| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location | No map location |
Predicted Genes from contig_60742
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_71940 |
1 |
1805 bp |
MLOC_71940.1 |
Available |
Available |
LOC_Os10g39980.1, FRAME:+3, EVALUE:0.0, 13110.m03689 protein expressed protein |
| MLOC_72047 |
3 |
2671 bp |
MLOC_72047.2 |
Available |
Available |
LOC_Os10g01044.2, FRAME:-3, EVALUE:9e-127, 13110.m00006 protein isoflavone reductase, putative, expressed |
| MLOC_72001 |
18 |
5350 bp |
MLOC_72001.4 |
Available |
Available |
LOC_Os07g34980.1, FRAME:+2, EVALUE:0.0, 13107.m03574 protein TKL_IRAK_DUF26-lh.9 - DUF26 kinases have homology to DUF26 containing loci |
| MLOC_72157 |
5 |
1505 bp |
MLOC_72157.3 |
Available |
Available |
LOC_Os11g31540.1, FRAME:-3, EVALUE:1e-73, 13111.m03057 protein BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed |
CDS Structure of MLOC_71940
CDS Structure of MLOC_72047
CDS Structure of MLOC_72001
CDS Structure of MLOC_72157
Contig Sequence (8676 bp)
>contig_60742 8676 assembly3_WGSMorex_rbca.fasta
ACACTGCTCCCTTTGCAATGAGTACCAATCTAGTTGGCCAAACCAAACCAATAACTTGAA
GAGATTTGCAAAGATATGAAATCATGCATATGAGAATTCCAAAGAGACTCAAGTAATGTT
CATGGATAATCTGAACATAAACTCACTATTCATCGGATCTCGACAAACACACCGTAGAAG
AGTATTATATCGGATAGATCTNNNNNNNNNNNNNNNNGAACATGGTATTGAAGATCAAAG
ATAAAGAAGAAGCCATCTAAAGAAGCTTATAGCTGTGAGGATATCATGTGAAAATTCATA
CAGGTACAAGCACTCTTACGAAATGACACGACTGCAATAGATGAGGACTATTTAGTCATT
GAATCTGAAGAAAGCTATAGTGTTGTTTGTAATAATGCCATGAGTTGGGTTGTGGATTCA
GGTGCGTCCTTCCACATCACATCACACAAAGTGTATTTCACATCTTAGACTAGTGGTATT
ACTTTCAAAGTGAGGATGAGAAACAGTTGTTCATCTACAATTATTGGCAAGAGCTCTATA
CACATTGAAACAAACATAGGTTGCAGATTGGTGCTCGACGATGTGAGGCATGTCACCAAC
ATAAGGCTGAATTTGTTGTCAGTGTTGAAGCTTGATGATATTAAACATCCTGGTTATTTT
GGCGAAGGAAAGTGAAACCTCACCGAAGGCTCTTTTATTTTGATTCGAGCAAGTAGGCAA
GGTAATCTTTATGTGACAAAAATCAAGTTGTACAATGAGGTGTTGAATGTTGCTAAAAAG
ACATTTCAATTAAATTATGGCATAAGAGGCTTGGGCATATGAGTGAGAAGGGCATGCATG
CTCCTGTTCACATGGATTACCTCCCTTAGTTGAAATGTATATCCTCGAAACCCTATGCAC
ATTGTTTTGCTCGCAAAAAACATAGGGTTGCATTTCGCACACTCCCACCACACCATGCAG
AAAATGTTCTCGATATTGTGCACAATAATGTCTTTTTCATGACTAAAATATTCCACGGTG
GAGAATTATTAGTATAACATTTATTGATTACCATTTCGGAAAGGTTTCTGTGTATGTGTC
GAAACACAAATAGCAGACACTGGAAGCCTTCAAGGAGTTCCATGCCAAAGTTGAAAGAGG
TACTCGCAGGAAATTGAAATGCGTGATATTAGAAAATGGTGGTGAATATCAAGGTCCTTT
CAAAAAGTGTTATAGGAAATTTGGCATCGGGCTTGAGTAGAGTCCACGAAAGACACCTCA
CCTCAATGGTCTTGCAAAGAGAATGAACGTGACACTCACAGAGAGGGTCATAGCTATGCT
CTCTCATCCTCATTTACCTAATTCAGTTTGGGATGACACATCGATCAAAGCTATATATGT
GGTTAACCTATCTCCCTTAGTTCCTCATGCAGGTGATATTCCTTAGAGATTTTGGCCAAG
GAAGGAGGTATCATACAAGAACTTGAATTACTTTGGTTGTAGGGTGTTTGTACATGTTCC
AGGAGACAAGATATCCAAGCCTGATAACAAGAGAAAGAAGTGCATCTACCTTAGGCAATC
AAGTGAAGCATGCGTCTACAAGTTGTGGGATCTAGCCAAAATGATTATTGTGTGAAGCTG
AGATATGATGTTCATTGAAGATGACATAATAAAAGATATTGGGAAAGCAGGGAAGCCAAT
GACCAACACACCTCAAGTTGACATGGACCCAATTTGTCCTACTCTCATGCGGCACAATCA
CAGGGGAGATCGTGACACCAAAGATTTTTAAATGGCACAAATTGGATTTCATTATGTTTA
TGAAGAGGTACATCAAGGGTAATTTCATTATTCTGTTGTCGTATGTTGATGCTATGCTGA
TTGTTGGAAATGGCGGAAAGTGGATTGCTTTCTTCTAGAAAGCATTGAGTAAACCATTCG
CCATGAAGGATTTAGGAACAACTAAGAAAATACTTGGCATGAAGATGTCACATGATAATC
CAAAGAAGTAACTTTGGCTCTTAAAGGAAAGATACATTGGGAAGGTACTTCAAAGGTTCA
GTATGAAAGATGCAAAATATATTATCTCTCCTCTTGCATGCCATCACAAACTGAATTGTA
AACAATGTCCTACAAGCAAGAAGGAGAAAGAAGAAATGAGGAAAGTACCATACCAATCTG
ATCTGGACAGTTTTATTTATGCCATGGTATGCACTAGGCTTGATATTGCTTATGCAGTTG
GAGTTTTTAGCGTGTTCATGAAAAATCCAGGTAAAACTCACTTGAAACTCTGGTATCTCG
AGGGAACTTCAACGTCTTGTTTATGCTTTGGAGGCAATGATCCTATATTATGGGGTTACA
TATGCAGATTATGCCGGCGAAAATGACCATAGGAAGTCCACATCACGATACCTGATGACT
TATGTAAGGGGAGAAGTGACATTGCAATCAAGATTGCAGAAATGTGTCTCTACATCAACT
AATGAAGTTGAGTACATTGTTGAAGTTGATGCTGACACGAAAGTTTTTTGTGGATGAAGT
ACTTCTTGCAGGAACAAGACATGAAATAAGAGAAATATGTTATGTTTTGCGACAGTCAAA
AAACTATTCATCTTGCCAAGAATTCAAGCTACCACTCTCGAACCAAGCACATTGATGTGA
GGTATCATTGGATTCGAGATGTTGTGAGTTTCAAGTTGCTAAAACTTGAGAAGATCCATA
CAGACAACAATGGCTCCGATATGATGACCAAGATATCACGAAATGAAAGCTACAAGCGTG
TTGCAAGGTAGCGGGCCTGGTGGTTCCCCCTCATGAGTTGGAAGGGGAGATTTGTTGGGA
TATCCTCCTCATGTGGGTTGTGAGGAGATACCTATTTGAAGCCTTTTAGGCAACCCAAAG
AGGTGCAAAAGCCCATTACCCATTAGGGTTCTGACCTAGGGCCATTTTAAACTTTGCACA
TGAGAGAAGGGAATGCTTTCCCTCCATCCAGCAACCACCATCAAATGTGACGAAATCAGT
TCAGCCTCCATTGGAGAAGAATAGAGAAAACCAAGAAAGAATGGGAAGAGAGGAAGATTG
AAGGAAGAAGCTAATGGAGCTCTTCCCCTTTGTTGTGATGGTCCAAATCCACTACCTTGT
CTCCGTCAAGCTAAGGTTCCACCATCTTTGGTGAGATTGTTCCAATCCATAGCTCTTAAG
CTGCAAATCTTGTTGTGTTCATCCAAGATTAAGAAGTCTTGATGTATGAGATCCTTCAGT
GCTATCTAGAAAAGAACTTGTTATATCCCACATTTGATAACAGAAGAAGCTGATTTGGGT
GGCTTCGGCCCGTGGTTTTCCACCTCAAGTTGGGGTGGGGATCCAGTTAAAATTTGGTAT
TTCTGTGTTGATGCTTGTTGTTGTCCAATTGTTACTTCTGTCATCAAACACTCATGTGAG
AAGCATCTTGTCTGCTGAGTAATTAATTTACCTTCATATATGTTGTTGCACATGTTTCCT
TCGGTGTTAAGTAATGATCCTTGAATTAGTACATGATGTGGTGTTGATCTTACTTTGTTT
CTACTGCACGTTTTAGTCCATCACAAATACATTTGTGTGCTAATTTCCAGCATGCTGAAA
CCTTTGAAAAGAGTGCGAACAGAGAATTTTGAATCCTGAAATATGAATGAAGGCAGCCTT
GTCCACCTCATCAAATATGACATTCTTCAATGTACTCTCACTATTCATTGGATCTCAGGT
TGTCAGAATGAACCTCCACCACAGCCAAATTAAGACCTCTTGTACTTTGTTTTCTGTTTT
TCTTTATTTTCTGGGCTGTAGCAATTGCTTATTGCTTACAACATTGAATTTTAACACACT
GCTTGCTGCTATTTCCTCCCTCTTAATATATCAGCAGAAAAATGGCATTTTCACAAAAAA
GAAACGTGGCCGTCAGAGAGCACATGCGCTTTGATGTAGGTAAAAAATGGAGGGATAACG
TGTCGGGCATGCATGTTACACACTTAACGGTGTTCACTAAGCAACAAAATGTGTGTTCAC
CTCAGCGGTTGCACATTTGTCAAGCTATTTTGAAAGACTACATTCAAAAGCACATGATGT
TAAATATGGCTTGGAGAAAAATTGCTTTCGATGAGTTAAAAATATTGTTTGCGACACTCA
AATGGTATAGAATAAGTTGGTATATTTTTTCTAGAATATGTCAGTGATATACCATATTTT
TATAGAGGTAAAGGAAAACAAAACACGAACACCAAGCACATTGCGGACGAAGGCTCAATC
ATACACTCACACCACCAACACCAACCCAATAGCTGAGATGGTCTGGTTCCTTATGGTAGA
ACAAACCAACGAGGGTTCAAGTGTAATAGCAGAGTTTCGGCGATGGGCGCGTGCGGATGG
ATACATGTAGGATGATGACCCTGTCAGTCATCACGGTGGCGTCGATGGCAGACCTGACAA
GATCGATGCGTGAGTACCTGCTCTGGAGATGGACGAGTGGAAGACGATGTCGACGGCTTC
TGAGAGTGCGCCTGGACCGGTGTGTGACACAGTCCCAGTATGTGGCTGGGCTGGGACACC
CGACTTTAGATGTTAGGCGTTGGTGCGATGTTTGTTTGGTATTCGATTTGGATATTCGGC
ACGCCTTCATCAAGGGCATTGGATAGCGATAAGTGTTGTCAAGATGATGGATTCAGGCTT
ACTGATATATTTTTTTGTAAGATTTTATGAATAATTAATAAAGTGGTTGCATGCATCATC
ATGATGCAGACACTTGTGATCCTCCTTTAAAAAAAAATAGATTAAACTTGGCATTTGTGG
TGCCATATTTCTGAAATGGACTTCTAATGATATACAAGATGTTAAGACGGCTCAGTATAT
CGAAGGTTAGGTATATTGTTTATGCGCGATTGCACCGTGTAAAATAATCTGTTATTGCAA
AGTTTAGATGAAAATTAAGCTTAAGCTGGTTATTTAGTTGAATAGATAGTCCCTAGTGAG
CTACGTAGCTAGTGAGTAGTGAGTGTGCAAGCACATATATTTTCCTTCCATTAGTCCGTC
CATCATGTTGTGTCGCTAATGCATGCCTCATGCAAAGCTCAGTACGGCTTTATATATATA
GCTTAGCTAAAAGATTTTAGCGTACCTCAACGTAAGAAAACGTACGTCGTCGTGCAACTA
GCTCGGAGCCTCGGACCAATGTCGTGATCTGCAATTTGCAGGGCAAAAAGCGTGCACCTC
GCGAGTACTTAAACCCCTGGGGAGTCCCCTCGATTCCCACAGCACAAGCCACGCCAACTA
GCAGCTGGGATCGATCGATCGCCCAGTCACATACGAGTGAGAGAGAGAGAGACAGTTCGA
TCGTCTAGCATGGCGCTGGCGTCCTTGTCCAAGGTGGTGCTGGGATCGGCGGCGTTCGGG
GTGTTCTGGGTGCTGGCCGTGTTCCCGTCGGTGCCTTTCATGCCTATCGGCCGCACGGCG
GGCGCGCTGCTGGGGGCGGCGCTGATGGTCGTCTTCCACGTGATCAGCCCGGATGACGCC
TACGCCTCCGTGGACCTCCCCATCCTGGGCCTCCTCTTTGCCACCATGGTCGTCGGCGGC
TACCTCAAGAGCGTCGGCATGTTCGGGCACCTGGGCCGGCTGCTGGCGTGGCGGAGCCAG
GGCGGGCGCGACCTCCTGTGCCGCGTCTGCGTCGTCACGGCACTCGCCAGGCGCTCTTCA
CCAACGACACCTGCTGCGTCGTGCTCACGGAGTTCGTGCTCGAGCTCGCCGCCGAGCGCA
ACCTCCCCGCGAAGCCGTTCCTGCTGGCGCTGGCCACCAGCGCCAACATCGGGTCCAGCG
CCACGCCCATCGGGAACCCGCAGAACCTGGTCATCGCCTTCAACAGCAAGATAACCTTCG
TGGGATTCTTCCTCGGCATCCTGCCGGCCATGGTCGCAGGCATGGCCGTCAACATGGTCA
TGCTGCTCTGCATGTACTGGAAGGACCTCGAGGGGAACAGTCCCGACGCGATAGCCGCCG
AGAAGGAGATGGCGGCAGTTGAGGAGGGTCGCCGGCCGTCCCCGGCGACGTCGGGGACGC
TCAAGAGCCCCGGCCAGACGATGCTGGTTCAGTCGTCATCGCTGGTCGCGGCCGCCGACC
ACGACTCGGTGATGGTGGAGAGCATCTCGACCAAGCACCGGTGGTTCATACAGTGCTCGG
CGCCGCAGCGGAGGCTGTTCCTCAAGAGCTTCGCGTACATCGTGACCGCCGGCATGCTGG
TCGCCTACATGCTGGGGCTCAACATGTCGTGGACCGCCATCACCACCGCCGTCGCCCTCA
TCGTCGTGGACTTCCGCGACGCCGAGCTCTGCCTCGGCAAGGTGTCTTACTCGCTGCTGG
TTTTCTTCACGGGGATGTTCGTGACGGTGAGCGGGTTCAATAAGACGGGGCTCCCTGGCG
CCATCTGGAACGTCATGGCGCCATACTCCAAGATCAGCCACGTCAGCGGCGTCACCGTGC
TCTCCATCATCATCATTATCCTCTCCAACCTAGCCTCCAACGTACCGACCGGTTAGTGAA
TTATTCTTACAAATCAAAGTGCTTCTTTACACACCACACTGTGCGTATCACTTGTGCTAG
CTGGTGTGCATGCACGTAAAATATAGTACGCCTACTATTTGTGTACATCTTCCTTGTTAC
GGCATATAACATGGAATAATTGCTTAGTGGCAAGCTAAGGGACACGGAAAGTACTCCCAG
TTTCGTTCGGGTGTGCCGCTGACACATTAAGCAATATGTATGCCGTACATGTGCGTGCAT
GACAACTGACAAGACAGGTTGAAAAAATGTTTGGCAATTAACTAACACGAGGATACTTGT
GGTTCATGCAGTGCTGCTGATGGGTGACGAGGTGGCGGCATCGGCAGCGACGATCTCGGC
GGCGGCAGTGACGCGGTCGTGGCTGCTGCTGGCGTGGGTCAGCACGGTGGCGGGTAACCT
GTCCCTGCTGGGGTCAGCGGCGAACCTCATCGTGTGCGAGCAGGCACGCCGGGCGCCGCG
CAACGCACACGACCTCACGTTCTGGAGCCACGTCGTCTTCGGCGCACCATCCACGCTCGT
CGTCACCGCCGTCGGCATACCCCTCATCGGCATCATCAACGCTGCCTAGATTCACCATAA
TTATTTAGTACTTCCTCTGTTTCTAAATATAGGTATTACATGCCGATCGAAAGTAAAAAA
ACTTGTCAAACCGCTGCATGCTCAATTATATATGCATGCTCCACGCGCATGGTCGATCCA
TCGAACGAGTATTCGAGCGGAAATATTTCTGAAGTTTTTAAGAAGTGATCTTTGCATCTA
CGAGATGCATGCACACACTTCATTAATTATTTATAAAAATCTTATAAAGTAATACATTAA
TATATCTAAAGCCGTTATCTTGATAACATATGTTATAACTTTTATTCATTAATGAAGGGA
TGCAGAAAGTGTGAGCCGAACTAAACCTCTCACCTAATCCTAACATCTAAAGTCCAAGAC
CCCAACCAAACCACATACCCGGTCTGAGACATAAACCGATCCGACGCACTCTCATAGGTC
GTTGTCGTCTTCCATCGATCCATCTTGAGAGTAGATACTGATGCATCGACCTTGTCACGC
ATGCTGTCGATGCCACCATGGCGCCACACAACACATTCTCCCTACGCACGTTCATCATCA
CACATCTGTCGACGAGGCCCTGCCGTGCCACGCCATCGAGACTCCACGTCATTGATGTGT
CACATGGAACGCCGCTTCACCGTAGAAGTCGTTCACAGGTCCCTCGAGCCTATGCATACC
TCCAAGAATGTCGCTCCTAAGGGGGATACGACACAAAAACGCCGCCGTCATCCAATCAAT
CGATCTAGGGCTTCCCTCAGAGGTGGCGGATTGTGCTCTAGAGCTTCTCCATGACGATGC
CTTCAAGAAAGGGACGACACAGAAACACCGCCATCGACGGCCTTGACAAGAAGCCAAGAG
TAGGGGTTTCACCTTGATCCGCTCGGGGAACCTCTATCTAGCCTCGTGTACAAGGGACCA
CCACCCATCACCGCAACTGTGCATGGAGCAGGACGCATTGGCCCGATCAGATCTCATCGG
AGGCTGAACCAAAGCTACAACCGAGCTATCCACTAGGCCCTACATGCCGCCGCCGCCCAA
TTTGAGACCCGGGTGGCCATAGAGCCTCCCATAGACGTCGCGCCGCTGGACCCGAGCAGT
CGTGCCTCCACGCATTGTGGGGGGCGCCTCACCCCATGCTGCAGGATAGAAGGAGAGACC
CCCGCCTCCGCCATCTGGCCCCGGGACTTAGCCTTGGCAATGACGGGAGGAGAGGAGGGA
GTATATCGGGGCTCGGTGGCGGCTGGGTTGCAGCCCATCCAAGTCGCCTGGTGCGTGAGT
GGCGTGGGGGTCAGTTCCCAAAGGATGAGAAATATTTCTAAAGTATGATCATTTTCTTTT
TTTGTGAAATTTTGAAGTCACTTAGATACATGTAGTGTGTATGTATGTATATATATTGAT
AGTTAGTCAGTAGAGGCATCAACTAGCAATGGTGTAAGAACCAATATGGGCATCGAGGTC
CCGCTATTGTTTATTGACCGTAGAGGTGTCTCAGTCATGTCTACATGATTCTCGAACCCA
TAGGGTCCGCACACTTAATGTTTGATGACGATATAA
