| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_60768
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_71953 |
1 |
754 bp |
MLOC_71953.1 |
Available |
Available |
LOC_Os02g32660.2, FRAME:-1, EVALUE:3e-140, 13102.m03539 protein 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed |
| MLOC_71952 |
1 |
3363 bp |
None |
Available |
Available |
LOC_Os04g51590.1, FRAME:+1, EVALUE:5e-41, 13104.m05266 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_71953
CDS Structure of MLOC_71952
Contig Sequence (7087 bp)
>contig_60768 7087 assembly3_WGSMorex_rbca.fasta
AAAACCACAGTTTTTCTAATACTGCAGTTTTAAAATCACAATTCTTAGAGGCAACCAAAC
ACCTCATTGTAAATAAAACTATGATAATCTCCAAAACTGCAGTATTCTAAAAATACTACG
AAAATTCTTCGTTATCAAACAGGGCCTAATATGCAATTTGTGCACTGGTTGTATGTGCCA
ATCAGACTTGGATATTTTGTGCGAGAGAACGAATGATTCAAGCAACTACAATCCATGTTA
GTAGTCCTTGTCCACCATATTGTATTTTGTGTTTATGGTGCTTACATCATCTAGTTGTTG
ATAATCTGGAACTACTTTGGATCATTAGCTGGGTTTTTAAAGTATATGTATCCTCATATT
TTTCAAGAGCTGTTGATTTCCGAAGTGCATGTGTCTTTGTATTTTTTTAAGTTAATTTTT
TGCCCCTGGTAATTTGAATTCCTGGATCCGCCACTGGTTGGGACGCCAAATTGATGTATA
ACTCTCTTTCAAAACATGCTCAACCATCGCGTGTCTTCAAGATCACATTGGCATCGACAC
CTCGAAGTCCAAGAGCAACATCAAGCTACACACCTTCTTCGCGATGATGGGGTCCAAGAC
CACACCCTTTACCGGGAATACCATCAACAAGAAGAATGCCACCTACAAGAAGAAGAGTGT
TTCTAGACACTCCAAGCGCATCATGAAGAGGAACGGCCACGACATCAAGAAAACTTTCAA
GAATCTACACCTTCGGGGACATGATGGAATACGATTGTGGACGTAAGTTTCAACGAGTAG
AGGATATGGAAACATGTGATGGTTCACCATTCATGCGGCCATGGTGGTTGGCAGTTCCAA
GGTGAGACCTGTGGTTTAGGGGCCATCGAGTCTATCCAAAGCAGGGGCAACCCAGTACAA
TTGTGTGGTTGGTATTTAGGCTGAAAGTAGTTTGGTAAGTGTATGACAACCGTTTGATTG
TGGACTTCTCTTGAGTGATCGGTTGTCACCTTTTCTTAGATTTGTAAATACTTTCATTCT
ATCAATGCATAGGCACAAGATTTGCATACTTTTTTGAGAAAAAATTCTAGCTTGCATTTT
CGTGGAGGAAAATCAAGAGAGGTAAGTATTATTAAAAAATCAAAGATGTGAGGAAATTGA
TGAAACAACATAAATGGTACTGTAGTAGGTAAAATCTGGAGATACAATGTGTGTGGTTAC
CTTGTCCATCAACCAGAATGCAATAGTCTTGTCTCCAACAAGTGCTTGATCATGACTTTC
AGCATAAGTAACACACTTTTCCAACCACCTTCTATTTGTTAGTGTGTGCACAATATTACC
CATCTCCCAACCTTCATCGCTTCCTCTGTTTAGAATAAAAAGTTGCAATTCATGTTTCAG
ATACATGATACTCCACATCAATAACCAGAACACGAGACCAAACTTTTACAGTTCCAAAAC
AGACACTTGAAACAACTGAGACAATAAAAATGATGAGAGATGCAAGTGAGGATATAACAT
ATTAAAAGAAGTGTAATATCATTATGAGAATTTCTAAAAGTTGGGTACATGTATCCTACT
TTTGTTGTTATACTCTATAAACTACGAAGTCGCAACTACTAATCACATTGTGTCCATATC
AAATACACTAACAATGGTACATGTTTGTGGACATTCATGTTGAAGTCCATATGTGCAATA
GTGTTACGCAAAGGGACATTTAATTTGCATTAATATACACTGCACAATCAGATCTTCTAC
CCAGTAAAATAATAACATATGCATACCAATTTTGAAAGCTTACTTGAGAAGTTCAATCCA
TTTATCGGCAACGGCCATATGTAAGCGATAGTCAAAACCAACCCCACCAACTTGAACAGG
AAGGGCAAATGTAGGCATTCCACTAACCTGAGAATTCAAATGAAAAACCAACACCTCAGT
TGAACAAAGTTATTATTGTTGAACGTTAGATGGGCCTTAGGCCATATTATATAATTAATA
ATTCCTGCATAATCTGAAAGACCAATTAGTGGTTTCGTGAAATGGTTGGAAATTTAGTCT
AACCACAGGAGTGGAGGAGAGTTTGGACCCAATATATAAGAAACTCTTCCATGACCCAGG
AGCAGAGAAAATAATTCCTGCATTTTCGGTCACACTAGTGTCCTATTTTAGGGCACCTAT
TGGAGTTAAAGGTCTTTGGTGTTGTAGAAAAAAAAACAGTTTTAGGTGTTGCAAAATTTG
CTCGAACCACCAAAAGGTGCCTTATTATAGGGCACCTATAGGAGATGCTTTAAGAGAGCC
AACTCCGCGTGGGCTTTGCCCTCCGACGGTGGTGAATGGAGAGGAGAAGGGTGGATGCTC
CCTATGGCGGCAGGGGTGAGGGCTCCGCTAACGACGCGGGGGGTGCGTTCTTTTGTTAGG
AACTTGACATGCAAATATCTAAGCTAGCTATCTTATCTATGTTAGTATGTTAGTACCTGA
TATTAAGCTATGAATATAGTGGCATTGCATTTATGCACAGGCAGGATCAGATAAGCATGT
TTCGGTAAGAGTTTGACCATAAGAATGGCAAAGAATAACGCTTTTGATACGCCAATGCAC
ATGCATGACACGATTCCCATGGCTCTCAACTCGATATATAGCTGCAAAGTAATGGCACAG
TGTGCACTGCATTTCAAAAGCTAAAGCAACTGCTGTATGCACCTCCTGTAAGAATGGACA
GAATAACCTAAACTACAAGAAAGATACAGAAGCACTTACATCTTCACCAATAGTAACGGC
TTCAGGATAAAGCGCGTGAATTAGATCATTCACCAGCATCAAGTAAACAACTGCATCTAC
ATCCGTGGCAAAGCCAAAATATTCATGGTAGCTCCCTGTAAAGGTTACCTAAAATAGAGT
GCAATAATGCAGAAAAAAGAGAGTAAATTAAGTTTCAAGCTCGGATAAAAATTGATATTA
CAACATATAAGGAAATATTAGCTAGGTGTAATCCTATCAAAGTTGCCCAGGTAGTCAAGA
TAGAATAAGGACAATCAAGCAATGCATTACTTGTAATCCATGGTGGGTATACATCATGGA
GGTCGCGCCGTCGAATCGGAAACCATCGAACTTATATTCCTCTAGCCACCATCTTGCATT
GGAAAGTAGAAACCTTATAACCTGTACAAAGATAACAATGTTGGAATCAGTTGGAAAATT
AATTAACAGATAAATGCATAACAGATGACAATATAGGAGTTCTATAGTTCCATACTTCCT
TATTCCCGTAGTTGAACACACGAGAATCCCACATCCAGTGATGGCCCCGTGAGCCGCCAT
GAAAGTAATGTGTATCCGTGCCATCAAAACCATTCAAACCGTCCAAGGTATTACTTGATG
CGTGACTATAGACAAAAAATCAAAAGTAAAGCTACGTACGAAAGAATGGACTAAATCGAC
TAGGATGACCAATGGGATAAGAGTGATCTGAACACAAAGGAAAGCCATAAAACAAAACAG
GGCTTTCAACCATGACATAAAACAGATTAAAAGTTAGAACCAATCTGATTTGCACATGAA
TGAACACAAGAGTTCAGTCTGAAACTGTCACTCTAGTCTGTAGGTGCTGGCACAAGGAGG
GTGTTCAATCAGTTTAGAGATAAGCTATATGCTTAGTTTCTTGAATATCAAGTTATCTAG
TGTCAAGGAGAAGTGGTTTCGCCGTATTTGCCTGTGTGCGCATGGAGCCATGGACCGGAG
GATCCATGCCTAGGCGACCAACTTCCCTAGACGCACCACCCCGGATTTCCTCAAAAGGAA
CCATGCATCTACCAAACTCGAAGGAGTCCATGTGCATATGCTGCAAGAAGCACATGAAGG
AAGGACAATACCCTATGCCCAAGGGCACCCGGCTGAAGATGAAGGGCACATTAAACATCG
CCCAAGACCTAGATTCCCAACTTAGTCAAACTGATCGAGATATCTCGTCAAGATCAGTCA
TACAGAACTAATCGAGTTGATCCTCAACTCGTTGAGAGCCTCCATGAAACTCTACATCAG
GAGATTGCCAAGTTCGAGTCTAGATTTTACTGAGCTGGCGGGGGCGATAAGCAGAAATAC
CACATGGTTAGCTGGCCCGACATCTGCAAGCCTCGTGACCAGGGAGGTCTGGGGATCATG
TCGTCGAAGCGCATGAACATCGTCTTGCTGACTAAGTGGCTGTGGAGGATCACCAATGGT
GACGGTGGGCTCTCGCCGAACATCATTAGGAACAAGTACCTTCGGGGCCACCCGCCGGCC
TTGTGCCAACGCTCCGGAGGTTCTCAGTTCTGGCAATCGGTCATCGAGCTGCTCCCTGTC
CTTTGCATTGGATCTTCTATCTCGATTGGATCCGGGTCCGATACGATGTTCTAGTATGAT
CGATGGGCTGGTGACTCGCCGTTCGTTGTCTGCTTCCCGGACTTATTCTCCATCGCGGTG
GAACCTAGGACTTCGATCGAGGTCGCCCTTTTAGATTTAGGGCGCGTCGCGTTCCACCAC
CCCTTCGGTCCTCCTGAGACCGCTGCCTGGGATGATATGGTGGAGTGCATCACCCTCCAC
TCGCCCAACGTCGACATTGCCTCGGACCGCATGTCCTGGCGCGTGGAACCCTCGGGCCGC
TTCTCCTCTAGGTCTTTGTACCAGGCCATCGCCCCGTTGATTGCCCCGGAGACCCCCACT
GCCGTCTCGGCCATTAGGTTACCACTCAAAATCCGAATCTTCCTTTGGCAATGGATTAGG
GGTCGGGTACCTTCAGGGGTGTAGATGCTCAAAGGTAATTGCACTGGAGATGGGGTCTGC
CCCCTGTGCGATATGATGAAGGACTCGAATCACATCTTCTTCAATTGCGTCACTGCACAA
TTCCTCTGGAGTTGCTTCCGCGACGTCGTCAGTGGTCACTGGTGCCATACCAATGTCCTT
GACCTCCTCGCAGAGATTCAATCCGCCCCCACGTCGGCCCGCCACATTAGGTGGCTGACC
ATCGAGGTGCTGACCTGGACTCTCTGGACTGTCCGCAACAAGCTTGTGATTCAGAGTGTG
CCTCTATGACGTTCCACTGACGCAGTTTTTTAAATGTGTGGTTTCCTGCAGCTGTGGAGG
CCGCTTAGCTGCTCCTCCGACCGAGACACCATCAACAACATCATCGCCGACCTTCGCTTG
ATGGCTCTCCGCGTGGCGCCCCCGCTTCCGCCTCCACCTCCCGAGCCGGATTAGACTAAT
GTGGCTTCTCCACCCGTTGTTGGGTTTGGGTGTGTGTGTGTGTGTCCCTTAGGGCTTGTT
GAATCGTGCCCTCAACGGAACCATTTGATGTTTTGTTGTGCTACTTCTGTGTGTGAGAGA
GTGTGTTGAACCTATGTCATATGTTGTGATTTGGCAGTTTGCTTTATTTATAAAGCGGGG
TGAAAGCCTTTTTTGGTAAGTGTAAACCCAAATTGTAGTCTATCTCGAGATAATCTCATG
TAAGGAGTAGGACAATTGGCCGCATTGAGGGGGGTCCAAAGCTGGGTAAGACGTGTGTCC
GTGTTCCTCGGACAATGTGTGGTTACCTTCCACTCCGACACCAATCTACCACGAAATAGG
CTTTCGCCCCGCTTTATATATAAAGCACACAGTCGAACGATACATTATGGTGAGGAGGTC
CTCTTACACAGCAGATCAACAAATACAACAAGAAGCATACAACTAGCCTAACGCTTCATC
GAAGCCTGACCGAAGATGCCTCAGCTCCACGACAACACCTTCAAGAAGGTGATGACGCAA
AGTGTCGCCGTTGTCGAGTCTGTACACACAGACAAAAGTTTTCACCCGTAGCCCTGGTGC
AAAGGCTCACGACGACGTTTTCAGAAAGAACGTGCCACCCACAGGCGTCACCGTCGTCGG
CGCCAAAGTGCGAAGCTTTCGCTCGGAAACTCGCCTGCACCACCATGAGGCACCCCGACC
ACTACCGCGAGGAAGGTCAACCCAGTCAGACCTGATCCGAGCACTATCACACTCGAAGGG
GAGGGATAGGCCATCACCTCCCATCACTACATCCCTTGCTGCCCAGACAACCAAGAGATG
AAGTCACCACCGCCACCACTGAGCCTGTCGGAAAGCCAACCGTGTAGCTCACCTTCCGGG
GCCGCCACCCCGGCATCCATGTCCCGATCCACCACAAATCATCCTATTCTCAACGTACCA
CGAACGGTCGGAAGAGCGGAAGACGCTTCCTTCCACTCCTAGCCCGACATCAGCCCCCGG
GTTTGGGTCGACACCTTCACCGTAGGAGGCATCAACACCTGTGTCCTCAGGCACTCCCAG
TGGAGAGGAGGGACACAACTTAGAGGTTGCCGACGACCACCATGGAGCAAGGCCCAACCA
AGTCAGCTGACCTAGGCCCAGTCGAGCTCGCATGTCGCCACACTCTAAGGCACCGACGCC
AATCCGAACGAAGGTACAACAGCAACCAGGGCGCAAACTCGGATCGACGCCACACGAAGC
CACAAGGAAGAAGGGCACTACCGGAAAGGCTTGCACCCGTGCGGACTAGGTCAGCCCCGT
GCACCTATGCACCAGCGAACGACATCTACTACCACACAACTGGATCCGTGCCACCCCGAC
CAACCAACGATACCACACCGGTTCAGCGCCACTACTCGGAACCACGGACGACCACTGCCA
CGACGCAGCGGGCCGCCCCTCAGCACCACCATGTCAGGCCCACACCGCCCTCCCAGATCC
ATGCCGGATCTGCACAGCTGGCACGAGACCGCCGCCCACCATTCACCTAGCTTGAAGGCC
GAGCCACGATCCCACTGCAGTGACCCACTATGGGTCGCCACCACCTCCCCGCGCCGTCCG
AAGATCCCCATCGGCCAGATCGGGCCGCCAGCGCCAGATCCACAGAACACGCCGTCGCCA
CGCACCACCCCACCACGCAGCCTCCGCAGGTGGACGCGCAGCAGCCACTGCTCCACCGGC
AAGTCGCGTCATCGGCACGGCCGCCGCCCCCCGCGCCGCCCCGCCCCCCGCGGGCCGCCG
CGTCTTTCCCCATGCGGGGGCTGCCGCACCACCTAGGGAGGGAACCCTAGGGGTGGCGCC
TCTCGTC
