morexGenes - Barley RNA-seq Database

Contig contig_60830

Source Contig contig_60830

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_60830 (2288 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_60830

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71988	6	1270 bp	MLOC_71988.2	Available	Available	LOC_Os01g15020.2, FRAME:+2, EVALUE:2e-82, 13101.m01663 protein lissencephaly type-1-like homology motif, putative, expressed

CDS Structure of MLOC_71988

Contig Sequence (2288 bp)

>contig_60830 2288 assembly3_WGSMorex_rbca.fasta
GTGGATCAATATCTCTACAAGGTAGGCGCAGAATCTCCCCTGCCCCTGTTTGTCAATGGC
GGGAAGGGGGAAGCGGTAGGGGTGCCCTAGCAGTAGTGGAGTGAGGTACTGCAGGGCACG
ACGCGCAAATCGAGTTCAAGAATAGCTAAAGAAGGGTGCATTACCAATTAGAACTATTCT
CTCCTCCCTCCATCTCATTCAATCCGTCCACGACACACGACTCTACATTCCAAATCGACG
GAAGAAACAGAGCGCGAGGCCACAAATCCTTGCAAAATTGTGGGGAATGGGGCTAGGTTG
CGAAATTACTCATCAGAGAAAGCTCCTCCGCCGCCGATGACATATAACTTATATTTAATC
GATGATTTTTTTTTAGACAAGACGGAGGGAGTAATATATATTTTTCTAGACAAGATGGAG
GGGGTAATAGAGAAGATTGAATAGCAAAGCCCAGTGTCAAGTTTGTTTTTCCAATTGATA
GACTGCAATTGCAATGCATGGGCCGCTGCAGTTTTCTCTCACAAAACTCAAAAGAAAAGA
AAAAAATCTCCGCAGTGTTCCCACAGCACACAACGGCGGCGAAAAGGGGGAGCTGCGCCG
CCGGCGACCTCAATCGGCCCCGGCCCCGGCCCCGGCAGCCGCCCACGATTCGAGGTCTCC
TTTCCCATCTCCCACTGATCCATTCTCTTTTCTCTCCTCTCATAGCCACTGGTTCGCGGT
GGTGTTTGTCCGGTCGATCAGAAGAAGGGGATCTACATATCATGCCGCCGAATCCGTGCG
CCATCTCTCGATTCCTCTTTCCTCCCGGCCCCCAATCTCCTCCCGTGCTGGTTGCCAATC
CCCTTTCTCATAATTTCTCATCTCAATTTCGTGGTATGCGAGAGCTTTGTTAACTCTTGG
TTGTTGTATAGTTGTATGCAATCCATTTCTTCCCCATGTACCACCTGGACTGCACATGGG
GACTCTCTGACCTGCAGGATCTCTTCTACTGCTGCTGTTGATCTGGATTCCCCTGAAACA
GGACTGCTCTCCGCTTTTTCAGTTTCGACAGATGTAGCTTCAGTTGCTTGCTCTGCTTCC
CCATATGTCTCCACGATGAAAATGCCTATCTATAACGCACTTTTCAAATGCAGGAATCTG
GGCAACTGATGGAGCAACCCAGTTCCAGTCAACATGGTATTGCTGAGGTAATGTTGCATA
TCTAGTCAATATCCATGACATTGGTTAATTTTCGTCCAGGCGAAAGAAAATTATCCCTAC
TTATTTGCAGGACATCTATCTTGCACCCATTCCTCAACCTTCACAGTCATTACATTACCT
TCCTACGAGAGTAGTTTGTACACTATCACAGGGATCTAATGTAACTAGCATGGACTTTCA
TCCTTCACATCATACGCTACTACTAGGTACGATCAAAATCTATAATTTACTATATATATA
TATAGACGCAGTCACTCACAACTTTGCAAGTAATAAAGCTGTTTCATGTGATTTGGGTGT
ATATTAGGATTTTAACACCATATTAATTTTCTTCTCATGATTACTACTCAAATAGTTGGA
TCTGCTAATGGTGAATTTACACTTTGGGAGATTGCTACACACGAGAAGCTGCTCTCTAAG
CCCTTCAAAGTCTGGGACATGCAAGCATGTTCAACACAATATCAGGTAACTGAGCACAAT
TCGTAATTCTGTATGTAATTCGCTCCTCTTTGGTTTTAGTTCTAGTCATGTACCTTGTTT
GCAAGCATCTACATGTTCTCATGTTATATATATGTGCCTCACTATTTTTCTACTATGAGA
AAAGAGTGTCATGGCTAAAGACTCTTCCATTGCCGTTAATCGAGTTACATGGAGCCCTGA
TGGGGACTTGATTGGTCAGTGTCAATATTTTCAATCTCCAGCCAGTAACTTTATATTGCA
TTTAGTATATTCTTCGCATTGTGCTCCATTGTTGCTGAAGCTTACTTTTTCTTTTTCTTT
TAGGAGTTGCATTTACGAAACATTTGATCCATCTCCATGCATATCAGCATCCAAATGAAG
CACGCCAAGTTATAGAGGTTTGATCTTCTTTCATCGAACACCAGTTATATAGATGTTACA
TTTCATTATATTGAGTGACTTCTGTTACTAAACCATTTATTTTTCATCTCAGATTGAGGC
TCATTCTGGAGGAGTTAATGACATAGCCTTCTCCCGGCCAAATAAGCAACTTTATGTTGT
CACATGTGGAGATGACAAGCTGATAAGGGTATCTTATATGTCTTAAATGGTTATCATCTA
CTCCCTCC