Map Locations of contig_60721 (10895 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_60721

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71920 3 2086 bp MLOC_71920.1 Available Available LOC_Os02g54190.1, FRAME:+2, EVALUE:0.0, 13102.m06205 protein pectinesterase, putative, expressed
MLOC_71921 1 706 bp MLOC_71921.1 Available Available None
MLOC_71919 1 523 bp AK362700 Available Available None





CDS Structure of MLOC_71920






CDS Structure of MLOC_71921






CDS Structure of MLOC_71919






Contig Sequence (10895 bp)

>contig_60721 10895 assembly3_WGSMorex_rbca.fasta
ACGAAGTTATACGAATACTTTAGAGTGTAGATTCAATCATTTTGCTTTGTATGTAGTCTC
TTAGTAAAATCTCTAAAAAGACTNNNNNTTAGGAACGGAGGGAGTATAATATATTGTATG
TATTATGTAGTCTGTAGATGTAGCATTACACTTTGGTATATGCTCCTTGAGAAATTACCT
GGACGAGGCGGAGATGTCCGTGTCAACACACTTGATGCCCTTTTGAGGACATGGTAGATC
TTATAATTTTATGTTCTGCTCAGTACAAAATAGTCAAAATAGTAATAACGTTGTAACTTA
TGATTTACTTCTGGAGACTTCAATTTAATCTAGCTCTTTTATTTTGTTCATCACTCCAGG
CTTATATATTGTTGGTCGTCTTCGTTTGGAACGAAATTGGCTAACCGTCCAAGCATCCTG
GCAATGCTGGATGGAGGCCTCTCTTGCCACCAGCCTCTAGCTGAGGTGGCCGGGGTGCCT
GTCTAAGTGATGACCTTGACCGTGCCAGTGGTACTCGAGTCTCGGGTACATCCTCAGATC
CCTCTCCGTGAAGGATGAAAGCGGGACATGTGTACATAATTTTGAGCGGGTGATGGATGA
ATTCCTCTAGCGAACAGACATGATGTATCACTGATGAAAATGTTGTCCCACTGGAAAGAA
ATGCTAGTTCATTGTTGCAGTAGTTGATGTTGATTTTTGGTACTCTATCTAGGACAGGGT
GTGCTCACACAATAGGGTTCAGATTTTTGTACTAACACTTAGTATTACTATGTACTGTTA
ACTCAAATACTCAGCATAACATAGCTTTGATGGGGACTTCATGGCAAATCTTATTTGAAT
CTGAAACAAAGGCGCATGGGGAGCCAAGCTGTGATGACGGAGCAATCTGAGCGTTTCTTG
TGCAGTCTGCAACACCGGCGTGTCTCCTCAGGCATTTTCTGTCTGGGCTTGAGCGATCGA
CTTAATTCGTTGACTGGCAGCTCTGCTACTTAATCAAGTCACCATATTAGCGGCGAGATC
ACCCAACCAAAGTCATCTCATCGGATTAGAGTCGTAATCACAGCAAAATCTCGACCTCAT
TTAAGGCAGATCTCTTATCCTCTAATCCTCTTGAGTACCAACGCAACAAAAGTTTTCCCT
GCACGGAAGAATGTTGGTGAATGCCTAGAGGACACCAACATACGAACACATATTTGATCG
GACCACTCTGTGTGTGTGTGTGTGGCACATTTCCTCTATCCACTGTGGCAGTGACCAGCA
TCGTTTCTCGCTCCAGATCGATCGCCATCTGCTTGGTCCGCTACCAAAGCTGCCCACAAT
CCAACCATGCAATGTTGCATCAATTATGATGATCCTCTTAAAAAAAAAGTCTTTTGTAGC
TCGCAGAATTGCAACTTGCAACACGCAAAAGTTTCGCTATAAAACCCCTTGCACATGCAC
CTGTCAAAGCAGCGCTCTACTGCCGGGACAATGGAGATGCATGGCGGCAGGGCAAGCCGG
CGCCGACAACGGAGGCAAGAAGCCGTTGCCATGGTGCTCGCTCTAGCCACACTAACACTA
GCAGCAGCTCCTGCCGCCGGAGAGCAACAGGAGGCGTCGGGCGCGAACGTCACCGCCATC
TGCTCGTCGACGCCGTACCCGGGCGCGTGCCGCACGGCGCTGTCCTCGTCGGCGTCGCGG
GCTGCCAAGGACCCCTTCGCGGCATCCGTGCAGTTCGCCATGGCCAGGGCCGCGTCGGCC
CGCGCGCTGGCGCGCAACCTCTCGGCGTCTTCCTCCGCGCGCCGGCGCGGTGGCGTGCTG
CCGCCCTCCGGCATGGACGACTGCGCCGAGCTGCTCGACGCCAGCCACGCCCAGCTCGGC
GACGCGCTCGCCGCCGGCTCCGCGCACGACGCCGAGACGTGGCTCAGCGCCGCGCTCACG
AACCAGGACACCTGCGGCGACAGCCTCGACGCCGTGCCGGCATCCGCGGGGCGGGAGGGC
GTGCTCAGGCGGGTCGGCGCCCTCGCGGAGTTCATCGGCACCGCGCTGGCGCTGCACGCC
AAGCTCAAGGGCGGGAGCGCGTCGCCGCCACCATCCGCCGCGCCCGACCGTGCGTTCCCG
TCCTGGGTCCCCGACCACGACATGAAGCTGATCCTGGAGTCCGCCGCGGGCGGCGTGACG
CCGGACGCCGTGGTGGCGCTGGACGGCAGCGGGACGCACGGGACCATCGGCGACGCGATC
GCAGCCGTGACCGCGGCGGCAGTGCCGCCGGTAGGCTCCTCCAAGGCGGGCGTCGGAGCA
GGGAGGAAGGTGATCTACGTGAAGGCCGGGCGGTACGAGGAGAGCGTGCGGATCTCGAGC
AGGCAGAGGAACGTGATGCTGATGGGCGACGGCAAGGGGAAGACGGTCATCGTCGGCCAC
AGGAGCGCCGCCGACGGCTACACCACCTACGCCTCCGCCACCGTCGGTACGTATACCAAA
TTAAAGCCCATGCATGCACGCCGCATCGTCAACTCAAATCAAGGACAACTGCTACAAAAG
CGACATATATTACTCCATCTTTTTCCCATCTTCTTCAATTTGGTTGCAACTTTTTTCCTT
GTCCTAGCTAGGTTCTTGAAGAAGAAATTATTACCTACCCTACCATGACAGCAGCACCCC
ATGCAAAAGCTAAATCCCAAAAATGGAGCAGCTGGCCACTACAGTTGCATGTACCCCTCC
AAATGTAAAGGCTCAAGCAACCCAAAGTCCCAAATATGCCCATGCCAATACTTCGATTTG
GTCACTAGATCCATACACTTCTCACCACTTTATTTATATCATCGATCTCATCGCAATATG
TATGCTGCACCATCAGTAGAAGAGGGGATGCTTCACATGCATCTTTTCCAGTACTCGCTA
ACGCGTTCAATGTGGTCGTGTGTGCATGCATGCATGGCAGCTGCAATGGGTTCGGGCTTC
ATAGCCAAGGGCCTGACCATCATCAACGACGCCGGGCCGGGCAAGGGCCAGGCGGTGGCG
CTGAGGGTCGGCGGCGACCTCTCCGTCGTGTACCAGTGCGACATCGAGGCGTACCAGGAC
ACCCTCCACACGCACTCCAACCGCCAGTTCTACACCGAGGACGGCATCTCCGGCACGGTG
GACTTCATCTTCGGCAACTCGGCGGTGGTCATCCAGAACTGCGACATCCGGCCCAGGAAG
CGCCGGCCGTCCGGCCAGAAGGACACGATCACGGCCCAGGGCCGGACCGACCCGAACCAG
AACACCGGCATCTCCATCCACAAGTGCCGGATCGCCGCCGCGTCGGACCTAGGCGGCACC
GAGGTGTATCTTGGCCGCCCGTGGAAGGCCTACTCGCGGACCGTCGTGATGGGGAGCTCT
CTCGACCGTTGGATCGCCCCGGCCGGGTGGCTGGAGTGGTCGGGCCAGTTCGCCCTCAGC
ACGCTCTACTACGGGGAGTACGGGAACACCGGGCCTGGCGCCGGGACAGGCGGGCGGGTG
AAGTGGGCCACGTCAATGTCCACCGTGGACGCCACGCGGTTCACGGTGCGGGATTTTATC
TTGGGAGACTCATGGTTGGGTGACACCGGAGTGAGCTACACTTCGGGGCTATGACTGATT
AAGATGGTGTCATGTTGCCACTGCTCTGTTGATTGATTAACTTGAAATATGGAACCGGAT
CACATGTAAGGACTGGATTGGTAACAATAAGGTGGAAGCTGGTGAGCTGCTATGCTAGCT
AGGCTAGCTACCTGCTAATCTATGAGCTGCCAAGCTGTTGCTGTGCATGTCCCATACTTA
AATCTAAACGAGGCTTGTTATTCACAGAAAGAGCACATTTATAACCTCTTGCTACAAACA
AAAAATCAAGGTACATCTATCATAAGAAGAATCGAACAAGAACCGAGGGTACGTTCAGCT
TCATTATGCTTGTAGAATTACCCTCAGATGCCTCAACTCCTAACAAACACTTACAGGATC
GATTCATGAGTTCGTCACTTTGGAACCGACACTGCCGAGAATGATCATTCATGGGCTAGG
AAATTGCAACAAAATACACCTTCAGAGTCTGGTATAATAATAAAAAAACCATGTTTTTAG
AGGATTTTAACACATAGCCCGAACTCTAGGGCTAGTTAATGCGTAACAAAAAAACTTCAT
TTTTTCATTCTTCTAGAAATGCAATTCCAATGCCACAAATTCATTCCTTCATAGAAAACT
AAATTATTATTATTTTATTATATTTTACTTCTACTTTAGGGGTAGAACAAAAGCAAGTAA
ATTATTTTCTTCTTAGGAAATTTCATTATTACGAAATTTCACTATGTTATGCTTCTTCTT
GCATATTAAAGAAAATTATAATTCATGTGTGAATTGTGTGCAAATTTTATTACTGATTAT
TATTATTTTTCTTAAAGGATAATACCAATTCCAGTAATTCAATCTTCACTAGAAAACTCC
ATTATTATTATTTTGTTTCATTTTATTTCTTCCCTAAGGGCCACTAAATTTATTTCTTCT
TAGGCAACTTCATTTTTTCTAAGATCCGACTTTTATATGATTATTCTTTCATATTATAAA
AGTGTAATTTATGTGTAAATTGTATGCAATTTATTTCTTTAAAACAACTATTTTCTTCTT
CTTAAAGGGCAATACCAATACCACTAATTCATTCTTCCTTAGAAAACTTCATTATTTTAT
TTTATTTTAGTTTTTTTCTTTCTTTCTTTTTAAAGGTAATACACATGTCACTAATTTATT
CCTTCTTAGGAAATTCCTTTTTTCTGAAAGTCCACTATTATTTGCTCATTATAAATAACA
CAATTTATGTGTAAATTGTGTGCAATTTTCTGTTATTTCTTTTTTCGAAGAAAGTTAATT
CCATTGTCACTAATTGAGTACTTCTTAGGAAAAAAATTGGCGAAATTCCACCAGTATATG
TGGTTGTTGCATATTTTAAAATATTGATAGCAATGTACTCCCTGCAAATTTCGCAGGTAA
TTGTTTTAAATTTTAAATTTTATTTTTTAAAGTGTAATAGAAAAGCCACTAATTCATTCT
CTTTGGGAAAACCTTAATTTATTTTTATTTTTATTTTTATGATATTATTCTTTAAGGTGT
CACCAGCACACATATTTGAATGTCATGCGTGTGGCCATTTTTCTTCTTTTGGTTATTAGA
TTATCAACTCACTGTAATTTTTACCATGGTTGTTAAAAAAATTGATATTCTAACAATACT
TAGAATATCAATAATAAAATGTGAAATACCCTAATTATTTGCAACATCTAATATCTTCGT
GAGAGGGTATTTTAGTAATTTATGTTTGAAATAATATCTCGAAGACATGAAGTTAAAAGC
TCTAGTTTCCTATAGGAGACGCATGTGCAGTATAGCATACCCACATAGAGGAGAACCGGT
CGATTGTGCCTTGGCCAGCTTGTATAGCGAGCCGAGGCAAAAATTTGTGTTTTGACCCTT
TTACGGAAGTTGATCGAGATCTGACCCTGGTTTGTAAAATTTTCGGGATCTGGCCCTTTT
CCTACCGCCAAGGTCCATGACGGTAGGAAAGTTATCCATGTCTGGACGTCACCATGACGC
ATTCGATCAACTTCCGTAAAAGGGTCAAAACACGAAATTTAGCCGCCAACCGATGCTCTC
TTTAGATGGATCAACCTTAAAAAAGGGAAATTGCGAGAGACAAATTTGTGGTAGGTCAAG
TGACCTAAATTTTGTTTCCAGTCAACTAACCACTAGCCGGTCTCAATTTCTGTAATTTTA
TATAAAAAATGCAATTCGAATCTGGGAAAACATTTGGATCTTCGAAATGGCTTGGAAATT
GACGTGAATTATCCAAGAACAATTAATTTGATTTATAAGAAGTTTCCAAATTTTCCTGGC
TAGTTCAAAAATTCCACATATATGACCAAACAATATTATATATTTCATCAATTTGGAGAT
GCGTCCACCTCAACTCGAATCATCATTCTAGTTAAACCACTAATTGCGGGGTTCTCCATT
TATTATTTCTAGAGTCTGAGTTATGTGCTCAAATTCCCGAAAAGTGTGTTTTTGGTCCAA
CTTACTCTGTTTGGGTGGGAGAATATCAGCTTGCCATCCTAAAAATTGTGAAGAACCAAA
GCTGGATGAAATCGGTGACCTCGGTCCTTAGATGATTTGATTGGCAATTGACAACATAAC
ACATAACAGGAGGTCCAATCACCCTTTGCTATCTCTGAAATTTTTTGTGGGAAACAAAAT
AGAAGGTCAGGTGGGAGATTGAAAATTCTTTCTTTTGAAAAGAAAATGCCACCAGAAGTA
GCCTTCTTTCGTAGCCAAGGCGTGAACCTTGGCCCTTGTTGAAGACATGACCTTTTATTT
TTCCTCTTTTGCTCCAAAGATCACATCCACCGATGTGATAGCCTAAAAAAAATATGCACG
AGTGTGAACGATTAAGAAATAATAGTGAAAGTGTGGCCTGTCATTCTAACTTCTAAGCAG
TGTTAACATGTGACTGTCATGCAAGGACTTCAAATTTTAAATCTCACAGGCTAGCTTGAA
ACAATCAATGGAGAGATATCTGGCTCATCCCACATGCACTATTTTTTTGAAAAGGAGGTT
AAAACCCCTGGCTTGTGCATCAATTGATGCATACAACCATGTTTACTAACTATTCAACAA
AGGTATGAAAAAACATACATCAAACCAACCGAAACCACCACTAATACCTACAAACTCGAT
AATATGGAGTGCTCTCACTCCCCGTATCGAAAACCGAGGTCGTCGTTGAATCATCCGCAT
GATGTATCGAAATCTATAGCCGGTCCAGCAAATCCAAAGCATACACCACATGCACACGTT
TTAGAAGTTGCCATCATCATCGAACCGCTGACCCACCTTCAGAAAAAAGATCCACATCAT
CCAGTCCGTTTGTCATCTACACCACCTCGATGCCAAGTGACACCACCTCCCTAGCACGTC
ATGGTCGTCGTCGGTACACCGCAGCGCCATGCCGCCAAGTACCACCAGCCGACCCAACTT
GAAGTCTCTCGAAGATCTGTCGTGCGTAGCACGTGTCAAAAAGGCATGACACAGCGTAGC
ACCTATTGACCAGGCATGACTTGACATCTCCGCCAAAGCTTCGTGTAAGACGAAGCAGCT
CCACCTCCTTCCTCTGTCTTCTAGCACTGCGACACAAACGATGCTCCCAAGAGAGAAAGG
ACACCGCAGTGTCTCCATCCTTCGATCTGGAAGACCAGATCCTAAGGTTTTCCCCCGAGC
AGCATGAGTGGGTCGACGATAGTTACACGATGATGTCTTCATCAAGGTAACAGTGCAAAA
CTTTGCCATCATCCGTCATTGGCTCGGTTTTTACCGGCAACTATGTCACCATGACTCACA
ACCGGGTCTAGATGATGGATCTCGAAGGAGATAACCTTAGAACGACCACTTTGGACGAAG
GAGATAACCACCACCTTGGACGAAGGAGATAACCACTCACCATCCAACCTTAGAACGACC
ACCTTGGACGAAGGAGATAACCACCACCGACGAGCATAGGTTCGCCGCCGCCCGGGCGCT
CGTGTGATGCAGGTCAAAACCAGGAGCGCCAACGCGATCCAAAGCCAAACCGGAGGTTGA
GCAGTTGCAACATGACCGCCAACGCCACCTGTCGTTGCGGCTACAGACCCATCGCCATAC
TCCAGTCGTCGTTGTCCGCCTTTACCGTCGAGGAGATCAAGATAAAAACCAGTGTCGCGA
TCTTGAGCAGCTGACGCGCGAGAAGAAGGCTGCCGCCGCCGAGCTGCTCGATTTTGCCCT
GGCGCCGTTGGCGACGGTGCGGAGAGGAGAGTGGTGACGGGAACTCATCAATGTGAACAA
CCCGTTTGAATGTAGATATCGGACGCTGGAATTTGTAATTGGCATTGGGTTGGCCCGAAT
GCCGATGTTTGGGTGACCTAGACATGAAAAAAGTCCGAAAGAAACCTTAAACTTATAGAC
GAAAGCTAAATCAAACCCAAACTTCAAATTCTGGAAACCAGCATATCAAACTCTTTAATC
CCAATCTATTTTAAACCTTGAAAGAGTTTTCAAATAGGGATTGCTGACGTGGCATGTCAA
ATTCCGGATTGTTAGCTGTAGACTCAATTGGGCCAGCCCAACAGGTACCAAGCGAGTTTC
TTTTTTTTAGAGGCGTGACCTAAAAAGTATTCCTCTTTCTCAAAGCGCCACCTATTTTTT
TTCCTAGAGGAATGACCTAAAAACATTTCTCTTTCTCAAAGCGCCACCTAAAAATTAGAA
AACAATAATGACTCCCGCGTAGTCAAATTTGGGACCTTTCAAAATTAAACTCATCCCGAT
AGCCACTAGAACGTACCACGATGACTATCATAATCAGAGGCTCAGGCTATTTAATCAGAA
ACCGAAGCGTCGAACTTTGAAAACATTTTTTAGGGGCGAACAAATAATGAAAACATAAAC
TTTTATGGAAATGTTCGACCATTTTATAAAGTGTGAGCACATTTCGAATATTCCTAATAC
GTAACAAAAAACTATTTCAAAAAGAATTAATTGAAAAAGCTAACACTTTTTGAAACATAC
TTTTTTAGAAACCTGAATATATTTTTAAAGTGCGAACACCTTCTCAAATTTCTAAAAATA
GAAAAAAAAATTCGAAACCTGAACAAATGTGTAAAAGAATGTTTGTGACATCTAAGAACT
ATCACGAGTTTTGAAACTGTACATGGCATTTCAAAAAATTGTTTGAAATATAAAATAATA
TTCATATGATTCAGTCAAATGTTTGGTCCACTCAAAAAATGTACATTTGAAGAATGATCA
CGAGTTTCAAAAAATGTTCTTGTGACATTTTCAAAAAGAAGCGTATACAATGTAAAAAAG
ATGTTTGGGTGATCTAAAAAAATGTGCCAAACCCTTAAAAGAATATGTGTGACATGTGTT
CGAAAAAATGTATAGACAATTAAAAAAATGTGTAGCAAAGTAAAAAAAAACATGTTCGTA
TAGTTCTATAAAACGTTTTATCATCAAGAAAATGTAAAACATGTATCAAAAAATATTACC
TTTATTCAAAAAAGTTCTGGTTACATACATTTAAAAAATGTAAATAATGTATGTGAAAAA
TGTTGAAAGTGCCTAAAAAAATATTTCACGTGTATGCTAAAAATTTACATTGGATACTGA
GAACAAATGCGAAAATAGATAACATAGAGAAAATAAACAAAGAAACAAAAGAAAACCAAA
ACGAAGAAAGACAAGCCAGGTACCTGTGAAAAAACAAAGCATAACAAAGGAAAAAAACAA
AACAAAAAAAAACAATGAGAAACTAGAGAAGCGGGAGCTACTGCGCTAACAGGCCGGCCT
AATTCAGTGAATATCGGCTAAATCCTCTCGAATGCGCTAACAGGCCCCTAATTCAGCGAA
TACCGGCTAAATCCTCTCGACTGGGCTAACAGGCCTACCTAATTCAGCGAATACCGGTTA
AATTCTCTCAAGTTTCAAAATAGACTGGGATTAAAGAGTTTGCTCCCTGCCTACCCTTGG
TTCTAAACTTCTAATCCCTCCCGTATCAATTCAATTTCAAAGACACATTGGTTCTAAACT
TCTGATCCCTCCCGTATCAATTCAATTTCAAAGACACAACCGACAGATTCAACAACTGAA
GGTAGTACAAATAATTGGTTATACATGTCAAAAGGAAGGTTATATGCTTCTATAAAAAGT
TTTCAAATTGGTTATACGTGCGAGACTGGGTACGTTGCTATGTGCTCAGCATGCACGGCT
GTGTGCGTTGCTGCATACACCTGCGCTGCTCTGCGTGTGTTGTTGCCGCTCCAGGCTATC
ATCCATCCGTGTTTGGATGTGCTGATGTGTTCATATACATGTGCAATTCAATACTTGACC
ATCCAAACAAGAGTTGGCATTCTTGCTACCTATGAATGCAAAGTACGAAATACATGAACA
TCCAAATAATAAAATAAGCATCGAGGCTCAATATCACTGTCATGGATATTTGGCATTGAA
GCCAATGCAATGTCAACTACATCCAAACAGAACGCATTAGTTATTGCATGGCTAAGATAA
AGATCACAAATGCCACAAAAGGATAGATTGAAGAGTCACGACCGAAACATGTCCAAGAAC
CTCAGTACATTCCAAGCCTAGCTACACGATCTGAATATTCTGTGGGCAGGAAGGATTCCA
CTCTCAGTGCAACCTTGCCGTCTTCACCACGAGAATATGATTTAATGCCTATTGCGCCTG
ACAGGAAATCTGCACAAGACCCAAGGTTAAATAAAGTCAAACTACATGAAAAGAAAGTAT
AATTAGGATGCTTCTTTCTTTGTGTGTAAGAATTCTAATATGAGGTCCAAGCAGAACGTT
TTTCCTTTTGGCTGTGAGATCAGAGAAACTTTTATGCCTCCGGTTTTCCTTTGCTCTATT
TGTTCGAACGAAATGAACGACTCATGCTGCTAAAGAAAAAAAATTCCTATTCTTAGGTGC
TTCCACCACTTTCCTTGCGAACCAAACAACTCGAATTGCATTTTTTGTACTCTAAGAGCA
AGGACAGAGTCAATGATACCATTATTAGCCAATTAGACCTCGTTAGAAAGCACAAATTTC
TATCAACATCTCTACTCTACTCCTATACACCTTGTTAGACGTGTATATCTTCATATACAC
GTCCATATACACCTTGTTAAATTTTACACCTCTTAGTTTTTCAGTGGAACGTGTATACAG
GATGTGGAAATCAGGACGTGTATATTCCAACGGCTATATTTTCAAACGGCTATATTTCCA
AATGTCTTTGTAATGCAGTGCTATCAATAAAATAGGATAAAGCATCAAATAGTTCTTACA
ACAACTAGAATAAAGCATCAAATAGTTCTTACAAC