Map Locations of contig_60210 (8451 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_60210

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_71631 6 2867 bp AK357735 Available Available None





CDS Structure of MLOC_71631






Contig Sequence (8451 bp)

>contig_60210 8451 assembly3_WGSMorex_rbca.fasta
TTTTACGGATCCGTTATGCGGGATCTGCATCCGCGGTCGTGCGCGCCGGCCCGCAAAGGC
GTTTTTCCGCGAACTGCAAACACNNTTTGCGGACCGGACGGATGCGGGGTCCGCTAGAGT
TGCTCTTAACGAGCTGCTCGGCTTGTTAAGACTCGGATCGTTAAGCTTGTGCTCGTTAAG
GCTTGGCTCGCTATGCTCGTTAATCTTAACGGCAAAAAATTATGTTGAGCAAAAATCCAT
GCTCGACTTTGTTCGTTAAAAGCTCGTTAAGCTCGTGAGCATTTTTTTAACAGACTACAA
TGTGTTATGGCCTATGGGACGAGAGTGTGTGTGTAATTTTTATGAAGGAATATTATGAGT
GCAAGCAGGGGCAGAACCAGGATTTGAATATGAGGGGAGCGAAACCTATTGTTAACGTAA
AAGATGAAAATCATGGTATATTAAGTCCCATGATAGCGTGGACCATAAGGCAAAAGTTAT
GATTTGAAACTAAAAAATGATAATTGTCAGCAAAATGTTGGACCTTCAAGTTAAAGCAAA
TAGTTTGAATAAATATTTACCCCATGAGTTGTTTCCTGTCGTAATTTATAAGAAAATCTA
CTGCCATTGTTTCAAAGTAATTCCAGATTTAGGTTTATCCTAAGTCAAACTTCTTCAAGT
TTGTAGAAAAATATACCAAGATCTGATACATTGAATTGGGTTTTTTTTAGAATCTTTAGA
AAACATTCATGCTATGCATATTCAATTTTGGTAGATCTTAGCACGTACAGTAGCAATTTT
TGTAAATATGATTGAAATTAACTTACGACAAAGGTAGAACTATAATTATTTTAGAACGAT
GGGAATAATAATAAAAGTAAGTAATAGCTATAAACTAGTAGTGTGTATTGTATCTGAATA
TGTGCATCTGCCCTACTCACGCGTCATCTATCCATATCTGATTCGCTTGCGTCTAGCCGT
CCCATGCGTCGACCGGCAGACTGTAAATAGATGAACGGTGTTGTTGTCATGGCGAGTAGC
GGCCAACGGCAATGACAAAGTCCCTAGCCCCTCGCAAGACACTCTTGATGGCAAAGCAAC
GGCGGTGGCAGCGTTCGCCCTAGCAGGAGTCAGCACAAACATATGTTGGTTTATATATCA
GTCGAGGAATTTGATGAATTAGACACTAGCCTGTGACAAAATACTAATACTCGACCACAA
CCGTACGTGGGTTATTGGGTTATGGGCTTCTCTACTTGAATAATAGTTCAGTTAATTCTT
AACATAAGGGTTAATTATGCAATTAGTTGTGACCATTAGGCATATACAATTCACACTACA
CACTACCTGCTATGGATCGTTGAGGAGGCGGGAGATTGGGAGGGGTCTGACCCCCGCTCG
CCCTCCCTGTTTTCGTCCCTGGCTGCGAGAGGAAGTGTGGTAGTTTGTTGACATACGATC
AATATAATGTTACGACAAATAGAAATATGCGTTATGTTGCGGTAATGAGCTTAATAAGGT
ATTTATCGAACTTGTTAGTTCGTTCGTTAAGTTTGTTATAAACTTAATAAGCTAAAATCA
ATGATTGAGCTCCGACCTTAACAAGTCAAGCTATCGAATGCTCGTTAAGCTCGCGAGCTT
GGAGCTTTTGGTCAGACGGGATAAGATAAACGATATGGATATATGATGAATCATCTTGTA
CGCGCGGACAAGCTGCGGGGGCCACGAAACGAACTAGCGTGACGAAACGGGAGATATACA
CCACGGCAGGACAGGACGAACGCAAAAGGAAGGTGGATGCGTGGATAACCGCTCCGACGC
ATAGCAGCAGCGTCTTGGATAAGCAGCACAACTTTTCGTTTTTCTGTTGGATTGATTGAC
GGGGCTTGGATTTGCTTCCGACGGCAGCACAACCGTCTCCCGTTGGCCACGGCAGCCGGG
CCAGCCGTTCATGTCGAAAGCATTCCAAGACGAGCCAACACTTTATCCCATCTTTTCTAA
AAAAAAAAGGAAAGAGTTTTTGAGCTCGAGCTCGAACGGTAAATTCCAAAAAAATGAAAA
ACAATTCAAAAAAAATCTGAAATTTTTCTGGGGCAAACATTGACAAAAGTTTGCCATGCT
TACAAAAACTCATCAAAGAATCACATTCATGGAAGTCATGGCAAAAGAAATGATGCTTCA
AAAGGGTTATTTTCAAAAGCATTTTGAAGTGCTGATTTTTTTTATATATTTTTATTTTGC
CAAAACTTCCACGAATGTGATTTCATGCTGAAACTTTGAAAGCACTTAAAACATTTGTCA
AAGTTCATCATACAAAAAAATCAGAACTTTTTTAGTTTGTTTTCATTTTTTACGATTTTA
CTGTTAATCACAAGCTCAAATGAGCTTACGGAAAAACACTTATTCCCATCTCTAGTTTGT
TTGTAGCCATTGCTGTGAAGCGCCTCTAGCTTGTGCATCTCACAGCTTTGTTCAATGAAT
CCAACACTTAACGCTAGAGCCCCAATGCTTGAAACTACATACAGAATTCCATGGGAAACA
TACAGTACACATCATCAGGCAGCCCACGAGGACCAGACGATCAGTCCGGTGTTCAGCTAG
AGAGAAGCTCGAGAGAGGAGCTTCCTGATCTACAGCACTTGCTTGGTTTACAGATACAGA
GTACCGAGTGAAGTAATCCATATCATATCATCAGCTACAAGAGTGGGCTTTGCTCCCAAA
TTTCGATCCCCGTTCATCAGATTGCGCAAGGCTCTCTTCTTCTAACTATTCCTGCTATCT
CCAGCTGCAACGGCGGGCATTTGCAGTCGAACTTCGGTTTGTCTGTCGGCTGACTTCAAG
CTCCAAAGGTTCTGCAGACGCATGAGTAATATCAGTACAAATTCTATTATATCTCTATAA
GGCTGTTTGTTTATCCTATTATATTTTGCAAGCATCAAACCATAGGCATGAACAGTTTAA
TTAATTATATGCAACAGAGCATTGGCACTCAAACTATAATATGGAATTAAGCGTTGGAAG
GGGAAAAACATGAACGGTTTAAGAGTTATAGGACCAAATCTACACTCAGCCAATAGTCAA
GGGTCTGTCAGATATGCAATTCTAGTTCAAAATGCAAAGCGCCATGTTGCTTCAAAAAGG
GAGATCAAGCTTTATAAAGATTCATTGCTATCAAAATAGGGCTAGCCATGTCTTTAGCAA
ATTTTGCTCCGACGTACTGCATGCTGATAAGCTGTAGTCCAATTCAAAAACCCAGTTTGG
ACCATCCTTCTGGAAACCCTATTTGATGAAATGAATCTCTCTTTCCAGCAAAAAAAAATG
GGGGGCTAATATTAATTTTTCCAAATATGTATGTGTTGAACAGAAATCCAGATAGCTATG
ACAAGCAAAGTAACTCACCAAAAGGTTTCTACAATCATTGTAGATACCAACAATACTACA
ATTAGCAAGCATGATAGGTGAAACAGCAGCTGAAAGGCTTGCCACTTCTTCTCAAGGATG
CCTTCTTGGTTGCCCTCACAGCACATTGATCTTCACTGACAGCACACTGATCCTCGCTGA
CAGTACTACGCATGCCTTGTGCCTTCTTTTGAGCAGAACGTAGTTTGCCCAAAATTCTAT
CCATCGATGATGACCTCTTCTTTTCAAGCTTCATCTGTAATACAAAGGGCAGAACATGTA
AGTGTGTAGCCAAAGCATAGAAACATTAGAAATAGTGCAAACATGGCTGATTGTGCACAA
CCAGAAACAATACCTCCAACTTCCGAATTGCTGCCTCTGCTTTTGCTTTCTGCAGATTTT
CCCAAGCAGTGATCTTTGCTTCCTCTCTCTTGCACCTTGACAACATAATTACTTGGTTTC
AGCAACAGGATATATGTCAATAATATATAAGTAATATCCAATAGTTATTGAGGACGACAA
ACATTATTATCTTGTGTACAATAGGAAAAACAGGACCATCACTTAGCATAGCAAACAACT
AAAAGTATGATTTCTACGAATTTATACATAGAAATCCAAGATTCACTCACTGTAAGTGCA
TATCTAGTCCATAAAACATTTGGACCCATTGGTGCCGATTTTTCCTTTTTCATTATTTGC
CAGTTGCTGCCTTGATAATTAGAAAAAGTTAGACTTTCACAATCTATGTCCTCCTATTCT
AAAGATAGGAAACCCTCTGGAATTCACTACCAGAAGGGAACCTATAATAAGTGATCTTAT
GACATCATAAAACACCATCATGCACTGAATTAAATTTGTAACATGATACTCCCTCCGTCC
CAAAATNNNNNNCTCAACTTTGTACTAACTCTAGTATAAAGTTGTACTAAGCTNNAGACA
GTTATTTTGGGACGGAGGAAATATGTGCCAGTTTGCTGAAGAAAGAAACTAGTTAAGTTG
GAATAAGGTCCAGAACTTTTGGAGTGTGTCATTTCAGTCACAGTATTTGCATGTAACTCC
AGCTATTCTTGCAACCTCAAATTGTGGAAGTTTGTCCAACCCACAGTTAACTGTCCAATC
CACAGTAGGCTGCATCATAGCGAGATCTATACTCGGTTTGCAACAGCCAACATACATAGC
TCATTAACCTTTCTACCCATATACAATATGTACACTGTCAGGCATACAGCCAAATTAGCT
TGGGACTGTAGGATGACCTTTTTATTAAACACAACAAACATTTCCAGAAATGCGAGTCAT
CTGTGGACCTCTTGCTGGGAACTCTGACAGCAGGATGGGCCATATATGATTTCAGTTATA
ATACCACAATGAAAGGACTGTGCATGCCTTCGTGCTAATCTGGCAGTAGTGCGAAATCAA
TTTACTCGTAGACAAAATGGCAAACATGAAATAAGAACTTACTTTGATATGCATCTTTCT
CTTTCTAATTATAGAACATGTGACAAGTAGCATATCAGCAGGCTCCATTGTAGCCAGATC
TATACTCGGTTTGCAACAGCTACCATACATAGCTCACTACCCTCCCTATGCATATGCATT
CTGTACACTGTCTGGCATACAACCAAATTGGCTTGGGATGTAGGACGACCTTTTATTAAA
CACAACAAACATTTCCAGAAATACAAGTCATCTGTGGAACTCTTGCTGGGAACTGACAGA
CGGATGGGCCATATAAAATTTCAATTATAATACCACAATGAAAGCACTGTATGTGCCTTC
GTGCTTATCCGACAGTAGTGCAAAATAGTTTACCCGTAGACAAGTAGCAAACATCAAATA
AGAACTTACTTTGATATGCATCTTTCTCTTTCTTTTTCATCAAAAGATGGAGCTCGGGCC
TCTGTAGTCTTCTTCCTCCATTCCACAATATTTGTTGATCGCTTATCAGAGCCTCGTGTT
ACATGTCGCTTGGACCACCGGGTAACAGTTACTTGATCATCTACCTGCACATCCCTAACT
TCAACCTTAGGTGTATGACTATTGGATTCTCTAATAGCATGTCCTGACGGCAAACTGGAG
CAGGAATGCCTCGCTTTTGGGGAGGATGATATTATACTGTCATCAGGACTCATTTGTGTG
GCAACATCTTTCTTTATAATTGGACTGGAAATCGCAGGAGTCGCTCCTTGTTGGCCTTGT
AAGACATCATCTGTGTACAGGGTATAAAGATAGTAAGGTTGATTTCTCTCACCGTTGAAG
ATATGGCACACGATAGAGTTGTTTTAGGTTTCTAAACTACTTCTGCTATTTGTCTGATCT
TTGTAAGGGGCAAATAACAGACTTGTTAAACCCTACCATTCGTATATATGATTACGGGAA
AGCCTTTTTTTAACGTCCAAACTAATGTAAACCAAAAGTGATGTATGATTTGAGATACAC
AACGATTGTGGGGTTGAAATGTAGAATCTCCTAATTGTTCAACTTCAATGTATTGGCGTG
TATAAGAGTTCCATCTTATGATCGAATCCATACAATATATGAATATATTTTCTTGTTGCA
GCTAATCAGACAGATTAAATGCGAAGTAGCAAAAATGTGCTTGATACTGATGAGAGGAAA
CTAGCTCAAACCTTGTGCAGCTTCCTCTGAGATATGAGCAAAGGCAGATGCCTCCATAAG
TGTTTCTGTCCACGCATGCGTACTTGATGATCTCCAAATATACGGCTCCTTCTCAGCCGA
ATAGGACCTACTGCTTCCATCATCCCCACTTCTGGCTCTTCCACTGCTGAAGTCACCATT
GCGCGCATGCCCTGGCATGAGAACCCCAGCAGAGAAAGGCGAATGAGCCGCAAAATTAGC
GGCCGCCAGAACACCATCGAAGCAGGGAATCATCGGCGAAACAGATGCATAAGCTCCTGG
AACACCAGCAGGATGACCAAGCGGCCCACTCTTCGACTTTGGCCGTCTATGATGCGGCGC
CGGTGCAGACATCCTCCCCATCCCATCACAAGAAACCGGGCTCAAGATCCACTTCTCGGC
GTCCTCCCATTTGGACGGCAGCTTCCTCCCATTGTTGAAAGGAAGCACAACCCCGCTGCC
CCCATACCTCCTGTTGGCGCCTGCCCCCAGCGGCACCCGCTCCGAGCTCCAGCCCTTGGG
GTACTGCATGTTGCCGGCGCAATGCCGGTGGTAGTTGGGCGTCCCGGGGCTCGGAAACGT
GCCTGATCTGCTTCGCGACGACGCCGTGGAGCTCTTGCTCATCCCTCCCACGGCAGCCCC
GAGCAGGCACCTCGGCGAGAGCACGAGCAGCTCGATCCCCCCGAACGCGTCGCCGTTGCC
GAGCTCATGCGAGGCCGCCGGCGGCCGCGCCTCCGCCCTGAGCTGCAGCTGCTTCTGGCA
CTCTGCTAAGCAGACAAGCAAAAACAAACAGTGAGCGATCACTTCGCTTCACTCGACGGT
AAAGGCATATCATGTAGTAGCTGTGACGCCGGAGGGGGATGAATGGATTACCTTTCAGCG
AGTGTGAGAAGGAGTCGCCGGCGGCCGCCTCCTCCAAGCCGGCCGCGTCGTAGCCCGCCT
CCGCCTCGTCGTCGTCTGCGTAGGTGTGAAAGGGGTTAGCTGCCGAGGCGGCGGCGCAGC
GAGGAGACAGAATGCGGGGCACTGGGATCGCTTGACCCACCTCTGGGAGCTGTGGCACGC
GAGGCGTGGCTGCTGCCGCGCAGGTGGAGGTGGTGGAGGAGGCCCGGATCTGGATCGGGC
GCGCCGCGTGGCCCCACCGGCGGCTGCGAAAAGAGCCAAACAAAGGGAGCGTCTCTCAGT
CTCAGCAAACCGGAATCCGGGACGGAGCACCGACCGAGCAAGCTCGGGCACAGTCACCGC
CAAACAGCGAACGGGAAAAAAGGCGACGCAACGGGACGAACGAGCCAGGCAATGATAGAA
AAGCGACGCAGCTCCGTTCGAATTCCTTTTGGCTTTATCCCTTGCTCAGGCGGAGGGTTT
CGAGGTTGAACTGGCCCCGGCGGCGCGCATGTGCGGCGACGTGCGCGCGCGCGTGCTCTG
GATTGGATTGGATCTATTGACTCTCGCAGCAGTAAAATAATCCGGCGAGTGAAGCGGTAA
TGTGGACGCAATGCGGAAGAGGGGTAGATAGGGAGGAGAGGTTTTTACAGCGGGTGGCGG
CGCGGGGCGCCTTCGGCGCGGCGGCGGCTTCTTCCGGCGGGAGGACGGAGGGTGATGGCG
GCGCTCGGTCGCTGGGCCGGCGGGGAACCCTAGCCCGGGCGCGGCGCGAGGCATGGCCGG
CCGCGCGGTCGCATTCCCCGATGACGGCGCCACGGCGGGGCAGTCGATGAGCGGGGCGAG
GCGGGGCTTCCCTCCTCTCCGCGGATTAAAAATGGCGCGTGGATGGGAGGCAAGGCAAAT
AAAGGCTCAGGAAGATGATGCTACTACCACCTCCACTTCCACATTCCTTCCTCGGTGGGT
TTTGTACGTTTGTTCGCGGGCCGGGCCCGGGCCGGCCGTGCTCCTGCGCCGACGGGGGTA
CGGCGAAAACTTCCCGCCGTCACGTTTCGCATTCGAGCGAGGCAGCACGGCGCCTCAGCG
CGTGCACTGCTGCCACGCACACCTGGGACCCGCCTCTGCTACGCTTGGGGCCCGCCTGCC
TGTGTCTGTCAGCGTTGGCCCTGCCGTCGCGGGGCCCGCGGCGTCGGAGCAGCTTTGACT
TGGCGCGAATCTTTCCCGAGCGGGCGCTGGACCGTTCGTTCATGCTGGTACCGCGTTTTA
CGCCCGGCCTCCTCGCGCACGTGGTGGGCGGGCCCGCGCGTCAGCGGGACGTGTCGTGGG
GTGGTGGCGGTCCGGGCCGGGCGCACAGTGCAGGGCGTGGCCCGGCCAGGGGAGTAGGGA
TAAAACTACCTCCTCCGTACCTAAATATAAGTCTTTTAAGATATTTTATTACTATGTGTC
TACATACGAAGCAAAAAAATGAATTTATACTCTAAAATATGTNNNNNNNNNNNNNNNNNT
AGTCCATTAGTTGAACCTCTAGAAAGACTTATATTTAGGCACGGAGGGAGT