAAAACAGAGGGAAACACAGGTGATGCAG
TGAGATCTAACTCAACACGGAGGAGAACGGGACGGGTATCCGAACAGGACAGGGTTCCGG
ATTCACTCACCACAGCCGCCGCCGTCATCGAGAATGAAAGCTCCGTCGTTGTTGTCACCC
AAAACAAAAGCTCCTCCGCCGCCGCTGGCTCACCGTCGGGAACGAAGAGGAGGGAGCAAC
ACAGATTCAGACAGGGCTACCCATACGGATAGGCACGGGGACACGTTTCACCTGATGCAT
TGACAAGTGGGGCCCGTAACCAGATGCACTGCCAAGTAGGGCCCGCGCTTACGTGGATAA
GTTGTGGGTCCAGCCCCTAACAGCTAATGAGGGCATCAGTTCAGATTAAGGGCCATGTCG
TGTGTGGGATATTTCCTTGCTCAGAAGTGTCGCACCGAGGCAATTCGGACGAAAGACGTC
GCACTCCTTCCAATTCAACTCAAAGATGTCGCATAGGAGCTATTGACCCAAGGGCGAGAG
CACGGCAGCGGAGGCCCCGCTGTTGGGATTCTCGGACGACGACATGGCTCGCGGATTCGA
TTCGCCGATGCAGCCCTCGCGGATAGGGGGCTCTAGCTAGGGTTCGAGGGGCGATTGGTG
CAATGGAGGCGACTCGATGCTGCTGTGTGGAGGTTTATTTTCTAGAGTACATCTGGGCAT
CTCCGGCCCGGCCGCAAAATCTAGGGCCTAGGCCCTATGGGTTTGCCCGTGGGCCGGGCT
TGGGCCTGAGTTTTGAGCCCACCGACAGGATCGGGGTGGGCTTGACATATTGGGATTTTA
AGTAAGAGGCCCGGCCCACGGCCCCAAGCCCGANNGGCTTTTCAACAGATGGGTCGGGCT
TGGGCTCCAAAGTAGATTCGATGGCAGGGCCTGTGCCGGAGTTTTCTATCGTGGGCTTTT
TAGGGCCCGACCAAGCCCATGGCCAGATATATTCTAGAGGCACGCAAGCGGGAGAGGGAA
GGGGATCCCCAAAGTTATTTCTCACTTTAAAAAGGACCGCAGGTTGAATACCATAAACTA
TATGGATTTATTTGCAAAATTTCTGAATGAACCATTTTCTCACTTAAGAAAGGACTGTGG
TTTAATTACCAAAAAACACAGGGATATTTCTGTAAAAATGCCACGCCGGTGAGCTGCTCT
ATTATTAGGTAAATATAAATATAAATATGAAGATAAAGATATAGATGTATATTACCATGG
AGAACATCAGATTTGGCATCCTTAAAGATCCAACGCAAGATTTTCAGTGTTTTCATTTTT
TTTTTTTTTGCTATTTACTCGTATTTTCTAGTCTCTCTTGCATGTGTGTACAACAACAAA
TAATGTGGCCTACCTTGCTGCAAAATGTGATCTTATACACTCTATTTCTCTAGGCTATGT
AGGTCCCAACTCCGAAGGTTATACGCTAAGGATGCCCTGCAGATGTGGTTTGCGACGACG
ACGACGACATAGCTGGGTTGTCCGAGTCCGAGTTAACGCCGCCCGTGTCGCCGCTCATCG
GGCCTTCCGACCGCCTACTCGACTGCTCTTTTGAGTGTGGCTTCACCCCTGATGGCAACG
TCGCCGTCGGAGCGTATACTTTGTTCGCGCTTCCCGGCGCCACATTTGTTGCATCTGTTG
CTGCTGCCGCGGCGGCGGCCGCAGCGGCATACTCCTGCTGGGGAACCCAGATGCAGCTGC
CCACCACGAAGAACTGCGGCGCGGGCTGAGTGGTGGTGGCGGCGCCGCTGCTCTGGGCCG
TGGAGCTCGGCCGCCTTGACGTGTGCAAACGGTACTTCTGAAACCCAATGCAACAAGTGT
CAGCTCAGACTCCATGTCTAATCAACAGCACTAAGCAAGATGATGTGCCGAGTTAACTAG
GGCATGGCTCCTGTCATCAAGAACAAGAAGCACTGACCTGCAAATGGCTCTTGACCTCGT
CGTTGGTGAGGCCGTCGACCTTCATCAGCTCCCGGATCTGCTTCGGTGTCGCCACTGCTT
GTGTACGGCACCAATTAAAATTTGTCAGGCAACTTTGATTTTTCATGAGGTGTTGATGAG
CTTAGGATATCGCAAAGTAACAAGTCTGGTCAGGGGAAGGGAACCAACCGTGGGACCCGC
CCAGCTGCTGCAGTGCTTGCAGGAACCGGCGGTGGAGCTCCGGCGCCCAGCACCGCCGTG
GCTTCCGGTTCGGCTGCGACGACTGCCCCTCTTTGTCTTTGTCTGTGTCTTTCTCAGTGG
CGTCCTTGCTGTCCTTGTCGTGCACCTCAGTGTCGCTGGTGGCCTTGTCGCCGCTGTCTC
CGACCAACGCCGAGCTTGCCGGCGCCGTGGTCGACGAGGCCGGCAGCTCAGCCTCCGGCT
GCTTCTCCTTCTCAAAGGGGTGGAACGCTCCCCCGGTCCTGGTGGCGTTCAGGGCCACCG
GTCTGCATGGCAGCACCTGGTAGAGCTCATCGGGAGATGCGTCAGCAAATTTATCTTTCA
ATAAAGTTCTGAAATAAAGAGGAGCACGGCAATCTGTACTAGTCAGCCACCTTTTGAAGA
GACGATGATTGCTGGGGCTCGCTCCATGTCAAAAGCTGCGCGGACTGGAGCCAGTCCGGC
ATCGCCTTCTTGGTCTCCGGCGTGGGCGTGGGCGTGGGCGGCGGCGTCTCGGCCTTAGCG
TTGGAGACCGGCGCCGGGGCGTGGGTGCTAGTCTCGTCATCCGAGGAGGACGGGGATAGG
CTGGGCTTGAGCGGGATGAACTCCTCGAGCACGGGCCCGTCGTGGTCGCTCACCGTCTCC
TCGCTGGCGGCGCCGCCCATCTGGCTCTTCATCCCCTCGATTGCTGCAGACATCACATCA
CACACAACACATATACGCGCGTGCTCGTCATTAATTAGAGACTCTAACCAAATGGAAAGA
TGCGATGGGTGGGAATATGGGATGTGTCGGTAGGGAGGGTGCGTACTCTGGGTGACGAGG
TCGAGGCAGAGCGGGAGCTCGCGCTGGAAGACGTGGATCTTGCGGCGCTCCTCCTCGAGC
GCGAGCAGGTAGTCCCGGAGCCGGCGCCGCGCGCCGTCGCGGTCCGCCTGCACCTCCACC
TCCATCGCCGCAGCCCGCAGGTGGTCTCGCCCGATGGGTGGATTGATCCGTCCCCACGGA
AAGAACTGGGCGGAGAGAGGGCGGAGGAGGTGGGGAAACGGGGGGAAGAAGGAAGGAAGG
AAGGAAAGGAATCGTCGTCGGGCCGTCGCGTATATTCGTAGACGGGGTGATGGGAGGATA
GGGACGGACAGGATATTCGGGGAGGGGGATTCCCATTCCGTTTCGCGGGCGTGGGGTGTG
GTGGGGTGTGGGGCTGCATGCACGTTTGTTTACTCGAGTGGGTGAGCCAGGATAAGGCCG
ACGACCGGCGGGAAGAGGAGGACACGCGGGACGCGGACGCGGACGGACAGACAGGACGCG
GGCCCGCGGATCGGCCGGGGCGATGCGGAATCTCGATCCCGGACGGCGACACGCTGGACC
GACGGTCGGGACGGGGCACGGGAAGATTCCCGTGAAATGCGCTTTTCTCCCGGTAGGTCT
CTCGTCTCCGGTGTGCATCCTGTCCTCGGACTCTTCCCCGCCAGTGAGCTTGCACGCTGG
CGGATCTCTCGCTCCGGAGACGAGGGGGAATATCCTGCTGCTATTCCATTTCTCATAGGC
TGGTCAGGTCAGCTCAGTGCTTCTTCACCGAAGATCACCAAGGCCATGTTTGGTTACATG
CATGCATCTATTTTCGGACGCTTTGCGTATGTGGCCTGACCCACCCCGAGTAAGTGAATA
TGGGTCAAAAACATGTTTTGATTACGGTTTGGTTGTGTGCATCCCTTCAGTCTAGCTAAG
CAGTAATATATAGGGGGCTAAAGCCGACAACCGAAAACTTTCGATATAAAAATAACCAAA
ACAAGAGTTGCAATTTAAAGACATGATCTATCATGCAAAAACTCGAAGGCATCGTATTAT
ACAACTATTTTTATAGGATAGTATCTTCTAATCAAATACTATGTCCTTAGAACATAGTGT
CTCTATAGCTCGGGTACCTTTCATAGCACTGGCGAAATACCGTTTGGGGCGCGTGTGCTC
CTTCCCAGGCGGCGGAGCTGCGGTGGCCATCTTCGTGGGCTCTAACTTCGGCAAATGCGT
CATTGTTTTCCATACGTGCTCCTTCGATGCATACAGAATGCTTCAAGACGTCGATTCGAG
GCGACGCCGCAATCTGCTTTTGAACCAAGCCGAAGTAGCTACTGGGCAACGGTTCGGCCG
GTCACAACCTGATGCACAAGTCCTTCATGGCAGGCTCGGTCATCTTGTGCAGCTTCATCA
GCTGCTTCAACTGATCAGATGCCACCTGAGGATGCCCCGAATTTTGGAACTGCGCCCAGA
ATAGCCTTTGCTGCGTCGCACCCTCCTACGAAGCAAATTACTTCTCAACCTCTACCGCAC
TCTTTGGCAGATCGGCAATCACACGTGGAGAACTCCATACTCGCTTAAGAGATACAAATC
TTCGCCTGCCAAAGGTACATTGTAATACATACCGCTTACCAGCTGCGATTTGCTTGATCT
GATGCACCTCCTTCTGGAGATCGTGTGCATCCTTCCGCGCTTCTTGGAGGGCGGCAGTGA
CCGACATCAGTTCGGTCGATTTTTCTCTTTCTTTTTGCTCAAGGGCCTCAATCTTTGTGA
TGGCCTCCTTAAGTTCTTGTTGAACTTCGTTAGCCCGGGCTTCCAATTTTTCGTTAATAA
CCTTTGCTTGTATGGCCGCTGCCCTCTGTTCGGCGGCCTCTTGTTTGGCTTGGTCCAGTT
CGGCTTTGAGCCGATCAACATCAGCAGCAACAGTTGTGACAGTCATTTGGATAGCACTCG
TTTAGAGGAAAATATTACAAGTAGTTGGATTAGAGAGCTAAAGCTTGCACACTTACTTTG
AGAGTCTTCAAAATGCTTGTTGATGCGATCCGGTTCCTCTTTCGAAACTTTTACTTTCCG
GTCCATCTCCTCCAGCTCTAGAGAGTTGGGGGATGGGGTTGATGTAGAGACCTGCGAAAG
AACATGTTTTATTAATTTTTAGATTCTTTCAAAATCTTTTTTCCAGGGTGCGTTCTCATC
AACCCATCAGAGCCTTGGGGCCTGCCAACATTGTTTCCAAATATTTCTAACCCCCGCATG
AGTCTTTCAAACTCACGCAAGGCTTGGGGGCTACCGGGCATCATAAAACTTTTAGACAAA
TGCATAATTACAAATGGAAAGTATGCGCATTACCTTGATGCCCGCTAACAGTGCATCAAA
ACCTCCTTTCAGACCATTATCAATGGGCTAAATGCTTTGCAAAACCGCACTCAGATGAGT
GCAGCATTCTCTGGGAATGGAAGGATCATTCATATCTTCCTCCCTTAGGTTGGGCCAACC
AGTTCGGAGTGGTCCATCGTGGATGGCTCCGAGTGCGTCGTAGAAGTCTCCCTTTGCAGA
GAGACTACTACTATGGGCATAGGAGAGGCAGGACCCTCCGGAGTTGTCTTCGAAGGAGAC
CAAGAGGGTCCGGGACCTCCCTCCTTTGTCGTTAGGGGGAGTACGACCATAGTATGGTCA
CCCTCGGCCATGGTATCCAGCAGAGGGGCACCTCCCTGGATACCACCTCCCCGGTCCCCT
CGGCCGTAGGGGAAGGTGAGTAGGGCGAGTTGGTCCCGCTTTCAGCCAGATTGGCTAGCT
GGTAATACCCCTCCGAAATTTGATCGGTGGGGAAATCACGTTGTGGGTTGTAATGCGGAA
TATGAGCCTAACTAGAACCGTGGTAATTAGAGGGAAGGTATATTCGAATTTTTTGTGCAT
ACCTTTTGGCTCGGGGTTTCACCCTGAGGGTACTTCAAGGGACCGGTGCCTCATCTGTGA
ACTCCTCATCCGAGTCCGGAATGTCGTTGAATAGGGCCATAGGGGCCCTACGTGGCTTCT
TCGAAGCAATGGGATCTTGATCTCCCTCGGGTCTTCGGACGCCGCTCTCTTTTTAGGGTG
GTAGGAGTCACTTACCTCCTCCTCATCTTCCTCTTCCTCTCCTTCCATGTGAGAGGGAGC
AAGTGTCTCTTCGGACTTAGTGTCCGAGGGACCCTTCGATCGAAGACCC