morexGenes - Barley RNA-seq Database

Contig contig_60632

Source Contig contig_60632

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_60632 (5639 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_60632

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71872	1	1708 bp	AK248292.1	Not available	Available	None
MLOC_71871	1	443 bp	MLOC_71871.1	Not available	Available	None

CDS Structure of MLOC_71872

CDS Structure of MLOC_71871

Contig Sequence (5639 bp)

>contig_60632 5639 assembly3_WGSMorex_rbca.fasta
TCCGTATGTAGTCCCCTAGTGAAACCTCTTAAAAGACNNNNATTTAGGAACGGAGGGAGT
ACAACTTGTTATTTTAGCTTTATTTTTATTTATTACATTTCAATTTCCCTTCTTCCTATC
CTGAGTTAGGTGTATGCACAGAACATACTGTAACAGTTGGTTTAGCTCTATTATTCTATC
CTCCAACCAAACAAAATTGCAAGATATGTTCCCATTTCTCCATAGATGAATCTCCTTCTA
CATATAGCACTGATGGTATAGATAAGAGTAGTTTCAGAAACCAATTGCCCCATATTTTGA
CTATGAAAGAAAGTAGGTCCACTTAAAAGGCCTCCATCATAGGAGAAAACTTAAAGATAC
CTCCTGGTTAAGCCTACGTCATCCCTCCACCTCTAACACAGGGGAGGGACTTGGAGCCAA
CTGGGGCTCCATGACTATGATGGGAACCAAATTTTGTATGAACGCAACTACACATAATAT
AATTAATTCAAAAAATTCAAAAAAAAAAAACATTTAACGATCCTACGAATGGAACTGTGT
GGATACAAGTACAGAAATATGACATTCAACAATCAGTTCTAAGAATGAAACTGTGAGTAC
ATAATACTGGTAGGAAAACAATGAACAAGTTGCAGGCATATTTGCCTAGTAAAATATGCT
ACCAAAGCTTACCCAGTCAATACAATTTTTTTGAGAATAATCTGGTCAGGATCCACACTT
TTCAGTGTACCTACTGCAGCAATGACAGGTTGTTGCCCATCTATGTTCTTCAAAACAATC
AGAGGAACGGGTGGAAAGGAAATTGGAGCATAGACGGAGGCAATAGAAAATCGCCCATGA
TGTAAAAATCTCTCCATCTTATGCTTATTGCAATTGATGTTGTCAGATGAAAATAGTGGC
CTAGAAAAGGGACAAAACAATCAGTAAGATACTTCTCTGGTTATACAGTGCAACGACATG
CCTATACAAAATAAGAGGAAGAAAATCTACTCCCTCCGATCCATATTAATTGTCGGAGGG
AGTATATTATTCTCAACGGTATGGCTGAACTTTCATTACCTTGCCGTAAACTGCCGGAAC
CCAACATTGAAAATAAGAGGTTCCTTACTTCTGATAGGAGCTTCATAGGAGTCATGTTTT
TTTATGCTGCAATAAATAGCAAGTGCCAATTAAAGCTCAGTGCAGGGCATTTTAGCATTA
TATATTCAGCAAACAAATATTTTGAAACCCAAGATAATGCACATAATGTGTACAATAAGA
CAACAGTCAACACAAAACTAGTGGAGGTTTACTGGCTTACTATTGTCAAGTTAGTATGAA
CATCCTACACAAGTCCACTTTAGTTGCTAAGGGAATCCTGAGGAATAACACAATTACTCC
CAAACTTACACTAACCAAACATCCGAATTTTATTGGACCGTCTATGAGTGCTTTGACTGA
AACTGTGTTATAGCCTGTTCACATGTACATCATGCCAATATTAATATAAGCACGCGCCAA
CAGGATCCAGTCAATAAAAATTAATACACAACTTAGTATGCATACTTACAGAAAACTGGA
CCACATGAGTTTGTCAAATAGATGAAAAAAATGAATACCTGAAATGAAGAACTGAAATTT
TCGACTCATGTTGAAGAAGACCAGAAACAACCACAGGTAATTTTCTTGATGGATGACAAA
GTTTGGAGGCAACATCTGTAGGAACATTTTTCACGTGAAGCATTACGTATGATCCTATTC
GAGCACAATCCTTTGAGCTTTCTTCATCTAGCTCGGCCCTTTTAGCAAGCACATGCTTTT
GTGTTCGTGTAAACTTATCGAATGCAAATATTCTTGCATATTCAGGTGGCAAAGATTCCT
GAGGTCAACAAAATGAGGAGAAACAACCACGTCACATGACATACATAAAGTTCATATTAA
ATTTGCACTAGCCAGTAATAGCAAAATCATACGCACCTTAGGATCCCAGGATGATGTCCT
AAATGATTTTAGTCCTCTGTATTTTGCAAAACGTTTTCTTGCCGGGACATCTAAGGGTGT
CTCCACCTCATCAGGAAATTCTGAAACATTATATAAGATATGCATGTCATTTTTCGGAAT
TACAATAGTGTATAGGGTTAGTAACAACCCTGGAGCTAGAAGTCAACCAAACAGGCATCA
ACTGGAACAATTAATAAGACTAGAGACTTAGGTTGATTCCTGGGCAACCCCTCCAAGGAG
TAATTACAATGACACAATGATTCTAACAAGAATCTTGGTCTTGGCAGTTCCAAGCCCAGG
TTCTTTATCCACAATATTTTTTAATGGCCCATTTTTATCTTCAAGTAATTTTCGTATACA
CAACTTTTGGGCCAATGGACACGCAAAACCATTTAACTTAGCTTGATATAATGATAACTT
TTGGGGCAATGGGTCAAGAAACTCAGTTCTGTCACCTCAAATTAAATACAATGGGATATG
ACAGATAGAACCCTCTTCCATCCCACATGTCAGCACACTAGCAAGTGTCGTGTACAATAG
TTGTGGCAGTTGGCACAGCTATCATCGTCGCGGTTTGTGAGCCATGAGTAAGCGGTGTAG
GCCCATGAACAGGGTGGCACAAGGGTTCATTGGTGGTAGTAGCTTAAGGGATCACGGCAA
TGAAATTTAAAGTGGCTGTGTGTGTTAACATTGCCCGAAAAGTTATGGTCACGGGGAATT
TACTCTTATGTTCCTTCCTTCACATAAGAAAACCAAAGCAACCATAACTCTTCAAAATTA
ATTAATGACACGCCAATAATAGGGTGATAAAAGGAAATAAAATTAGCTTCCTAATTCATG
CTGTCATCTGTCATACCAAAGATTAATTTCTGACAACCTCAACTCTCCATATGGCAAATT
AGCATCGAATATGCTTTTGAAACATGTAGTGTCCTCAAAAAGATCTCAAGAATAAAGACT
ATTACGATCTGGGTTCTCCAAAACCGAGTTTTGTGGAGGCTTCCTCGGCGTGCCGGCATC
ACGGCAGCTCGACGGGCCGGCTGGGGCGGCGGCTGGCTTTCCGTTGTCGGCTCATCTGTA
GGCGGCCCGTTTCGACCTTCGGTCCCTCTCCTCGTCGTCTGGTTGCTACCTTCGTCGTAG
GTTCGGCCCTCCCCCGACTACGGTCCATCGCTTGTCTCGCACCCGGCAGTAGGACCGACC
TCGTCTCACGCCGGTAGCAGGACCGACCTCGTCTCGCGCCCGACAGCAGGACCGTGCTCG
TCTCGCACCCGACAGCAGGACCGTGCTCGTCTCGCGCCCGATGCCGCAGGACGGGTCGAT
GGAGGCCAGTTTTGGCCGGTCTATGGGGTTTCGGCGTTGGGGACAGCCCAGGGGTGCAAA
AGGCGGGTCCTTTCCGCTCGTATCTTTGGTTGGGGGTAGCAGTGGGTCTTAAGTGGGTGG
TGTCCAGGTCTAGGATGCCGGGGCGGCGGCCCTGGTGGTGGTGCCACGGTGCTCATGGGC
AAAGCCCGTGGCTAGGTGCTGCCTGGTGCCCATGGCCGTGTGGGCGGCGTGGTCACCGGG
GTGTGGCGTCAGGTGGTAGTGAATATTGGCCGAGGTGAAAACCTGATCTATCTTCGGACA
GACCGGCGACGGCATAGCTCGTTCCCTTCTTGAAGGCGTCGTCGCGGTGATCCTCGGGTC
GGGCAGTGGCGGCATTCTGGTGTCGTAACCTTCCTGAAGGCGCCACCTTGAAGCACACGG
TTCATCGTATGCAGCTTCATCTCTTCGCGGTGGCATGTTCACGGTTGAGAACTCCGGTTG
CTCTTGTAGTACTAGGTAGTGTTGCTGCGCTCGGCGCCTATGTTTTCAGCCTTGGGTGTG
TGCGTGTGTTGTGGTGGCGTGCGTTTGTATCTGAGATGTGATGGGTCGTTGCTTTATATA
TAAAGCGGGGCGAAAGCCTTTTTCGGTAAACCGAGTTTTGGCACTGGGAATTAGCTGGAA
ACGTGTACCAGCAAACCAATAAATAAAAAACAGGAACCAGGTTTTAGACCCTCCATGTGG
TGTGCTTACCAATGTTCAGGATATCGTTAACTGGTACCATATCGGTCGGGTGCTGGGTAG
GGATAAATAGGCGAATCGGCCGATAAATCAGTTAATCAGCTATTTTCGGTGACCCACTGA
GTAGCGATTAACTTAACGAGATGCCGATTAACTGGCCAATATTTGGAACATTGATGCTTA
CTAAAAGGGATTTTAAACACTTGAAGGCAATTGAAAACCCATACCTTCATCATCAGCATT
AGATTCTTTGATTCTCTTAATGTCTTCCTCTATCTGCTCTTTGGTAAGATTTTCATCATC
CTGCAAATGCATAAAGGATACATTTAGTTTGAGGCGTGTAGCTAAAAACTGATGAAGGAA
TCCAAAGAGTAAAATAAGAAAGAACAGTAATTTCAAAAGGCCAACAAGCCACACCTCGGA
ATTTACAGAACAGCAGAGAAGAGCAAAACAGTACCCCAGGAAGATAATGTTCCCTCCATA
CAAACAGTTCATGTAAGGTTGCAAAAGGAGGACCAGAAAACTTCTGTGAATTATTTAAAT
TTTACTAATTAATTTAAGTAACTTAAGTTGATTTAAGTTGAGCAAATATATAGTATAAAA
ATATCAAGTTGAGTAAGTGTACGTTTGAATCCCTCATTTTAAAGGTAATTTGGTACAATG
AATCATGTCATGAAAGTTTTACACCTTTAACAACCTATCTGCATCCAGACATAATATTAA
AATGTTGCCCATATCTAGTCCCAACCGGATCCAGATAGCGTGGGCAATATCGGTCCAGTC
CAGCGCCACTAGGAACTATAGTTCTCTAGGTAGGAGCATTGGAGTTTCTTCGCTAAATCC
TTCTTACATAATCCCTCTCACCCTCCCTGCCCACATTACATTTTTTTCTATCATGCAAAA
CCAGACACAAACAAAAAAACATGGCAAACAAAATGTGGAGGGAGGAAAATAAAAACATAA
GCATTCCAAAGGCAAGAGTTGTATGGGTATGTACCAGCTAAATCAGTAAAAGGCTGGTGA
ATGGAGCAGGTGCATTAAATAGTATAACATCGTTAGATCAACAGCAAGAAATAAGATAAC
TTACTCCCATCTCGGTACCCCCAATAGTTTCTTGATCAAATTTCTCTGTGAAGTGAGACA
CTGCATCTATATCTGAACTATCACTGTCGTGCTCTGAGTGATCTTTCTCATCAATTACCA
TTCCAGCACCATCTGGATTGTCATTCTCAGAATCATCACCTTCACCATCTGTATCATCAA
CAATCCAAGCAGCCTGCCAATAGCACCAATATTATTTTTAAATAAAAAATATCATGGGCT
ATACTAAGAGTAAATATTCAATATTGAATAGCCTTGTGAACCTGGTATTCTGATGTGCCG
CGAGGAAGTTTCCTCTTTACAACCCTTCTTTGTTTATTGCTTTCATAGGCTTCCTCCATC
TCAGCTTCTGTTGGCCAAGTCTAATCAAATACAAATAATACTGCACATTAGTACTTAAAA
TTGATTTGCCTAGTTTGACTTGTACTCCCTCCGTACCTAAATATNNNNNNNNNNNNNNNT
TTCACTAGGTGTCTACATACGGAGAAAAATGAGTGAATCTATAATCTAAAGTATGTCTA