morexGenes - Barley RNA-seq Database

Contig contig_60808
Source Contig contig_60808
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_60808 (7414 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_60808

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71977	1	1134 bp	MLOC_71977.1	Available	Available	LOC_Os08g13980.1, FRAME:+3, EVALUE:7e-147, 13108.m01499 protein glycosyl hydrolases family 16, putative, expressed
CDS Structure of MLOC_71977

Contig Sequence (7414 bp)

>contig_60808 7414 assembly3_WGSMorex_rbca.fasta
GAGGAGGGGAGTGCGGGAGAGTGCCCCGCGGCCGCCGCCCCGGTCGCGCGCGCGGCTTCG
GTGGCGTCCCCTCCGACAGCGGCGAAGCAGCGGGGGGGCGGGGAGGGGGTCCGGTGGCAG
CGCGGTACGTGTCTCTACGGGGAGAGGATGCGCGCTGGCGACGTGCTCAGGAGGCGCCGG
ACGAGATCTGTTCGTGGGAGCAGCGGACGTGGAGGAGCGCGGGCCGGATAGATCGGGAGC
CGGGGATGTCAAGGACTCTGGATCTGCACGCAGGGAGGCCGGGACGGGGGCGGCGGAAAA
TTATATCTTCGTTCTGATTTATTGGTCCCTTTCGTATTTTACATTAAACTTTGATCAAAA
TATTAATGCATGTCATAAAAAATTATGTTTTTAATTCATATTTGAACATAGTTTTCGATG
ATATCAATTTTGCTATGTATAACGTATGTCATGGTCAAATATGACCGTAAACACGAGGGA
ACTATAAACCAGGACAAAGGCACCAACCAGCCCAACTTTATTCAGCTCAAATGCAATGTA
CATCAAGGATTGCAATGGCCTGAAGAAGCAGTAAGAAGAGAAGAACACAACCTATGCATA
TGAGCTAAAAAAAAAGAGCACTAGAGAAAGGTCGTAGAAAGCAACAACCTGATGAGCTAC
ACGCCTTAAAAAAACTTTGAAACTTTTACATGGAAAGCAGACAACAAGTTGAAATTGAAG
GGAAAAACGGAGAAGAAGCCTGTAAAATTGAGGTTGCCACAGCCCAAACTGAAGAAGTTG
CCGCTGCCATCAGTATGTGACTGGAACCAACAACTGACTGCTCCATGCTCCGCCCTGCGA
AACCAAATCAACCAAGACTTGCCCGGCCGCATAACATGCACGTATGTATACAACAAAGTT
CTGCCTGGCTTCAGAAAGATTAACATCCTGCTGCTTCATATATTTTAATTGCACATATTT
TGGAAAAAAATTATCTGTTTTAATGATGGGAAATAATCATGTTACCAAAAATGAAGAAAA
TCACGCTCATGTTTACGTTTCAACCATATGGTTTGGAAATGTTCGTGTACACACAAAATA
CATACATGTAACAGAAAATGTTCATGGACTAAAAACGCTTACCAGGCAAAGCAAATCATA
CCGTGGAAAAATGGTCAAAGTATAAAAGAAACCAAAAATGTAAACTGAATATAGGTTTAG
AAAGAAGAAAAGGTTGTAAAAAATAACATAATTAAAAGGTTCATGAAAGTAGAATAATAA
AAGGAAACAAAAAAATGAAGGGAAAACTGGCTGAATACCAAAAGGAACAGTTCATAGTTT
TGCTGAGGAAAAAAGAATGAAATAGTCAAAAATTCAAATGGAAACCGGTTGTGGCCTGGA
AATGGGCCGGGCTGACACGCTCATGTGAGTGATTCCTCGGAACCCTTATGTGGTAATCCC
TATCTAATCCTCACTGTGCCAACCTGTCCGGATAATGGCGTGTGATGGGCCTCTCCTGCT
TTGGTTCAATCATTTTCCTTTCTATTCTTTGAATTTATTTTCATTTCCATCGTTCTTCCC
ATTTCTTTCATTCCTTTTATTTTTAAATTTTAACTTTTTTTTTATTTTCTTACCATGTTT
TGCTTTCCTTTTCCCTTTGTTAGTTCCTCTTTTAAGGTTAACATAATTTACATGATCCTT
TTAAAAACACATGATTTTTTAAAATACATGACCAGTTTATTAAATCACGCAAGCATTATA
AAAGAGACATCAACATAGTTTAAAGGCTTGAAGACTTTAGAAAAACAATATCTGAATCAA
TTTTTTTGCGTGCCTTGGTTTTAATATTTTTTTGAAATTCTAAAAATAGTCACACGTTTT
CTTAAAATATTGATATAATTTCAACATATGTACACCTATTTTATAAAAAAAAGGTTATGT
GACTTGAAAAATTGTTCATGTGATTCTATAAGTGTTCACTCATTCTTTAAAATTATGTCG
GCTATTTTTAGAAAATATTTATATTTTTTAGAAAAGAAAAAAGAAAGGAAAATTGATTTG
AAAATACCCAGCACAAAACCACTGAATAATCATCTTGGCTATTACTAGGCTGGTCCACCG
CTAGGGCGCCAATAGGCAAAGCACCCACAACATTCGAAATACAGGATAATGACTTTTTTG
GGAGCCTAATGCAGCATGTAATGTGTGTGATGTATTTATTTCAATATAGTAGAAGTAGCA
CGATGGGTTTTAAAGGGAATGACTTCATGTACATCCAATTTACCCCATCTATCACGGGCT
ATCTGGTGCAATATACTAAATGAGAAAGTGAATTCCCTCCCTCTTGTCGAGCCACGGCCT
TGATCAACCATCATGTGTGTGACCATTTGCAACGTGGGAGTCCACCAAACGGGGGTGTCA
CATTTTTGCGCAGGGAGCGCCAAATAGGCAATGTACTCACAACATTCGAAGCATGGGTTA
ATAGCTTTTTTGCGGGCCTAATGCACCATGTAATGTGTGTGATGTATTTATTTAATTATA
TAGTAGAAGTACCACAATGATTTTCAAAGGGAATGACTCCATGTACATCCAATTTAACCC
ATCTACCACGGGCTAGTGCAATATACTAACTGAGAAACTGAATTCCCTCCCTCTCGTCGA
GCTACAGCCTCGATCGAACATCCCCTGCGTGAGCAATGGCAACGCAGGGAGCCCACCAAG
CGGGGGTGTCAGATTTTTGCGCAGGGAGGACGCTGCACGCAGTGCTGAGTGGCCTTACCA
ACGACATTCTCTTCCATGCCTTCTCAAAAAAAAAATTGTTCTTTCCTTTTGTGGATTTGG
AAAGTATGAAAGTTCAGATTTTCTTTCAAGTAGTTGAAAGTTCAAAAAAACTATAGTCAA
AATGTGAAAGCCAAATAATTCATAACTTTCAAATTGAGAAAACTGGAGTAGATTTTTCTG
AAAGCTAATACAAGAAACTTCAGTAATTCTAGAAAGAAAATATCCTTGACATGTTAGAAA
ATGAGCGCCGGCTCGGTGGCCCACATGCTCGTACATTAGGGGCACCTCCAATGCTTGTGA
GATACCGGTTTGTAGAATTTGCATCATATGATATTTGATGATGTGGTACAAAATAAAGCA
CGAAGGAAAGCATGGTGTAGAACACAAACGTGAAATGAGAGAGCAAACTTATACGTTTTT
TCACCTTTTACTGGGCAAACTAAATACACTATGTTAGAGCTGTTGTATGATAAGTTGTTG
GTTGATGACATGGTCATTTTTGTTAGAACCTAACATACAAGCTATTGGAGATGCTCTTAT
AATCTCAGAAAGTATCCTAAAAACCCCAGAAAGAAAAACTGAGTTTAATTTGCTTTTCGA
TAAAGGACATTTCATTCAATTGTATTTAATTTGCTTACGATGTATAGTCTTTTTTTTAAA
TGGGGAGAATTTTACTTCCCGGCCTCTTCACCACACGTCAAACTTGATCCTCAGAATTTT
TTAAATGAGTATCAAGATATTTTTGATGTTTCACCACACGTCAAAATTGATCCTCAATAA
ATGGGAGAAAACTCCTTGTGCATGACCTGTCAATTCTAGGAATTGAACTCGGGTCGTTGG
GCTGCACAACCGCATGCCCAACCACTGAGCCAAGGCTCTCTTTGCATACGATGTATAGTC
TATGTTGAAAAAGGCCACACCTAGGTGGTGCTTAGACATGCTTAGGAATTAGGCGTCGAT
CAAACGCCTCGCCATGGTATAAGAGGAACTCTAGGCTCGGCAAGAAAGAAAATTTTCATT
CAAGCGATAAATCATGTCATATTGCATACACAAGCCAAATGGGTCATGATCCAATGCGCG
GTAGCCACTAGCTTACTCACTTGTATGCTCTAAATCAATATGCACCGCAAGCAAACGACC
CGGATCCTGATCGTTCATTACCACAGTATAAGCACGATACCAAGTCAAACCCACGAAAAC
ATCCCTTTATATAGCAAGAAAAACAGAGAGCCTTTTCAGTTGACCAGGCAACCTCCCCGC
TCGTGCATCTGTGCATGGCGCATCGGATGGTAGGTTATGCAGGTGGCATGCAGGTAGGTT
AGGTAGGTAGCGAGGCCAGCGGGAGGCCATGGAAAATAATCAAGCTCCCTGCTATGCACG
AGGCCGTGTTATTATCCAATAACGAGCCCCGATTAAGGCGAATCGAGGCGAGCCAGCCTA
ACATTTCCATGGATCCTAACATGCCATGCCCCTGGCAGAAACATTCTCAAGAACATGGCA
TGTTCCTCCAATTATTCGACCCCTTCCACGTTCCATCATCCCTCCATCATCCGCGTGCGC
GTTATAAATTCAAAATCTTGATCGATCGCATGGAAGGCGCAGGAGGAGGAGGAAGAAGGA
GGGAAGAGATCGTGTCAATTGGGTAGCCAATGGCGCCGTCGTTGCCGTCATCCTCTTCTT
GTTGGCATTCCGCGCTGCTGGTAGCCATGTTGGTGCTTGTGGTGGTCATGGATCAGGTGG
CCATGGCGTACCTGGACGACGACATCGAGGTGGTGTGGGGCGACGACCACAGCTTCTTCT
ACATGGACGACGCCGGCGACGACGAGATCCTCGCGCTCTGCCTCGACGAGACCCACGGCT
CGGGGTTCCACACCAAGGAGGCCTACCTCTACGCCCGCTTCGACGTCGACCTCATGCTCG
TCCCCGACAACTCCGCCGGCACGGTCACCACGCTCTACGTAAGTCGATCGACCTTCCACC
ACCGCCACGCCAGTGCGCCATGCCAGGGCGCGGTCACCGTGCCCAGCCCACGGCACGTTG
GCTGTGAATTGACGTATGCATGCGTGAATTTGATCGGTCGATGCGCGCAGCTGATGCCGG
AGGACGTGCCGTGGGACTACCACGACGAGGTGGACCTGGAGTTCCTGGGCAACGTCACCG
GCGAGCCCTACACGCTCCACACCAACATCTTCGCCAACGGCGTGGGCAACCGCGAGGAGC
AGTTCCGCCTCTGGTTCGACCCCACCGCCGACTTCCACACCTACTCCATCGACTGGAACC
CCAAGCGCATCACGTAAGCAAATCTATCAGAGCTCAGAGATCAACCTGCAGATACAGTAT
AGCTCATCGACGGAGAGCTCAAATCAACCATATGGCTGGTGCCATCAGGATCCTGGTGGA
CGGCGTGCCGATCCGGAGCTTCAGGAACAATGAGGAGCACGGGGTGGCGTTCCCGACGTG
GCAGAAGATGCGGCTGCACGGGAGCCTCTGGAACGCCGACGACTGGGCGACGCAGGGCGG
CCGCGTCAAGACGGACTGGTCGGGGGCACCATTCTTCGCCCGCTATCGCAACCTCCGGGC
GTCGTGGTGCCGGCCGTCGCCGGGGGTGGCGTGGTGCGGCGACGAGCCGCCGGGGTCGAC
GTGGTTCGAGCGCGGCCTGGACGCGGCGGCGCTGAGGCGGGCGCGCGACGCCCACATGAT
CTACGACTACTGCAAGGACCTCCAGCGGTACAAGGGGTCGGGGCTCCCCAAGGAATGCGT
CGTGGACTGAAACTGATGGCATGGCACGGTTCTCTGCTTTCTTGTAGTGTCAGTAGTGAT
ATGTCATTGGCTTTGTACATTAGTTCGATTGTTTGTTTTCGTCTAGGTTAAGGACTAGCT
GATTTAAAAAAAATATCTTTATTAGAAGTTTCATTGCAGGAATGTGTTATCTACAGAAAT
GAGAAATACATGAGTGTCACAGAAGTTGGGCTTCAGCGTTGGTCTTGAAGTAGTGACAGC
AAGTAACCCACACGATGAACAGTTTTAACTGATCCATCTTAAGCTGGTTGCTAACTACTC
ACTCTGTATCTAAATAATTATAGTAGGGGAGAACTGACCGAGGGAGTAAGAATAAATGAA
TAATCCTGGTGTAAATCTGAATATTGCTCGTTGTGAACAAGGTCTTGTACTACGTTTACC
TTCAAAATGATCAGTATAGTGAAGTTAGACTTTCTCTGAATCACAGAAGTTGCTGTATCC
GATGATCCGCCGTAAGAGAAAACCAAAGATGATATGCGCTTATTATTTATTGTCTAAGTT
ATTATTGACGTGAAAGAGAACATATGAATCCCATACTGAACACAATATGTCGCAATCACA
TTTACAAATATCTGCAGGAGTCGCAAACTCACAATACTCTGTCACAATATTTCCCAAGGA
AATATATTACCTAATGAATGGTTACTTCTACCTAACTGCAACAGCTACCATCCAAAAAAT
ATAAGATCGATTTGGTACCAACCAGCATCCTCCCTGAGAAGCAAATGCCGTTCTGACAAA
CAACTGTTTTTTTGGGGTATAAACTCATTGTTCAACTGCAACTAATGACAAACTTACTTC
GTTTAGATAGTACTCCCTCCGTCCGGAAATACTTGCCAAAGCAATGGATGTATCTAGATG
TATTTTTGTTTTAGATACATCCATTTTTATACATTTATGCGACAAATAATTCCGGATGGA
GGGAGTAGAAGCAAATGGATCAGCACTATAATTGCAGTCCACTCGACCACAGCACAAGAT
CAACTATACAAATATGAAATGGAAAAAATAGAGTACTATGGACACCCTGAGGATCAAATA
GGTTCATGGCATTGAAAACGTGAAGAGCCTAGATAGACTCTTGTCAAGCAAGGTGCAAAG
AACAAGCTTCCATGATATGCCGACAGTTTATGCACAACCTGGTTTCTGAATGTCAAATAA
CTTCCATAAAGCTACAATGTACTACCATTTATAAACACAATTATGGGTACCGACACTAAA
AACGCAAAGCATATCGATGTCTCAAACTGAGAAATCATTCAAAGCAGATCCAACTTTTCA
TGCCAATGCTGAAGAAATCAAGCTCTTACCGAGCCAATGCCAGCGGAAATCAAAGATCAG
TGGAATGTTGTTGATCAACCAAGGAATTTTCTTTCAGAAATGCTGTGGCATATGCACGAG
AAAATGCCGAGTGCGGAGTACACTATTTAGCCCAAAGTAGGGAGCATCTGAGGTTTCTGT
AGAGCCTGCCTGAGCCAAAAAGAATGGAATCAATGAGCCTGAAGAATGAAAATACAGTCC
CATACAGTCCTGTGAAACCACTTGACATTTGTTGTCAGCATCCTTCTTCTCAAATGGTCC
ATCCTTTGCCCTCTGTTCAGCTTCATCTTCCTTCTCAGCTCCTTCATGTCGGCAAAATCG
ACGAAATTGATCCCTAAACGAAACAAATTCACAAACTGGACTACGTTCAAAATAAATTCA
CTCAGCTGACCCTTTTGTGTGGCGCTCGACACTCGGGCGTCACACTACACTATGTAACGC
CTAGCATATGGGCGTTACACTTCTGGCCAACGTGGCACCCGGGGCCATACTCCTGGTTGT
GTGGCGCCTAAGAGTAAGGAGCCACACTACATTG