morexGenes - Barley RNA-seq Database

Contig contig_6018

Source Contig contig_6018

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_6018 (3843 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_6018

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_71613	1	912 bp	AK356805	Available	Available	None
MLOC_71612	1	895 bp	MLOC_71612.1	Available	Available	None

CDS Structure of MLOC_71613

CDS Structure of MLOC_71612

Contig Sequence (3843 bp)

>contig_6018 3843 assembly3_WGSMorex_rbca.fasta
TGTCTTTCTCGTTTTGTCTCTTGTGTTGCCGGCATTGTGGGGGGTGAGGCTTGGATCTGT
GTCTGTGTGCGGCGTTGGTTTCGAGGGGGCGCTGGCCCCTTGCGGCGGCGGCAGCTTCCC
GCCGTTCCTGTGCATCGGCGTCGCCAACTCGAGCTCCACCCTGTGCGAGGACCGCTCCAA
GTACGTGTTCTGGGACGCCTTCCACCCGACCGAGGCCGTCAACTTCATCGTCGCCGGCAG
GGTCGTCGACGGCGGCGCCGCCGATGCGTCGCCCGTCAACGTCCGCGCCTTGTTCCAGCG
TCGATACGGATGAACAAGGAGGTCGATCGCCTTGCGTTGCGTGCGTGCGTGCGTGCGTGC
ACCGCATCGCGGAATATCTCCTCCCCTCGCGCAGCGCTTCCTGCACGTCTTCTTTAAACA
AACGTGTAGAACGTGACGGACGACGGTGACTTTGACGTACGGGCGATGTTTTCTCGTTTC
TTTTTCTGCCGCTGCCTTTGGCTTCCTTTGTGATGGCCGGAAAGAAGATCGCTGTTGTCG
AAAGGAACAATGCGCAACGACCGACGGACGGTGATATATATATGCTGGTGTACGTGCGGT
CTACAGAGGTGCACGAGTAGTAGAAACTAGCAAGTGCGAAGCAGTAGAGAGTATATATGC
GCGCGTGTTTGACGGGACTATTCTGCACACCGCCGCCGGTGCAGTTTCCAGCCACGGCCA
CGCCACGCGGGTATACATGCGCCGCGCAACACTTGGACTCGGTCTGTTGACGACGGCCGG
GCGGTGCCGGTGCAAGGCGCGCACGTAGCTAGCCTTCCATGGAGGCGGCTGCGGCGGGGC
CTCCGAAGCCCGCAGCCATCGCCACGGCGAAGGTGGCGTCGTCGTCGTCGTTCTCGTCCG
TGGGCGCGAGCCTGGTGGCGGTGGGGCTGGGCGGCGCGGCGCTGCTGGTGTGGTGGGCGC
TGGCGTTCCACCCGGCGCACGCGCGGCTGTGGATGGTGCCCGCGGGGCTGGTCCTCCTCG
GCACGCCCGTCCTCGCCTGGCTCTCCCTCCTCGCCTCCGGCCCGTGCCGCTGCGGCCGCC
GCCCGGTCGACGCGCCGGAGCCTGTTCCGGCGCCGGGCGCACACGCGGCCGCTTAGCCAC
CCGCCTCCACGTAGAGCTTGCGTCCAGATCCAGACACGCGCTGCGCCATTCTTCCCTGCC
CGTGCACTGTATAGCGCTTCTCTTTCTCTCGGCACGTACGTACGTACGTTCCTGTTAGCT
TGCTCTGCTGCTTCTTGCTCGCTCCGGGATCACGGATCAGCCCAGATCAGACCAGATATG
TACACAGCCATACATACATACATACATACATACATACATATGTGCAGCTTTTGTTTCCAT
GTCCAGGGCTACTAGCTATTACTGCTGCTGCTTCGGTTTCTTCGTTGCCTACTTTGCAGT
GTTCTTGCTCTTGCTCGCGCCGCGGACGTTTTTCCGACGTTCTTCCCGATGCCAACTTTC
TGATCCGTTCACGCGCAAACGATTTTGTTGGTTCACGCGGCGGCGCCGAAAGTCTAAAGC
GGGCGAGCGAGAGAGAGTGTGCGTGTGCCGAATCGTACGCCGCCACACTCCACTCCGGCG
GATCGGCCTCGATCGTCGTCGTCGGTCGGATCGGGAGGTCGGAGGTGGACGTGCACTAGG
CGCGCGCGGGACCCAGGGAATGCCCCCGCCCCCCTCTTGCCGGATTCCACTTGGGCAGAG
ACATCTTTTCGGTGTTTACAACGGGGTGTTATCTTAGGTGGGTAAGGTGGTGTGGTTTAT
TTAGCGATAAGGATTTAGGTATTGGAACTGGAACTGACGAGCCTACTAGCTAGGCCCTAT
CGTAAGAGGATCCAAGTAAACTGTTGTTATCTTGTCATCCTAGTTTAAGCAGATGGAGCG
CTCGGTTCGAATCCAGTCACCGCGCACAATGCTTTGATAGGTGATAGTACGTGTGATCAG
AGATTCCCAAGTTACTTGACAGGGCAAGCGGATGCGATAGCTTCTGGAACGCTCCGAGCA
AGCAGTCCAAATCCACACCCAAAATACTAAGAGCAAGTGCCATAGAGCCGAGTCAGCTGG
TTATAAGGAATAAATTAATATATTTTTGTTTAGTTAGAGGAAGAGAAGAAGAGAGAGAAG
GTAAGCAGGCTCTTAGCTAAAAGCCAGCTCTAGCACGTGCTCCTAGGCATATTATGAGTA
TGAAAGGTGGACCATATAATAAAAAAGTAGTACACTTTTGCAATGAACTATTGTACATGT
TAGCTATAAGGTGAGCTATAGATGACATGGCAATGGCTTATAGTCAGCAGCTGGCTATAC
TATTGTACTTGCTCTAATCCATACTCACTTTCTACTCCCCATTTCCTAAATATATAAGTC
TTTTTTTGAGATTTCACTACGAACTATATATAGACATATTTTAGAGTGTAGATTCATCCA
TTTTGCTTCACATGTAGTCTACAGTGGAATCTCTACAAAGTCTTGTATTCCCTCCGTATC
ATAATATCTGAGCTGCTAAAACGTTGTATATTATATGGTACAGAGGTAGTATTTAGGAAC
GGAGTGAGTAGTACATGGTACATACTGATACTGCAACGTACGTAGAAACTAGAGTAATAA
TTTGGCAACATAGCAGCTATGAGCCGCTTTCTCATTTCTTTTTGACTGCTACCTACCTTG
TCTTAGACCGATTATACAACTACAATAACATACATACAGTATACAGACAACATCAGGCAG
AACGCACCAGGATTTCGATGAGCATGGTTCATGTTCGACGGCCACCCGCCCCACCCCAAA
TCACCCAGCTTCAGCTTCGTGGTGAACCTTGGATCCAGGGTAGGAGAACAGTTTGGTGGC
GTTCCTGTAGCTCGTCTCGGCGAGTTCTGCTTCTGGCATTTCAAGCAGCGATGCCACATA
CTTCAAAACCTGAAAAGAACATGGAAGGGAGCCACGGTTTATACTAGAATGATACTTTCC
TTACCATCATCGGTTGGTGCGAGTACGACAACTTATCAAGTAAACAAGCCAATGTTGGAC
AGATGCAGTAGTGACACCGTGCCAGTGAGATGGGAGTGGTATAATTCAACAATAGAAAAA
CAGCGGCACACAGAGTTTTAAAACTCTATAAGCAACAGGGTACAGTAATGTTGAGATAGT
GGAGTATTCGGAGAAAATATTGCGTGTATCCATAGAAAGGTTTAGTTCTTCATAGACATC
CTCGTGTGCTAGTCAGGACAATTATATTTTCATTATTAGGAAACTGTTTAAAAATAGAGA
AGTAGCAACATGTACCATGAAGATTTGCTGACAAAACTATCAGCCAAACACATCAGGGCA
CAAATCTTACAATGTGGATGTTAGCTGGATGATTCAAGGATTCGTTTGAAGAGGCAGCCG
CCTGAGAGGTCGAATCGCTGTGAGACTTTTCAGTATCCGCATCTGAAGTGTCCAGAGGGA
CTGTGACTGGAGAAACATTGTCCAACTTTGGTACTGCATCTGGTGCATCTGTCTCTAACA
GAATTCTGTCCAAGGGTATCTAGAACAAATACAAATGCATTTCACTGGTGGTGCAGAATA
GATTTATGGTAACCATGGCAAAGCGAACGTTTTTTATGGCAATTTATGTTGGCGCAAGGA
TGGCAAATTTAGTTTGCAAGCACGGCAATTTCCTGGGAAGGAAATAAACTGAAGCGGATT
TGCCATACTTACCAACTAAACTTGCCATCATAGGAAAACATAAATTGCCATTCAAAAATT
CGATTTGCCATGGTCAAAAATCTGACGTCATATTTGTAGTTGAATCCATAACTACTCCCG
CGG