Map Locations of contig_60765 (9979 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_60765

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71951 1 1669 bp MLOC_71951.1 Available Available LOC_Os07g37620.1, FRAME:-1, EVALUE:2e-66, 13107.m03874 protein fiber expressed protein, putative, expressed





CDS Structure of MLOC_71951






Contig Sequence (9979 bp)

>contig_60765 9979 assembly3_WGSMorex_rbca.fasta
TTCTTTGTGAGCGGAAGAGGTTCGCGATAATTTGGGTTGTACAATGTGATCAATAAAGCT
TGTGCTATTGATCGCGCGGTAGAGGTAGTACTTGAATTCCTCCGGAATGCACATCAATTT
AGAGGTTCAAAATGCATCTCAAACTTCGATACGGATTCCTCATTCCAGTAATGCATCTCC
TAAAATTTGGAATGGAGCAGACCTTCTATGGATTTTGTTAAATTGATGCTTTTTTTGATC
ACGATGTGTTTAAGGGCAGCAACAACGTTTTGGCTTATTTTATGCACGGAGGACGGAAGT
AGTCGATTATATACTTGATTTATTGATCAACGAAGAACGAAATACAATACGTAAGAGGGG
CGGCGTAGTAGTGGATGGTTTTGCTCTTACTAGGTTTAAACTCTGTAAAATGGAAGCATG
AACTTGCTGGGTTAACAAAATTTTCCGAGGAGCCCGTGGATGATACTTTACCTTTTCTTA
CGGATGAAATATTGTCTGAACTCTACTGTGTTAACAAATCGACAGCTTCTGGTAAACAGA
ACATGTCGCATGCTTACGCTGATGTGGACCAAACAACAAAAACCACAGCTCGAGCGGAAG
AAGCACCGAAATGCCATGAAACAGCTTAGTAAGCAAAGATTTAATACACATGCCCGGCTC
CCAAGACAAATTGGGGTCTCCAGGCCCTCACTAATCTGCATCATCATCCCCTATCAACTT
CAAGTCTCTTGTGCAAAACTACTATCGCTATCACCTTCTTACTACTACTAGGAGTTATTG
ACAGAAGCATTTCTTATAGAGAAGAAACAGAAACCAGAGCCAAAAACGAGCAGCACACCC
AACAACAACAACAAAAAAGTAACTTGCTTTGCTGTTCCCATCCGAGTTCATGGGAGGAAC
CAACCCTCTTCAGTCTTCAGTAACGGCCGCCGCCGCTGCCGACCATCTCGCTGTAGTGCT
TCAGCGACTCCTGCCGCTGCAGCCGCATCTCCATGTTGAACTTGTTGATGAAGGCCTCCA
CGCGCCGGTTTAGCTCGTCCTGCCCCAGCGACGGCTCGCGGCGCACCTTCCTCTCGGGGT
CGTTGAACGTCTCCGCCTTGCGCATCGTCGCCGCGGGGGGCGCCGCCTCCTCGCCGCCGC
CGGACGGACGGCGGCCCGGGCGGGTGTCGAAGGTGTCCGACTTCTTGAGGTGCCGCGCCA
GCGGCGGCGCTCGCCCCTCCGTGATGGCCTTCCACGTGCTCTCCAGAGTGTCCTCCCTCC
GCGGCCGCGACACCCGCAACGCCCTGCTGCCTGCAACGACACGCCCAGTCGACATCAATA
CAAAATTTCTTCTCTTGCTGGAATTCCACGAAAGCGCTCGAGATTCGGCGAAATTCTGCT
ATTTGCATTTGCAGGCCAGAATAGTCGAGGAATTAAACAGCTCGGCGAATTGCTCAGAGT
ATCAGGCAGTCCGTTGTTGTTACCTTCTGGGCTGGGCTTGGGCGCCTTCCGGCCGAACCG
CTCTGAGGACAGCGGCTTCTCCCTCTTGTTCGTCAGGTCCGCGAACGGTGCCACCTCAAC
CTCGGCCTTCGTAACCCTCCGCTGCGGCGTCCATGCAGATCTTGAAATCAGGAAGTCCTC
ACCCTCCTCCTCCATCTCCGGCGCCGGCACCGGCGCGGGGGGCGTCTTGACCACCGGCAC
GGCCTCCGGAACACGCGGCTCCGGATCGGGCGCCGCCATCACCACGGCCACAACAGGTAC
AGGCATGTCCATCGGCATCGCCAGAGCCGGCGCGGGTACCGGAAGCGGCTCCGTCCCCAC
AGCGGCGTGTGCGGTCGACGAACGGCTGGTCTGGAACCGCGAGGACGCGGCGATGGAGAT
GATGATGGCGTTGATGACGAGGTACAGGTAGGGCGGCGTGAGCCACGTGGCCGCCGCCGC
CTGCGCGCGAGGGATCTCCTCCGCCACGAACCCCGCCGCCGCAGGCCCCACCAGCCTCAC
TCCGGCGGCCACCAGCATCGCCGCCGCGGCCGCCGCCCCGGCCTTCACCGTCCGCGCGCA
CCCCATCGCCTCCTCGCAGCCGCCACCTAAATCCTTCCGACCGTCCTCCTTCCTTCTCCC
TCCACTCACCGTGACCGTGCGTGCGGTGCGTCTGTGCGAGCGAAATGAATGGAAGCGAGC
AAGCGGAGGTGGGCGCACCGGGGCGGGCGGTGATTTATAGCGGAGCACATGCCGAATATC
GAGTATCCGTGCGCGCGGGCCGCGCGGGGGGTGACGGTGAGATGCCAGCCGTCGGATGAG
GGCTTTGGACGGCGGGGGATGCACGGGAGAGGCTCGCCGCACGTTTTTCCGTTGCACGGG
ACGGAAAGGTCTGGGTCATCATGAGTAGTACTGTAGTAGTGTGGCCCGTGTGACCGCGGG
GTCTTTGGCCGGTGGAGACGAGTGGACGTCGACCTTCCCCGATTACTATTATTACTGTGC
TCATGCTTAATCTAACTGTTTGTTGTTCACCTGCTGATTAAGAAATCCCGTATCTTCATC
CGCAAAAAAAAAATCCCATATCTTAATCAACTCTGTTCCTGTAGTAGATACACCAGTAAC
AGTGTTGATATCGTGACATGTTTTCGCGCCCGCGTAAAATGCTAGCATTTTTGCACGGTA
GTAGTACAAAGTTGAGACACTTATTTTGGGACGAAGGGAGTAGTATCTTCTAGGCAACTG
CACAATCATGTCATGTGGGTTCATTGATACAGCCTGGATAGAGATGGTAAAGGCTGAAGT
GATCGGAGTAGTAGATGAATTAATACATGATGATGATGATGACTGTTGAGAGGGGCTTCC
ATCTTCAAACGGTCGGGAAACTAGCCGTTGGACGCGGACGCGGGGGGCCCGCTGGGCAGT
CGGCCCGTTTACGTGGGCCCGGGGGTCTCCGGGTCCCAGCCACGCGGGCTGGTCCGTCGC
GCCGAACCGCGTCCGCTGCCGTTTTAGCCTGAGCAAATGGTCCAGCTCAGATGACATCAC
GGACGCCACCGCCACAGCCACCGCACCGCGTGCTCATCGGCGGCAGCTCCGTCGCTTGCT
CTCGTGTCTATCTTGTCTTCTCTTTCCCCGTGCACTGCACCGGTTCTAGCCTCTTCCTTC
CTCACACACATCGAGCTGCATGTTTATAAGCTACGTACGTACTCATGACGTCCTACAAAG
TGTAGTGTAGTGTACGTAGAGTACAACACCAACTACTACTGCTACTACTCTACCCAGGAT
GATTCTGACAGTAAATATTTACCTAATCTGCATCCAAATTATATTACTACTGCTTCTGCT
CCGTTCTCTTTTTGACTCCATACTCTACTACCGGAGTTAGTTAATCTAGTATGCTACCAA
GTAGTGATGACTCGACGCACAGGTTGACACGGTCGCGGTCACAGCGCACGGCAACTCGTG
CGCTTTTGCGCTGCCACCTCCGAACGCGCGATTCAAGAAGCACGTACGCACGGCACCTGT
TCGGCTGCCCGCCCACTGCGCCCGCAGCAGCATATGCGCCCGGTGCGGCGCGCACTTTCT
AACGCCCGTCTCGGCACACGATGATGGGAAACGCGAAAGAAAACGGGGCGCGCGAACTAC
AACGTGCGGGATCGGCGGGGCATGGGCGCACGTGTACGCACCGCACCACGCCTCTGCTCC
GCCCGGTGCACCGTGCACGCATGCACCAACGGGTGATGCGGTGCGGTCAGGTCACACACT
CGCACGTCGAAACACAAGCCCTCTCCCTGTGAATCGCCTCAGGCCGGCCGGATGATTGAT
TAGCGTGCCCATGCTCGTCATGTCAAATTTCTAGGTGAAGCTAACGTATAAATATACGGT
GGAGTGATCCATTTTGTTTCTGTCTCTCTCTCGCTCGCTCGTACAAAAGTCTCCCCGGTC
TCGTAACCTGCATATTTAGGCTGCCTGCCTGTCCATCTGCGACCACACGCCATGACAAGG
AGCATGGGGGAGAAGGTCGTTCGCCGTATCCGACCGTGTATATTTTGACCCCGTCCATCC
CTCCATCGCACCCACGGACCCGGGGTGCGGCGTGGCTCAATCCGGGCTAACACGTGTCTT
CTGCGCACCACACGTACGTAAAAACGTTCGTATACGTACGCACGCGCTCTAGCTAGCTAG
GAGCGCGCAAATGCATGGCCACGTACTCACTTCTTCACGCACTGCCGTCATACTGGTCGA
TTTACAACTTATGATTATATGATTATTATTGCTCCTTTCTGAACGGTGAAGATCTGCTAG
AAGACATAGTATAATATAGGTCGTTATTCTTAAGGTGGCACCGCAGCACGACCGTACGAG
ATCTCCAGCTCCATTTAGCCAGCCAGCTGCTAGGTAAGCGCGGTTAGCTAGGTAAATTAG
CGTAGCACGCGCACGCCCGTAAAGTAGGTTAAGGTGGCACCGCAACGGATTAGCGTTCGG
TGCACGCACTAGTTCGTAGTACAGGTGTGACCATGGTTTGGCGTGTGGGAAACGGCATGC
TAGTTATGCTTGCCATGCACAAGCTTACACGTACTTACCGCAAGTCCGTAATCACGTGGT
TACGAAGACCAAAATCGAATAAATTACTGATCTTAGACTACAGCGCAAACAGTCGAAGGA
GATCAATTTGTAATCACTAGTGTAGTGCCTTCGCAAGTAATTTGTTAACAATATTTACAC
TACTAAGCGGCCGTACGGCGGCCTACAATTTGGACCCCGGGGGATCTCCGGGACAGCGAC
GGCTCCCCAACTGTGCGACGTCGGGGCCTCGGGGGTGGGCGGAACGACGACCTGGCCCTG
CCAGCATTGCGCTTCTTGCTTCCCCAAAACGAACTCGTCGTGTCTCCATGGGTATGGTGT
GCGTGACGGACCTGCAGATCAAGTCAAGACTCAAGACTAATCATGTCGGTGATCACCGTT
CCCTGTACCCTCCAGACCTAACTTTTCCTTCGCGCGCGTCACAGGCAGCATATCTAGCGA
ACGAAGATACTTGACCCGGAGACAAGTTACAAACACGTTGTTTAGAACTAGCTCCGGCCT
ACGTGAATGGCCAATATCGAACCGTACAATTAACTAATGGGCTGCTGGGTTGTTTGCTTT
CTGAAATGGCCATGCGTGGCATGCATATATGCATATACCCAGCCCTACTTGTCGAATTGC
CTCGTCTAGCGTGGCCCGTACGTACGGCGGCCTAAAAATGCTCTGCCTGCCACGAGAGCG
GTGGCAAATCTTCGCTATATACACTACTAGCTAGGCCCTAGGTGGCGGTGTCGATGAGAC
ATGTGTTGGTATCATGTTCCGTGCCACTTGTAGCAAGGAAATCGGCAGCGTGCGCAGCCG
TGCAGACACTGTGCGCGCCATATACGGGAACCCGGCAGCCGCGGGGATCTATCCACCGTC
CGATTTGTCATGGGTGACCTACCGAATCATGGCCTCTTTGTCATTTCCGGCATGCACGTG
GACAGGCCACCGGCCAGGGACAGAACGAACTCTCTTATTGAGTGCCGATAGGACACGGCT
AACGAATCCGCATGCCGAGGTGAGATCACGGATGTCCCAAAGTGTAACTTTATGGGATTT
TCCCCCTTCACCAAATGTATATAACGAAAGAAGTGAAAGGAGCGAACGAAGCATAATTCA
GATGGTTCGATTTCGTATGGTGAAACAAGCTCCCCATGACTCATGTCTTAGAAGATTTGA
CACTGACATTTGTATTATTTTTCTTAGCTTAGCGTGTAACTTTGTAGGATGCTTTGTTCC
TACTGAGGGTTATTCATATGGGATTTCATATGGTGAAACAATAACCAGTGGATATTTTAC
CCATGTGTATGATATTTATGTTGACTAGGAAAATGTTGGTGCATTGGAACAAGATATAAA
TATTCTCATACGTTAGTTTGTGATTTATCTGCTCATACTAATATAAATGTGTATCAAATC
TTTGTTAAGTAAATTCAGGATGAATTGGTGCATAAGAAAAGTACATTAATGTGATTGATT
ATCGTACAGGAAAGGTGCGAAAAAGGATGTTGTGGGACTAAAAAATCGGTTGGATGAAAA
AATCGATGAAGGGACATGATGGAAAGAGGAAGAACATGTTCACACAGCATTCTGCTAGCA
CAAACAAGAACACCACTCCCTTTATTGAGTGTGGAAGAATTTTAGTGTTTCACATGGTGC
ATCCCTGCACTGTCACATGTCATGTGCTAGACGTTTTGGTCATCATGGACTTTTTTGTTT
TTTCTAAAAAATTGTAGTTTCTACACTTTATTTTTAGTTTTCGGGTTCTCTTTGTTTCAT
CTATCGTGTGCTAGGCATTTTCCTCCTTTCTTCTTCGTCCTTCTCGACACTTGTGTAGCA
AACCATCTCTCTTAGTGTGACACTGTGGAAATTTTATCGGGTCTATTGTTATGTAGTCTA
CTGTCGTGACCTTTGGTAATCAGAGCCATCTTCAATGTGTGTTTCGCTTTCAAAATTGCC
TTGTAAATCCTTCACTGAGGACGTAATAAGGATACATTCCTCTCCGAATCCATGAGGCTG
AACAAATAGATAGTAATTTTGAAGTGTTCCTCGACTGAGAGATGGACATGCTTCAGGAGG
AATTGGCGCACATGCTCAAGGAGAGTGCGGCAACGACGACTTCCATTCATCTGTTGCTCA
GCACAATCCCGGTGCATGGATGTCATCCATGGAGGCCCTCCGTAATTCCTTTGATGATAT
TGGCACACGAGTGGTTTTGATGCATGGTAGTCACAAGAAGCTTGTAAGAGTAGTTGTTAT
CAATCATTTTGACTTTTAATTTTTACTTTTTGTGAGTTGTTGAAAATTTTCAGATAATGA
GGAGGATCAAGAATTACTTTGTGCCATCAAGGGATACTAAGTGTTCCTCGAGTCAGAGTA
TCAAGAGAATGTCCTATCATGAACCAGACTATGTTCTTCCGCGTCGAGGCTAGTTAAGAG
CATGTCAGTGGCCTTGTGAGGATTTCATGGATGGAATTGGTATTAAACACGAATTCGATC
AATTAGCGAAGAGGACATGCTTGACCACTTTCCTTGATGATAAAATGGTCGTATGAACTT
CTCAGCAATACTTTCGTGCAAAATTTACCTACACACGTGGATGCTATGAGTCTCAATTTC
CATTTCACTTATATGATGAGGCTCCTAGTATGACTTTGGCAGAATTCTATGATGTTGTTC
AATTCCTTGCCATGGTAGCACTAATGTGCCTCGACGTGGATATTTTGTGGAACTTTTGAG
AAGTGTATGTGTCGGTGATGTTAGGGGAGTTTCACAAGGCAGAATAACTACTCTATATTT
TTTCCATTTCATTACTTCACTTCTTTGTAGGAGATATTTGGTTGCTAAACCTGAATGTAG
AACCACTTGTGCCCGTGACTTGGGCATTTTGCGTGCTGCTCTTTCCGGTGACACGACTTG
TAATATGTGAGCTATTATTGCACACCACTTGCGTAAGAATATAGCGAATTGTGTTATTTA
TGATGTATTTATGCTACTCGTCTTGGTGGACACTTTCATATACCTATTAGATATGACGAG
TATCATGAGCTTCCTACTACCTCCGTCACGGTTTAGANNNNNNNNNNNNNNNNNNNNNNN
TTTCCACAATAGACAAGGTTTAAGGTGCATTGCATTTACTCCTAAGCTTCTAATTAGTGC
TCTGTTGTACTACTTTTATATGCATGTATAGTGTGAATGCTATTTTTAACTCATTTCACA
GCCAATCAATAACCACCTAGGTTCTAGAGAATTTTCATGCATGCCTTCTAAACCGTGACG
GAGGGAGTACTAGATTGTTGGACTTCGGTGCTATAAAATGCCATGAATTTATTATGCATG
AAGCTGCTTTTAATGACTATAAATATAAAATTGTGTTCAGCATGAATACTCATGATATGT
ATTACCATGCCTTCTCATGCTTTGCTTAACCGATGGGGAAATGGGGGCTAGTTCGTCATG
CCAAGTGACATCATTGCCAATCGGACATAACTAGAGGCGGCAAACCGTGAGGAGGTTATT
GATACGTCTTCAATGCATCTATATTTTATAAAGTATTCATGTCATGTTTATAATAATTTA
TATAGTTTTGGTGCACTTTTACATTATTTTTATAGACTAACATCTTAATCTAGTGTCAGT
TTCTTTTTTTCCATGTTTCATGTTTTCCAGGAAAACCATAATAAATGAAGTCCAAACACG
AAAAAAATTAAAATGCATTTTATTATATATATATGTGTGTGTGTGTGTGTGTGTGATTTT
TGGGAGAAAGAGTCAATGCAAGGCGGTTCTCGAGGGCCCCACAAAGCATGTTGGTGCGCA
CTACCCCCTGGGTGCTCCAGCCTTGTGGGCACCTTATAGGGCGGTTGGAGCCCTTCTTTT
GCCGCAAGAGAACTATTTTTTAGAGAAAAATCATATAAAATTTCAGCCCAATCGCAGTTA
CACATCTCCATGAAAAAAGTAATGATGAAGGGCTCCGGGGCAGGGGGAATGGCGAAGGGT
CAGGGTTGTGGGCGAATGTCTCCATGACCTCGGACCGCCGACATGACTCGTTGGTCCAGG
AGGGACCACAGGTTAGTGGAAGGGAAGGGTGAATGAATTTTTTTTGGTTTGGTTGGGAAG
TCTCTCACTATATATAATTCCTATTTCTTGTATTACATTCCCATATATTAGCACATAACT
ATATAGTTGCGGTTTCGAAACTCTACATGATTAAACATTCACAAATGCGATTTATATCCT
TTTACACCTCTGTGAATATTTTCAAGAAGTACCGAAAGGTATTTGACATCCATTCCACTT
CAAGTTCAATCTGACCAACTTTGGGTTTTCATGAACTGCAAGTAGGTGATATAAAGTTCC
AATTCTCATGATCTTTTTACTAGATCCTGTAAATACCATATGACCTCCAATCACATTTTT
ATGAAATTTCAGTAAGGGAATCGTCACCAAACTAATATATTGTAGTTCAGATTTTTTTTC
GAATTTGAACAAAATCACTTGCTTCAAATACCGTAATTAATTTAGAACATTTGGAATTGG
ATCTATGGAGGGAATACAACATACATGAGATAAAAGTAAGGTCGGGGTAAAGATTATGAT
GACTAAGCATGCCCACATTCATTTAGATTCAACTTGCACATAAGGCAAAATAGTAACATG
GTGAGGTTTTGACCATGTAACTATGTGATGAGTTCATGACATGAGGCATGATACGTCTCC
GTCGTATCTATAACTTTTTATTTTTCCATGCCATTATTGTGCAACTTTCACATATTTTGG
CAACATTTTATATGATTTATTGGACTAAGATATTAATACACTGCCCATTGCCAGTTCCAG
TTTGTTGTCAATGCTCTCTATGGAGTATTCCTGAAATATACTAGGTAAAAGTGTTAGTCC
AAGAAACAATATATGTTGTCATGAATTATTAAAACCATCAAGGGAGCATATGTGCTTTCA
ACACCGCTGAAAGAAGAAGGAGTTGGTGGCACATCAAGCGCATAAAGACCATGGTGTTGT
CGACCTATAAGGAGTACGCCCCTCATGTCCTGATCCTTAACAAGAAAATGAAACGGGTGA
AACTCAGCAAGGACATCATTATCACGAGTAAGGTTAGGAAAAGATAACAAACTACGTGAA
AAAGAGGGAACTCGAAGGACATTAAGGAGACGTAATTGTTTGGATCGACGAGTAAGAAGA
GATGCCTGACCAATATGTGAGATATGCATACCTTCCCCATTAGCAGTGTGAACCTGATCA
TGTCTAAGATACGGCTCCTATGTGGAGAGATTGCTCATGTTGCTCGTGAGGTGGTTGGTA
GCTCTCTGATGGCCCACAAGTATAGGGNNNNNNNNNNNGTCCTTTAGATAAGTAAGAGTA
TCGAANNNNNNNNNNNNNNNNNNNNNNNNACAACTGGTTTTCAGCAAGGTAAATTCTACA
AGCACTGAAATTATCGGTA